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Aliases for ZSCAN9 Gene

Aliases for ZSCAN9 Gene

  • Zinc Finger And SCAN Domain Containing 9 2 3
  • Zinc Finger Protein 193 2 3 4
  • ZNF193 3 4 6
  • Cell Proliferation-Inducing Gene 12 Protein 3 4
  • PRD51 3 4
  • Zinc Finger And SCAN Domain-Containing Protein 9 3
  • Cell Proliferation-Inducing Protein 12 3

External Ids for ZSCAN9 Gene

Previous HGNC Symbols for ZSCAN9 Gene

  • ZNF193

Previous GeneCards Identifiers for ZSCAN9 Gene

  • GC06P028192

Summaries for ZSCAN9 Gene

GeneCards Summary for ZSCAN9 Gene

ZSCAN9 (Zinc Finger And SCAN Domain Containing 9) is a Protein Coding gene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZNF396.

UniProtKB/Swiss-Prot for ZSCAN9 Gene

  • May be involved in transcriptional regulation

Gene Wiki entry for ZSCAN9 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN9 Gene

Genomics for ZSCAN9 Gene

Genomic Location for ZSCAN9 Gene

Start:
28,224,886 bp from pter
End:
28,233,487 bp from pter
Size:
8,602 bases
Orientation:
Plus strand

Genomic View for ZSCAN9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZSCAN9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN9 Gene

No data available for Regulatory Elements for ZSCAN9 Gene

Proteins for ZSCAN9 Gene

  • Protein details for ZSCAN9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O15535-ZSC9_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 9
    Protein Accession:
    O15535
    Secondary Accessions:
    • B4E1W6
    • E7EVQ2
    • Q2TTR1

    Protein attributes for ZSCAN9 Gene

    Size:
    394 amino acids
    Molecular mass:
    45954 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZSCAN9 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZSCAN9 Gene

Proteomics data for ZSCAN9 Gene at MOPED

Post-translational modifications for ZSCAN9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

No data available for DME Specific Peptides for ZSCAN9 Gene

Domains for ZSCAN9 Gene

Gene Families for ZSCAN9 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Graphical View of Domain Structure for InterPro Entry

O15535

UniProtKB/Swiss-Prot:

ZSC9_HUMAN :
  • O15535
Domain:
  • Contains 1 SCAN box domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 5 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZSCAN9: view

No data available for Suggested Antigen Peptide Sequences for ZSCAN9 Gene

Function for ZSCAN9 Gene

Molecular function for ZSCAN9 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZSCAN9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity IEA --
GO:0005515 protein binding IPI 16189514
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN9: view

Phenotypes for ZSCAN9 Gene

genes like me logo Genes that share phenotypes with ZSCAN9: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZSCAN9 Gene

Localization for ZSCAN9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN9 Gene

Gene Ontology (GO) - Cellular Components for ZSCAN9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZSCAN9: view

No data available for Subcellular locations from COMPARTMENTS for ZSCAN9 Gene

Pathways for ZSCAN9 Gene

SuperPathways for ZSCAN9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZSCAN9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZSCAN9: view

No data available for Pathways by source for ZSCAN9 Gene

Transcripts for ZSCAN9 Gene

Unigene Clusters for ZSCAN9 Gene

Zinc finger and SCAN domain containing 9:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZSCAN9

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN9 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c · 3d · 3e ^ 4 ^ 5a · 5b · 5c
SP1: - - - - -
SP2: - - - -
SP3: -
SP4: -
SP5: - - -
SP6: - -

Relevant External Links for ZSCAN9 Gene

GeneLoc Exon Structure for
ZSCAN9
ECgene alternative splicing isoforms for
ZSCAN9

Expression for ZSCAN9 Gene

mRNA expression in normal human tissues for ZSCAN9 Gene

SOURCE GeneReport for Unigene cluster for ZSCAN9 Gene Hs.100921

genes like me logo Genes that share expressions with ZSCAN9: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for ZSCAN9 Gene

Orthologs for ZSCAN9 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF193 35
  • 99.48 (n)
  • 98.65 (a)
ZNF193 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZSCAN9 36
  • 78 (a)
OneToOne
Species with no ortholog for ZSCAN9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN9 Gene

ENSEMBL:
Gene Tree for ZSCAN9 (if available)
TreeFam:
Gene Tree for ZSCAN9 (if available)

Paralogs for ZSCAN9 Gene

Selected SIMAP similar genes for ZSCAN9 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with ZSCAN9: view

Variants for ZSCAN9 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN9 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs7206 -- 28,233,360(-) TAAAA(C/T)GAACA utr-variant-3-prime
rs1132343 -- 28,226,627(+) ATTAG(G/T)ATCAG intron-variant, utr-variant-5-prime
rs1150705 -- 28,226,008(+) TCAGG(G/T)GCTTC intron-variant, utr-variant-5-prime
rs1150706 -- 28,228,836(-) ACAGA(G/T)AAGGA intron-variant
rs1150707 -- 28,229,827(+) GTCTG(C/T)CTACC intron-variant

Relevant External Links for ZSCAN9 Gene

HapMap Linkage Disequilibrium report
ZSCAN9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZSCAN9 Gene

Disorders for ZSCAN9 Gene

No disorders were found for ZSCAN9 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for ZSCAN9 Gene

Publications for ZSCAN9 Gene

  1. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Three genes encoding zinc finger proteins on human chromosome 6p21.3: members of a new subclass of the Kruppel gene family containing the conserved SCAN box domain. (PMID: 9244436) Lee P.L. … Beutler E. (Genomics 1997) 3 4
  4. The zinc finger-associated SCAN box is a conserved oligomerization domain. (PMID: 10567577) Williams A.J. … Collins T. (Mol. Cell. Biol. 1999) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ZSCAN9 Gene

Sources for ZSCAN9 Gene

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