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Aliases for ZSCAN5B Gene

Aliases for ZSCAN5B Gene

  • Zinc Finger And SCAN Domain Containing 5B 2 3
  • Zinc Finger And SCAN Domain-Containing Protein 5B 3
  • ZNF495B 3
  • ZNF371 3

External Ids for ZSCAN5B Gene

Summaries for ZSCAN5B Gene

GeneCards Summary for ZSCAN5B Gene

ZSCAN5B (Zinc Finger And SCAN Domain Containing 5B) is a Protein Coding gene. GO annotations related to this gene include sequence-specific DNA binding RNA polymerase II transcription factor activity. An important paralog of this gene is ZSCAN5C.

UniProtKB/Swiss-Prot for ZSCAN5B Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN5B Gene

Genomics for ZSCAN5B Gene

Genomic Location for ZSCAN5B Gene

Start:
56,189,570 bp from pter
End:
56,197,920 bp from pter
Size:
8,351 bases
Orientation:
Minus strand

Genomic View for ZSCAN5B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZSCAN5B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN5B Gene

Regulatory Elements for ZSCAN5B Gene

Proteins for ZSCAN5B Gene

  • Protein details for ZSCAN5B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NJL1-ZSA5B_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 5B
    Protein Accession:
    A6NJL1
    Secondary Accessions:

    Protein attributes for ZSCAN5B Gene

    Size:
    495 amino acids
    Molecular mass:
    55826 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZSCAN5B Gene

Proteomics data for ZSCAN5B Gene at MOPED

Post-translational modifications for ZSCAN5B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZSCAN5B Gene

No data available for DME Specific Peptides for ZSCAN5B Gene

Domains for ZSCAN5B Gene

Gene Families for ZSCAN5B Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

UniProtKB/Swiss-Prot:

ZSA5B_HUMAN
Domain:
  • Contains 1 SCAN box domain.:
    • A6NJL1
Similarity:
  • Contains 5 C2H2-type zinc fingers.:
    • A6NJL1
genes like me logo Genes that share domains with ZSCAN5B: view

Function for ZSCAN5B Gene

Molecular function for ZSCAN5B Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZSCAN5B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000981 sequence-specific DNA binding RNA polymerase II transcription factor activity IBA --
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN5B: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZSCAN5B Gene

Localization for ZSCAN5B Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN5B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZSCAN5B Gene COMPARTMENTS Subcellular localization image for ZSCAN5B gene
Compartment Confidence
nucleus 3

Gene Ontology (GO) - Cellular Components for ZSCAN5B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
genes like me logo Genes that share ontologies with ZSCAN5B: view

Pathways for ZSCAN5B Gene

SuperPathways for ZSCAN5B Gene

No Data Available

Interacting Proteins for ZSCAN5B Gene

Gene Ontology (GO) - Biological Process for ZSCAN5B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated --
GO:0006355 regulation of transcription, DNA-templated --
GO:0006357 regulation of transcription from RNA polymerase II promoter IBA --
GO:0006366 transcription from RNA polymerase II promoter IBA --
genes like me logo Genes that share ontologies with ZSCAN5B: view

No data available for Pathways by source for ZSCAN5B Gene

Transcripts for ZSCAN5B Gene

mRNA/cDNA for ZSCAN5B Gene

Unigene Clusters for ZSCAN5B Gene

Zinc finger and SCAN domain containing 5B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN5B Gene

No ASD Table

Relevant External Links for ZSCAN5B Gene

GeneLoc Exon Structure for
ZSCAN5B
ECgene alternative splicing isoforms for
ZSCAN5B

Expression for ZSCAN5B Gene

mRNA expression in normal human tissues for ZSCAN5B Gene

mRNA differential expression in normal tissues according to GTEx for ZSCAN5B Gene

This gene is overexpressed in Testis (19.1).

SOURCE GeneReport for Unigene cluster for ZSCAN5B Gene Hs.132130

genes like me logo Genes that share expressions with ZSCAN5B: view

Orthologs for ZSCAN5B Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN5B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN5B 36
  • 97.91 (n)
  • 95.35 (a)
ZSCAN5B 37
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 37
  • 47 (a)
ManyToMany
-- 37
  • 49 (a)
ManyToMany
-- 37
  • 43 (a)
ManyToMany
-- 37
  • 47 (a)
ManyToMany
-- 37
  • 45 (a)
ManyToMany
-- 37
  • 42 (a)
ManyToMany
-- 37
  • 44 (a)
ManyToMany
-- 37
  • 43 (a)
ManyToMany
LOC790324 36
  • 72.55 (n)
  • 64.71 (a)
mouse
(Mus musculus)
Mammalia Zscan5b 36
  • 58.94 (n)
  • 47.54 (a)
Zscan5b 16
Zscan5b 37
  • 44 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Zscan5b 36
  • 58.37 (n)
  • 45.78 (a)
Species with no ortholog for ZSCAN5B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN5B Gene

ENSEMBL:
Gene Tree for ZSCAN5B (if available)
TreeFam:
Gene Tree for ZSCAN5B (if available)

Paralogs for ZSCAN5B Gene

Paralogs for ZSCAN5B Gene

Pseudogenes.org Pseudogenes for ZSCAN5B Gene

genes like me logo Genes that share paralogs with ZSCAN5B: view

Variants for ZSCAN5B Gene

Sequence variations from dbSNP and Humsavar for ZSCAN5B Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs527025 - 56,191,879(+) CCTGG(A/G)CAGGA reference, missense
rs553611 -- 56,192,467(+) CCTAC(G/T)TTCCA intron-variant
rs892183 - 56,190,405(+) GGAGG(A/T)GGCAT missense, reference
rs892184 -- 56,190,409(+) GAGGC(A/G)TCTGG synonymous-codon, reference
rs1966647 -- 56,197,736(+) CACCT(C/T)CTTCC utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for ZSCAN5B Gene

Variant ID Type Subtype PubMed ID
dgv206n21 CNV Loss 19592680
nsv912516 CNV Gain 21882294
esv2663363 CNV Deletion 23128226
nsv828646 CNV Loss 20364138
nsv828647 CNV Loss 20364138
esv5726 OTHER Inversion 19470904

Relevant External Links for ZSCAN5B Gene

HapMap Linkage Disequilibrium report
ZSCAN5B

Disorders for ZSCAN5B Gene

No disorders were found for ZSCAN5B Gene.

No data available for UniProtKB/Swiss-Prot for ZSCAN5B Gene

Publications for ZSCAN5B Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for ZSCAN5B Gene

Sources for ZSCAN5B Gene

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