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Aliases for ZSCAN5D Gene

Aliases for ZSCAN5D Gene

  • Zinc Finger And SCAN Domain Containing 5D 2 3
  • Zinc Finger And SCAN Domain Containing 5D, Pseudogene 2 3
  • ZSCAN5DP 3 4
  • Zinc Finger And SCAN Domain-Containing Protein 5D Pseudogene 4
  • Putative Zinc Finger And SCAN Domain-Containing Protein 5D 3
  • ZNF495D 3

External Ids for ZSCAN5D Gene

Previous HGNC Symbols for ZSCAN5D Gene

  • ZSCAN5DP

Previous GeneCards Identifiers for ZSCAN5D Gene

  • GC19P056751

Summaries for ZSCAN5D Gene

GeneCards Summary for ZSCAN5D Gene

ZSCAN5D (Zinc Finger And SCAN Domain Containing 5D) is a Pseudogene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and nucleic acid binding. An important paralog of this gene is ZSCAN5C.

UniProtKB/Swiss-Prot for ZSCAN5D Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN5D Gene

Genomics for ZSCAN5D Gene

Genomic Location for ZSCAN5D Gene

Start:
56,240,404 bp from pter
End:
56,247,494 bp from pter
Size:
7,091 bases
Orientation:
Plus strand

Genomic View for ZSCAN5D Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZSCAN5D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN5D Gene

No data available for Regulatory Elements for ZSCAN5D Gene

Proteins for ZSCAN5D Gene

  • Protein details for ZSCAN5D Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CG00-ZSA5D_HUMAN
    Recommended name:
    Putative zinc finger and SCAN domain-containing protein 5D
    Protein Accession:
    P0CG00
    Secondary Accessions:

    Protein attributes for ZSCAN5D Gene

    Size:
    497 amino acids
    Molecular mass:
    56244 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZSCAN5D Gene

Proteomics data for ZSCAN5D Gene at MOPED

Post-translational modifications for ZSCAN5D Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZSCAN5D Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ZSCAN5D Gene

Domains for ZSCAN5D Gene

Gene Families for ZSCAN5D Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Suggested Antigen Peptide Sequences for ZSCAN5D Gene

Graphical View of Domain Structure for InterPro Entry

P0CG00

UniProtKB/Swiss-Prot:

ZSA5D_HUMAN :
  • P0CG00
Domain:
  • Contains 1 SCAN box domain.
Similarity:
  • Contains 5 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZSCAN5D: view

Function for ZSCAN5D Gene

Molecular function for ZSCAN5D Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZSCAN5D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN5D: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZSCAN5D Gene

Localization for ZSCAN5D Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN5D Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZSCAN5D Gene COMPARTMENTS Subcellular localization image for ZSCAN5D gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ZSCAN5D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZSCAN5D: view

Pathways for ZSCAN5D Gene

SuperPathways for ZSCAN5D Gene

No Data Available

Interacting Proteins for ZSCAN5D Gene

Gene Ontology (GO) - Biological Process for ZSCAN5D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZSCAN5D: view

No data available for Pathways by source for ZSCAN5D Gene

Transcripts for ZSCAN5D Gene

mRNA/cDNA for ZSCAN5D Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZSCAN5D

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN5D Gene

No ASD Table

Relevant External Links for ZSCAN5D Gene

GeneLoc Exon Structure for
ZSCAN5D
ECgene alternative splicing isoforms for
ZSCAN5D

Expression for ZSCAN5D Gene

mRNA expression in normal human tissues for ZSCAN5D Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZSCAN5D Gene

genes like me logo Genes that share expressions with ZSCAN5D: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZSCAN5D Gene

Orthologs for ZSCAN5D Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN5D Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN5D 36
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 41 (a)
ManyToMany
-- 36
  • 46 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
-- 36
  • 43 (a)
ManyToMany
-- 36
  • 43 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
-- 36
  • 42 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Zscan5b 36
  • 38 (a)
OneToMany
Species with no ortholog for ZSCAN5D:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN5D Gene

ENSEMBL:
Gene Tree for ZSCAN5D (if available)
TreeFam:
Gene Tree for ZSCAN5D (if available)

Paralogs for ZSCAN5D Gene

Paralogs for ZSCAN5D Gene

genes like me logo Genes that share paralogs with ZSCAN5D: view

Variants for ZSCAN5D Gene

Relevant External Links for ZSCAN5D Gene

HapMap Linkage Disequilibrium report
ZSCAN5D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for ZSCAN5D Gene

Disorders for ZSCAN5D Gene

No disorders were found for ZSCAN5D Gene.

No data available for UniProtKB/Swiss-Prot for ZSCAN5D Gene

Publications for ZSCAN5D Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4

Products for ZSCAN5D Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZSCAN5D
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ZSCAN5D
    • Block miRNA regulation of ZSCAN5D using miScript Target Protectors

    Sources for ZSCAN5D Gene

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