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Aliases for ZSCAN5CP Gene

Aliases for ZSCAN5CP Gene

  • Zinc Finger And SCAN Domain Containing 5C, Pseudogene 2 3 5
  • ZSCAN5C 3 4
  • Zinc Finger And SCAN Domain-Containing Protein 5-Like Protein 2 3
  • Zinc Finger And SCAN Domain-Containing Protein 5C Pseudogene 4
  • Zinc Finger And SCAN Domain Containing 5C 2
  • ZNF495C 3

External Ids for ZSCAN5CP Gene

Previous HGNC Symbols for ZSCAN5CP Gene

  • ZSCAN5C

Summaries for ZSCAN5CP Gene

GeneCards Summary for ZSCAN5CP Gene

ZSCAN5CP (Zinc Finger And SCAN Domain Containing 5C, Pseudogene) is a Pseudogene. An important paralog of this gene is ZSCAN5B.

UniProtKB/Swiss-Prot for ZSCAN5CP Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN5CP Gene

Genomics for ZSCAN5CP Gene

Genomic Location for ZSCAN5CP Gene

Chromosome:
19
Start:
56,202,301 bp from pter
End:
56,209,454 bp from pter
Size:
7,154 bases
Orientation:
Plus strand

Genomic View for ZSCAN5CP Gene

Genes around ZSCAN5CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN5CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN5CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN5CP Gene

No data available for Regulatory Elements for ZSCAN5CP Gene

Proteins for ZSCAN5CP Gene

  • Protein details for ZSCAN5CP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NGD5-ZSA5C_HUMAN
    Recommended name:
    Putative zinc finger and SCAN domain-containing protein 5C
    Protein Accession:
    A6NGD5

    Protein attributes for ZSCAN5CP Gene

    Size:
    496 amino acids
    Molecular mass:
    55729 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZSCAN5CP Gene

Proteomics data for ZSCAN5CP Gene at MOPED

Post-translational modifications for ZSCAN5CP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZSCAN5CP Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ZSCAN5CP Gene

Domains & Families for ZSCAN5CP Gene

Gene Families for ZSCAN5CP Gene

Protein Domains for ZSCAN5CP Gene

Suggested Antigen Peptide Sequences for ZSCAN5CP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NGD5

UniProtKB/Swiss-Prot:

ZSA5C_HUMAN :
  • Contains 1 SCAN box domain.
  • Contains 5 C2H2-type zinc fingers.
Domain:
  • Contains 1 SCAN box domain.
Similarity:
  • Contains 5 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZSCAN5CP: view

Function for ZSCAN5CP Gene

Molecular function for ZSCAN5CP Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZSCAN5CP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA --
GO:0003676 nucleic acid binding IEA --
genes like me logo Genes that share ontologies with ZSCAN5CP: view

Phenotypes for ZSCAN5CP Gene

GenomeRNAi human phenotypes for ZSCAN5CP:
genes like me logo Genes that share phenotypes with ZSCAN5CP: view

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZSCAN5CP Gene

Localization for ZSCAN5CP Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN5CP Gene

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZSCAN5CP Gene

Pathways & Interactions for ZSCAN5CP Gene

SuperPathways for ZSCAN5CP Gene

No Data Available

Interacting Proteins for ZSCAN5CP Gene

Gene Ontology (GO) - Biological Process for ZSCAN5CP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZSCAN5CP: view

No data available for Pathways by source and SIGNOR curated interactions for ZSCAN5CP Gene

Drugs & Compounds for ZSCAN5CP Gene

No Compound Related Data Available

Transcripts for ZSCAN5CP Gene

mRNA/cDNA for ZSCAN5CP Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN5CP Gene

No ASD Table

Relevant External Links for ZSCAN5CP Gene

GeneLoc Exon Structure for
ZSCAN5CP
ECgene alternative splicing isoforms for
ZSCAN5CP

Expression for ZSCAN5CP Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for ZSCAN5CP Gene

Orthologs for ZSCAN5CP Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN5CP Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 36
  • 45 (a)
ManyToMany
-- 36
  • 47 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
-- 36
  • 40 (a)
ManyToMany
-- 36
  • 40 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Zscan5b 36
  • 39 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN5C 36
  • 98 (a)
OneToOne
Species with no ortholog for ZSCAN5CP:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN5CP Gene

ENSEMBL:
Gene Tree for ZSCAN5CP (if available)
TreeFam:
Gene Tree for ZSCAN5CP (if available)

Paralogs for ZSCAN5CP Gene

Paralogs for ZSCAN5CP Gene

Pseudogenes.org Pseudogenes for ZSCAN5CP Gene

genes like me logo Genes that share paralogs with ZSCAN5CP: view

Variants for ZSCAN5CP Gene

Sequence variations from dbSNP and Humsavar for ZSCAN5CP Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
VAR_042970 -
VAR_042971 -
VAR_052927 -
VAR_052928 -

Variation tolerance for ZSCAN5CP Gene

Gene Damage Index Score: 6.16; 75.78% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for ZSCAN5CP Gene

Disorders for ZSCAN5CP Gene

No disorders were found for ZSCAN5CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ZSCAN5CP Gene

Publications for ZSCAN5CP Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4 67

Products for ZSCAN5CP Gene

Sources for ZSCAN5CP Gene

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