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Aliases for ZSCAN5DP Gene

Aliases for ZSCAN5DP Gene

  • Zinc Finger And SCAN Domain Containing 5D Pseudogene 2 3 5
  • Putative Zinc Finger And SCAN Domain-Containing Protein 5D 3
  • Zinc Finger And SCAN Domain Containing 5D, Pseudogene 2
  • Zinc Finger And SCAN Domain Containing 5D 2
  • ZNF495D 3
  • ZSCAN5D 3

External Ids for ZSCAN5DP Gene

Previous HGNC Symbols for ZSCAN5DP Gene

  • ZSCAN5DP
  • ZSCAN5D

Previous GeneCards Identifiers for ZSCAN5DP Gene

  • GC19P056753

Summaries for ZSCAN5DP Gene

GeneCards Summary for ZSCAN5DP Gene

ZSCAN5DP (Zinc Finger And SCAN Domain Containing 5D Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN5DP Gene

Genomics for ZSCAN5DP Gene

Regulatory Elements for ZSCAN5DP Gene

Enhancers for ZSCAN5DP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F056252 1.2 Ensembl ENCODE 0.4 +9.0 9006 0.3 ATF1 CBX3 NFRKB RAD21 CHAMP1 YY1 CBX5 ZNF143 KLF13 ZHX1 U2AF2 ZNF580 NAT14 ENSG00000269696 ZNF582-AS1 FIZ1 ZNF667 MIMT1 KMT5C ZNF470
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZSCAN5DP on UCSC Golden Path with GeneCards custom track

Genomic Location for ZSCAN5DP Gene

Chromosome:
19
Start:
56,243,925 bp from pter
End:
56,247,482 bp from pter
Size:
3,558 bases
Orientation:
Plus strand

Genomic View for ZSCAN5DP Gene

Genes around ZSCAN5DP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN5DP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN5DP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN5DP Gene

Proteins for ZSCAN5DP Gene

Post-translational modifications for ZSCAN5DP Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZSCAN5DP Gene

Domains & Families for ZSCAN5DP Gene

Gene Families for ZSCAN5DP Gene

Suggested Antigen Peptide Sequences for ZSCAN5DP Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZSCAN5DP: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for ZSCAN5DP Gene

Function for ZSCAN5DP Gene

Gene Ontology (GO) - Molecular Function for ZSCAN5DP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA --
GO:0003676 nucleic acid binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN5DP: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZSCAN5DP Gene

Localization for ZSCAN5DP Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZSCAN5DP gene
Compartment Confidence
nucleus 3

Gene Ontology (GO) - Cellular Components for ZSCAN5DP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
genes like me logo Genes that share ontologies with ZSCAN5DP: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN5DP Gene

Pathways & Interactions for ZSCAN5DP Gene

SuperPathways for ZSCAN5DP Gene

No Data Available

Interacting Proteins for ZSCAN5DP Gene

Gene Ontology (GO) - Biological Process for ZSCAN5DP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006357 regulation of transcription from RNA polymerase II promoter IEA --
genes like me logo Genes that share ontologies with ZSCAN5DP: view

No data available for Pathways by source and SIGNOR curated interactions for ZSCAN5DP Gene

Transcripts for ZSCAN5DP Gene

mRNA/cDNA for ZSCAN5DP Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN5DP Gene

No ASD Table

Relevant External Links for ZSCAN5DP Gene

GeneLoc Exon Structure for
ZSCAN5DP
ECgene alternative splicing isoforms for
ZSCAN5DP

Expression for ZSCAN5DP Gene

NURSA nuclear receptor signaling pathways regulating expression of ZSCAN5DP Gene:

ZSCAN5DP
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZSCAN5DP Gene

Orthologs for ZSCAN5DP Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN5DP Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN5D 35
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 35
  • 46 (a)
ManyToMany
-- 35
  • 43 (a)
ManyToMany
-- 35
  • 43 (a)
ManyToMany
-- 35
  • 42 (a)
ManyToMany
-- 35
  • 41 (a)
ManyToMany
-- 35
  • 41 (a)
ManyToMany
-- 35
  • 41 (a)
ManyToMany
-- 35
  • 41 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Zscan5b 35
  • 38 (a)
OneToMany
Species where no ortholog for ZSCAN5DP was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN5DP Gene

ENSEMBL:
Gene Tree for ZSCAN5DP (if available)
TreeFam:
Gene Tree for ZSCAN5DP (if available)

Paralogs for ZSCAN5DP Gene

No data available for Paralogs for ZSCAN5DP Gene

Variants for ZSCAN5DP Gene

Variation tolerance for ZSCAN5DP Gene

Gene Damage Index Score: 22.50; 99.44% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZSCAN5DP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZSCAN5DP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for ZSCAN5DP Gene

Disorders for ZSCAN5DP Gene

No disorders were found for ZSCAN5DP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ZSCAN5DP Gene

Publications for ZSCAN5DP Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 64

Products for ZSCAN5DP Gene

Sources for ZSCAN5DP Gene

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