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Aliases for ZSCAN5C Gene

Aliases for ZSCAN5C Gene

  • Zinc Finger And SCAN Domain Containing 5C 2 3
  • Zinc Finger And SCAN Domain-Containing Protein 5-Like Protein 2 3
  • ZNF495C 3

External Ids for ZSCAN5C Gene

Previous GeneCards Identifiers for ZSCAN5C Gene

  • GC19P061411
  • GC19P056717
  • GC19P053026

Summaries for ZSCAN5C Gene

GeneCards Summary for ZSCAN5C Gene

ZSCAN5C (Zinc Finger And SCAN Domain Containing 5C) is a Pseudogene. GO annotations related to this gene include nucleic acid binding and sequence-specific DNA binding RNA polymerase II transcription factor activity. An important paralog of this gene is ZSCAN5D.

UniProtKB/Swiss-Prot for ZSCAN5C Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN5C Gene

Genomics for ZSCAN5C Gene

Regulatory Elements for ZSCAN5C Gene

Genomic Location for ZSCAN5C Gene

Start:
56,202,301 bp from pter
End:
56,209,454 bp from pter
Size:
7,154 bases
Orientation:
Plus strand

Genomic View for ZSCAN5C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZSCAN5C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN5C Gene

Proteins for ZSCAN5C Gene

  • Protein details for ZSCAN5C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NGD5-ZSA5C_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 5C
    Protein Accession:
    A6NGD5
    Secondary Accessions:

    Protein attributes for ZSCAN5C Gene

    Size:
    496 amino acids
    Molecular mass:
    55729 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZSCAN5C Gene

Proteomics data for ZSCAN5C Gene at MOPED

Post-translational modifications for ZSCAN5C Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZSCAN5C Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ZSCAN5C Gene

Domains for ZSCAN5C Gene

Gene Families for ZSCAN5C Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Suggested Antigen Peptide Sequences for ZSCAN5C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NGD5

UniProtKB/Swiss-Prot:

ZSA5C_HUMAN :
  • A6NGD5
Domain:
  • Contains 1 SCAN box domain.
Similarity:
  • Contains 5 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZSCAN5C: view

Function for ZSCAN5C Gene

Molecular function for ZSCAN5C Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZSCAN5C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000981 sequence-specific DNA binding RNA polymerase II transcription factor activity IBA --
GO:0003676 nucleic acid binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN5C: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZSCAN5C Gene

Localization for ZSCAN5C Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN5C Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZSCAN5C Gene COMPARTMENTS Subcellular localization image for ZSCAN5C gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ZSCAN5C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
genes like me logo Genes that share ontologies with ZSCAN5C: view

Pathways for ZSCAN5C Gene

SuperPathways for ZSCAN5C Gene

No Data Available

Interacting Proteins for ZSCAN5C Gene

Gene Ontology (GO) - Biological Process for ZSCAN5C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated --
GO:0006357 regulation of transcription from RNA polymerase II promoter IBA --
GO:0006366 transcription from RNA polymerase II promoter IBA --
genes like me logo Genes that share ontologies with ZSCAN5C: view

No data available for Pathways by source for ZSCAN5C Gene

Transcripts for ZSCAN5C Gene

mRNA/cDNA for ZSCAN5C Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN5C Gene

No ASD Table

Relevant External Links for ZSCAN5C Gene

GeneLoc Exon Structure for
ZSCAN5C
ECgene alternative splicing isoforms for
ZSCAN5C

Expression for ZSCAN5C Gene

mRNA expression in normal human tissues for ZSCAN5C Gene

mRNA differential expression in normal tissues according to GTEx for ZSCAN5C Gene

This gene is overexpressed in Testis (5.9).
genes like me logo Genes that share expressions with ZSCAN5C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for ZSCAN5C Gene

Orthologs for ZSCAN5C Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN5C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN5C 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 45 (a)
ManyToMany
-- 36
  • 47 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
-- 36
  • 40 (a)
ManyToMany
-- 36
  • 40 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Zscan5b 36
  • 39 (a)
OneToMany
Species with no ortholog for ZSCAN5C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN5C Gene

ENSEMBL:
Gene Tree for ZSCAN5C (if available)
TreeFam:
Gene Tree for ZSCAN5C (if available)

Paralogs for ZSCAN5C Gene

Paralogs for ZSCAN5C Gene

Selected SIMAP similar genes for ZSCAN5C Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for ZSCAN5C Gene

genes like me logo Genes that share paralogs with ZSCAN5C: view

Variants for ZSCAN5C Gene

Sequence variations from dbSNP and Humsavar for ZSCAN5C Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
VAR_042970 -
VAR_042971 -
VAR_052927 -
VAR_052928 -

Relevant External Links for ZSCAN5C Gene

HapMap Linkage Disequilibrium report
ZSCAN5C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZSCAN5C Gene

Disorders for ZSCAN5C Gene

No disorders were found for ZSCAN5C Gene.

No data available for UniProtKB/Swiss-Prot for ZSCAN5C Gene

Publications for ZSCAN5C Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4

Products for ZSCAN5C Gene

Sources for ZSCAN5C Gene

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