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Aliases for ZSCAN30 Gene

Aliases for ZSCAN30 Gene

  • Zinc Finger And SCAN Domain Containing 30 2 3
  • Zinc Finger Protein 397 Opposite Strand 2 3 4
  • Zinc Finger Protein 397OS 3 4
  • ZNF397 Opposite Strand 2 3
  • ZNF397OS 3 4
  • ZNF-WYM 3 4
  • Zinc Finger And SCAN Domain-Containing Protein 30 3
  • ZNF917 3

External Ids for ZSCAN30 Gene

Previous HGNC Symbols for ZSCAN30 Gene

  • ZNF397OS

Previous GeneCards Identifiers for ZSCAN30 Gene

  • GC18M032833
  • GC18M029690

Summaries for ZSCAN30 Gene

GeneCards Summary for ZSCAN30 Gene

ZSCAN30 (Zinc Finger And SCAN Domain Containing 30) is a Protein Coding gene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZNF396.

UniProtKB/Swiss-Prot for ZSCAN30 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN30 Gene

Genomics for ZSCAN30 Gene

Genomic Location for ZSCAN30 Gene

Start:
35,251,058 bp from pter
End:
35,290,248 bp from pter
Size:
39,191 bases
Orientation:
Minus strand

Genomic View for ZSCAN30 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZSCAN30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN30 Gene

No data available for Regulatory Elements for ZSCAN30 Gene

Proteins for ZSCAN30 Gene

  • Protein details for ZSCAN30 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86W11-ZSC30_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 30
    Protein Accession:
    Q86W11
    Secondary Accessions:
    • B4E0N0
    • Q6ZNB3
    • Q96PN3

    Protein attributes for ZSCAN30 Gene

    Size:
    494 amino acids
    Molecular mass:
    56364 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAL26786.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305};

    Alternative splice isoforms for ZSCAN30 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZSCAN30 Gene

Proteomics data for ZSCAN30 Gene at MOPED

Post-translational modifications for ZSCAN30 Gene

  • Ubiquitination at Lys439
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for ZSCAN30 Gene

Domains for ZSCAN30 Gene

Gene Families for ZSCAN30 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Suggested Antigen Peptide Sequences for ZSCAN30 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86W11

UniProtKB/Swiss-Prot:

ZSC30_HUMAN :
  • Q86W11
Domain:
  • Contains 1 SCAN box domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 7 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZSCAN30: view

Function for ZSCAN30 Gene

Molecular function for ZSCAN30 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZSCAN30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN30: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZSCAN30 Gene

Localization for ZSCAN30 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN30 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZSCAN30 Gene COMPARTMENTS Subcellular localization image for ZSCAN30 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for ZSCAN30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZSCAN30: view

Pathways for ZSCAN30 Gene

SuperPathways for ZSCAN30 Gene

No Data Available

Interacting Proteins for ZSCAN30 Gene

Gene Ontology (GO) - Biological Process for ZSCAN30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZSCAN30: view

No data available for Pathways by source for ZSCAN30 Gene

Transcripts for ZSCAN30 Gene

mRNA/cDNA for ZSCAN30 Gene

(9) Additional mRNA sequences :
(6) REFSEQ mRNAs :
(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZSCAN30 Gene

Zinc finger and SCAN domain containing 30:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN30 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b
SP1: - -
SP2: -
SP3: -

Relevant External Links for ZSCAN30 Gene

GeneLoc Exon Structure for
ZSCAN30
ECgene alternative splicing isoforms for
ZSCAN30

Expression for ZSCAN30 Gene

mRNA expression in normal human tissues for ZSCAN30 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZSCAN30 Gene

SOURCE GeneReport for Unigene cluster for ZSCAN30 Gene Hs.619840

genes like me logo Genes that share expressions with ZSCAN30: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZSCAN30 Gene

Orthologs for ZSCAN30 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN30 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN30 35
  • 99.66 (n)
  • 99.19 (a)
ZSCAN30 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZSCAN30 35
  • 83.2 (n)
  • 77.24 (a)
dog
(Canis familiaris)
Mammalia ZSCAN30 35
  • 84.93 (n)
  • 80.04 (a)
ZSCAN30 36
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zscan30 35
  • 74.69 (n)
  • 63.27 (a)
Zscan30 16
Zscan30 36
  • 66 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZSCAN30 36
  • 56 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zscan30 35
  • 73.4 (n)
  • 61.84 (a)
Species with no ortholog for ZSCAN30:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN30 Gene

ENSEMBL:
Gene Tree for ZSCAN30 (if available)
TreeFam:
Gene Tree for ZSCAN30 (if available)

Paralogs for ZSCAN30 Gene

Selected SIMAP similar genes for ZSCAN30 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with ZSCAN30: view

Variants for ZSCAN30 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN30 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type MAF
rs1047293 -- 35,262,811(+) TGGCA(C/G)GAAAG intron-variant
rs1865377 -- 35,275,187(+) TTCTT(A/T)TCTAT intron-variant
rs2164105 -- 35,284,240(+) agtgc(A/C)tgctg intron-variant
rs2422268 -- 35,260,803(+) tgtac(A/G)ttgtc intron-variant
rs3084116 -- 35,278,100(+) TATAT(-/TA)TGTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZSCAN30 Gene

Variant ID Type Subtype PubMed ID
esv270226 CNV Insertion 20981092

Relevant External Links for ZSCAN30 Gene

HapMap Linkage Disequilibrium report
ZSCAN30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZSCAN30 Gene

Disorders for ZSCAN30 Gene

No disorders were found for ZSCAN30 Gene.

No data available for UniProtKB/Swiss-Prot for ZSCAN30 Gene

Publications for ZSCAN30 Gene

  1. Identification and characterization of two novel human SCAN domain- containing zinc finger genes ZNF396 and ZNF397. (PMID: 12801647) Wu Y. … Zhao S. (Gene 2003) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  5. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PMID: 19413330) Gauci S. … Mohammed S. (Anal. Chem. 2009) 4

Products for ZSCAN30 Gene

Sources for ZSCAN30 Gene

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