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Aliases for ZSCAN5C Gene

Aliases for ZSCAN5C Gene

  • Zinc Finger And SCAN Domain Containing 5C 2 3 5
  • Zinc Finger And SCAN Domain Containing 5C, Pseudogene 2 3
  • ZSCAN5CP 3 4
  • Zinc Finger And SCAN Domain-Containing Protein 5-Like Protein 2 3
  • Zinc Finger And SCAN Domain-Containing Protein 5C Pseudogene 4
  • ZNF495C 3

External Ids for ZSCAN5C Gene

Previous HGNC Symbols for ZSCAN5C Gene

  • ZSCAN5CP

Previous GeneCards Identifiers for ZSCAN5C Gene

  • GC19P061411
  • GC19P056717
  • GC19P053026

Summaries for ZSCAN5C Gene

GeneCards Summary for ZSCAN5C Gene

ZSCAN5C (Zinc Finger And SCAN Domain Containing 5C) is a Pseudogene. GO annotations related to this gene include nucleic acid binding and RNA polymerase II transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZSCAN5A.

UniProtKB/Swiss-Prot for ZSCAN5C Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN5C Gene

Genomics for ZSCAN5C Gene

Regulatory Elements for ZSCAN5C Gene


Genomic Location for ZSCAN5C Gene

Chromosome:
19
Start:
56,202,301 bp from pter
End:
56,209,454 bp from pter
Size:
7,154 bases
Orientation:
Plus strand

Genomic View for ZSCAN5C Gene

Genes around ZSCAN5C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN5C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN5C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN5C Gene

Proteins for ZSCAN5C Gene

  • Protein details for ZSCAN5C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NGD5-ZSA5C_HUMAN
    Recommended name:
    Putative zinc finger and SCAN domain-containing protein 5C
    Protein Accession:
    A6NGD5

    Protein attributes for ZSCAN5C Gene

    Size:
    496 amino acids
    Molecular mass:
    55729 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZSCAN5C Gene

Post-translational modifications for ZSCAN5C Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZSCAN5C Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ZSCAN5C Gene

Domains & Families for ZSCAN5C Gene

Gene Families for ZSCAN5C Gene

Suggested Antigen Peptide Sequences for ZSCAN5C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZSCAN5C: view

No data available for UniProtKB/Swiss-Prot for ZSCAN5C Gene

Function for ZSCAN5C Gene

Molecular function for ZSCAN5C Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZSCAN5C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA --
GO:0003676 nucleic acid binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN5C: view

Phenotypes for ZSCAN5C Gene

GenomeRNAi human phenotypes for ZSCAN5C:
genes like me logo Genes that share phenotypes with ZSCAN5C: view

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZSCAN5C Gene

Localization for ZSCAN5C Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN5C Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZSCAN5C gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZSCAN5C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
genes like me logo Genes that share ontologies with ZSCAN5C: view

Pathways & Interactions for ZSCAN5C Gene

SuperPathways for ZSCAN5C Gene

No Data Available

Interacting Proteins for ZSCAN5C Gene

Gene Ontology (GO) - Biological Process for ZSCAN5C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006357 regulation of transcription from RNA polymerase II promoter IEA --
genes like me logo Genes that share ontologies with ZSCAN5C: view

No data available for Pathways by source and SIGNOR curated interactions for ZSCAN5C Gene

Drugs & Compounds for ZSCAN5C Gene

No Compound Related Data Available

Transcripts for ZSCAN5C Gene

mRNA/cDNA for ZSCAN5C Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN5C Gene

No ASD Table

Relevant External Links for ZSCAN5C Gene

GeneLoc Exon Structure for
ZSCAN5C
ECgene alternative splicing isoforms for
ZSCAN5C

Expression for ZSCAN5C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZSCAN5C Gene

mRNA differential expression in normal tissues according to GTEx for ZSCAN5C Gene

This gene is overexpressed in Testis (x5.9).

NURSA nuclear receptor signaling pathways regulating expression of ZSCAN5C Gene:

ZSCAN5C
genes like me logo Genes that share expression patterns with ZSCAN5C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZSCAN5C Gene

Orthologs for ZSCAN5C Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN5C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN5C 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 35
  • 47 (a)
ManyToMany
-- 35
  • 45 (a)
ManyToMany
-- 35
  • 41 (a)
ManyToMany
-- 35
  • 41 (a)
ManyToMany
-- 35
  • 41 (a)
ManyToMany
-- 35
  • 41 (a)
ManyToMany
-- 35
  • 40 (a)
ManyToMany
-- 35
  • 40 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Zscan5b 35
  • 39 (a)
OneToMany
Species where no ortholog for ZSCAN5C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN5C Gene

ENSEMBL:
Gene Tree for ZSCAN5C (if available)
TreeFam:
Gene Tree for ZSCAN5C (if available)

Paralogs for ZSCAN5C Gene

Paralogs for ZSCAN5C Gene

(22) SIMAP similar genes for ZSCAN5C Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for ZSCAN5C Gene

genes like me logo Genes that share paralogs with ZSCAN5C: view

Variants for ZSCAN5C Gene

Sequence variations from dbSNP and Humsavar for ZSCAN5C Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10419548 --
rs12979551 --
rs1865102 --
rs4801690 --

Variation tolerance for ZSCAN5C Gene

Gene Damage Index Score: 6.16; 75.78% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZSCAN5C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZSCAN5C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZSCAN5C Gene

Disorders for ZSCAN5C Gene

No disorders were found for ZSCAN5C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ZSCAN5C Gene

Publications for ZSCAN5C Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4 64

Products for ZSCAN5C Gene

Sources for ZSCAN5C Gene

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