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Aliases for ZSCAN9 Gene

Aliases for ZSCAN9 Gene

  • Zinc Finger And SCAN Domain Containing 9 2 3 5
  • Zinc Finger Protein 193 2 3 4
  • Cell Proliferation-Inducing Gene 12 Protein 3 4
  • ZNF193 3 4
  • PRD51 3 4
  • Cell Proliferation-Inducing Protein 12 3

External Ids for ZSCAN9 Gene

Previous HGNC Symbols for ZSCAN9 Gene

  • ZNF193

Previous GeneCards Identifiers for ZSCAN9 Gene

  • GC06P028192
  • GC06P028224

Summaries for ZSCAN9 Gene

GeneCards Summary for ZSCAN9 Gene

ZSCAN9 (Zinc Finger And SCAN Domain Containing 9) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZSCAN16.

UniProtKB/Swiss-Prot for ZSCAN9 Gene

  • May be involved in transcriptional regulation.

Gene Wiki entry for ZSCAN9 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN9 Gene

Genomics for ZSCAN9 Gene

Genomic Location for ZSCAN9 Gene

Chromosome:
6
Start:
28,212,665 bp from pter
End:
28,233,487 bp from pter
Size:
20,823 bases
Orientation:
Plus strand

Genomic View for ZSCAN9 Gene

Genes around ZSCAN9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN9 Gene

No data available for Regulatory Elements for ZSCAN9 Gene

Proteins for ZSCAN9 Gene

  • Protein details for ZSCAN9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O15535-ZSC9_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 9
    Protein Accession:
    O15535
    Secondary Accessions:
    • B4E1W6
    • E7EVQ2
    • Q2TTR1

    Protein attributes for ZSCAN9 Gene

    Size:
    394 amino acids
    Molecular mass:
    45954 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZSCAN9 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZSCAN9 Gene

Proteomics data for ZSCAN9 Gene at MOPED

Post-translational modifications for ZSCAN9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

No data available for DME Specific Peptides for ZSCAN9 Gene

Domains & Families for ZSCAN9 Gene

Gene Families for ZSCAN9 Gene

Suggested Antigen Peptide Sequences for ZSCAN9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O15535

UniProtKB/Swiss-Prot:

ZSC9_HUMAN :
  • Contains 1 SCAN box domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 5 C2H2-type zinc fingers.
Domain:
  • Contains 1 SCAN box domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 5 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZSCAN9: view

Function for ZSCAN9 Gene

Molecular function for ZSCAN9 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZSCAN9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with ZSCAN9: view
genes like me logo Genes that share phenotypes with ZSCAN9: view

Animal Model Products

CRISPR Products

miRNA for ZSCAN9 Gene

miRTarBase miRNAs that target ZSCAN9

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZSCAN9 Gene

Localization for ZSCAN9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN9 Gene

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZSCAN9 Gene

Pathways & Interactions for ZSCAN9 Gene

SuperPathways for ZSCAN9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZSCAN9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZSCAN9 Gene

Drugs & Compounds for ZSCAN9 Gene

No Compound Related Data Available

Transcripts for ZSCAN9 Gene

Unigene Clusters for ZSCAN9 Gene

Zinc finger and SCAN domain containing 9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN9 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c · 3d · 3e ^ 4 ^ 5a · 5b · 5c
SP1: - - - - -
SP2: - - - -
SP3: -
SP4: -
SP5: - - -
SP6: - -

Relevant External Links for ZSCAN9 Gene

GeneLoc Exon Structure for
ZSCAN9
ECgene alternative splicing isoforms for
ZSCAN9

Expression for ZSCAN9 Gene

mRNA expression in normal human tissues for ZSCAN9 Gene

SOURCE GeneReport for Unigene cluster for ZSCAN9 Gene Hs.100921

genes like me logo Genes that share expression patterns with ZSCAN9: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for ZSCAN9 Gene

Orthologs for ZSCAN9 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF193 35
  • 99.48 (n)
  • 98.65 (a)
ZNF193 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZSCAN9 36
  • 78 (a)
OneToOne
Species with no ortholog for ZSCAN9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN9 Gene

ENSEMBL:
Gene Tree for ZSCAN9 (if available)
TreeFam:
Gene Tree for ZSCAN9 (if available)

Paralogs for ZSCAN9 Gene

(429) SIMAP similar genes for ZSCAN9 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with ZSCAN9: view

Variants for ZSCAN9 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN9 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs7206 -- 28,233,360(-) TAAAA(C/T)GAACA utr-variant-3-prime
rs1132343 -- 28,226,627(+) ATTAG(G/T)ATCAG intron-variant
rs993619 -- 28,221,885(-) ATAGG(C/G)TCAGA intron-variant
rs1150698 -- 28,213,126(-) CTTGC(C/T)ATGCA reference, missense
rs1150699 -- 28,213,897(-) TCCTA(C/T)TGATG intron-variant

Variation tolerance for ZSCAN9 Gene

Residual Variation Intolerance Score: 68.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.34; 53.63% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZSCAN9 Gene

HapMap Linkage Disequilibrium report
ZSCAN9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZSCAN9 Gene

Disorders for ZSCAN9 Gene

Relevant External Links for ZSCAN9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZSCAN9

No disorders were found for ZSCAN9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZSCAN9 Gene

Publications for ZSCAN9 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. The palmitoyl acyltransferase HIP14 shares a high proportion of interactors with huntingtin: implications for a role in the pathogenesis of Huntington's disease. (PMID: 24705354) Butland S.L. … Hayden M.R. (Hum. Mol. Genet. 2014) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. A Y2H-seq approach defines the human protein methyltransferase interactome. (PMID: 23455924) Weimann M. … Stelzl U. (Nat. Methods 2013) 3

Products for ZSCAN9 Gene

Sources for ZSCAN9 Gene

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