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Aliases for ZSCAN30 Gene

Aliases for ZSCAN30 Gene

  • Zinc Finger And SCAN Domain Containing 30 2 3 5
  • Zinc Finger Protein 397 Opposite Strand 2 3 4
  • Zinc Finger Protein 397OS 3 4
  • ZNF397 Opposite Strand 2 3
  • ZNF397OS 3 4
  • ZNF-WYM 3 4
  • Zinc Finger And SCAN Domain-Containing Protein 30 3
  • ZNF917 3

External Ids for ZSCAN30 Gene

Previous HGNC Symbols for ZSCAN30 Gene

  • ZNF397OS

Previous GeneCards Identifiers for ZSCAN30 Gene

  • GC18M032833
  • GC18M029690

Summaries for ZSCAN30 Gene

GeneCards Summary for ZSCAN30 Gene

ZSCAN30 (Zinc Finger And SCAN Domain Containing 30) is a Protein Coding gene. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZNF397.

UniProtKB/Swiss-Prot for ZSCAN30 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN30 Gene

Genomics for ZSCAN30 Gene

Regulatory Elements for ZSCAN30 Gene

Enhancers for ZSCAN30 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18F035325 0.6 ENCODE 12.3 -34.9 -34863 0.2 ZSCAN30 ENSG00000274918 GC18M035337
GH18F035268 1 Ensembl ENCODE 11.9 +21.2 21191 0.3 ZSCAN30 ENSG00000274184 PIR57805
GH18F035266 0.2 ENCODE 11.9 +22.5 22538 1.8 USF1 L3MBTL2 CEBPB REST ETS1 POLR2A ZBTB33 TRIM28 MGA ZSCAN30 ZNF24 ENSG00000274184 ENSG00000279989
GH18F035037 1.4 FANTOM5 ENCODE 10.7 +249.3 249263 6.6 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 MAPRE2 ENSG00000268573 ENSG00000267583 ZSCAN30 ZNF397 ENSG00000267397 ZNF24 ENSG00000280096
GH18F035388 1.3 Ensembl ENCODE 7.6 -99.1 -99107 1.0 MTA2 ZSCAN30 ZNF24 RPL7AP67 LOC105372063
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZSCAN30 on UCSC Golden Path with GeneCards custom track

Promoters for ZSCAN30 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000667899 -41 2601 HDGF PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1

Genomic Location for ZSCAN30 Gene

Chromosome:
18
Start:
35,251,058 bp from pter
End:
35,290,259 bp from pter
Size:
39,202 bases
Orientation:
Minus strand

Genomic View for ZSCAN30 Gene

Genes around ZSCAN30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN30 Gene

Proteins for ZSCAN30 Gene

  • Protein details for ZSCAN30 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86W11-ZSC30_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 30
    Protein Accession:
    Q86W11
    Secondary Accessions:
    • B4E0N0
    • Q6ZNB3
    • Q96PN3

    Protein attributes for ZSCAN30 Gene

    Size:
    494 amino acids
    Molecular mass:
    56364 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAL26786.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305};

    Alternative splice isoforms for ZSCAN30 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZSCAN30 Gene

Post-translational modifications for ZSCAN30 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZSCAN30 Gene

Domains & Families for ZSCAN30 Gene

Gene Families for ZSCAN30 Gene

Suggested Antigen Peptide Sequences for ZSCAN30 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86W11

UniProtKB/Swiss-Prot:

ZSC30_HUMAN :
  • Contains 1 SCAN box domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 7 C2H2-type zinc fingers.
Domain:
  • Contains 1 SCAN box domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 7 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZSCAN30: view

Function for ZSCAN30 Gene

Molecular function for ZSCAN30 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZSCAN30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IEA,IBA --
GO:0043565 sequence-specific DNA binding IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN30: view

Phenotypes for ZSCAN30 Gene

genes like me logo Genes that share phenotypes with ZSCAN30: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZSCAN30 Gene

Localization for ZSCAN30 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN30 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZSCAN30 Gene COMPARTMENTS Subcellular localization image for ZSCAN30 gene
Compartment Confidence
nucleus 5
cytosol 3

Gene Ontology (GO) - Cellular Components for ZSCAN30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA,IBA --
genes like me logo Genes that share ontologies with ZSCAN30: view

Pathways & Interactions for ZSCAN30 Gene

SuperPathways for ZSCAN30 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZSCAN30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZSCAN30: view

No data available for Pathways by source and SIGNOR curated interactions for ZSCAN30 Gene

Transcripts for ZSCAN30 Gene

mRNA/cDNA for ZSCAN30 Gene

(14) REFSEQ mRNAs :
(9) Additional mRNA sequences :
(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZSCAN30 Gene

Zinc finger and SCAN domain containing 30:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN30 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b
SP1: - -
SP2: -
SP3: -

Relevant External Links for ZSCAN30 Gene

GeneLoc Exon Structure for
ZSCAN30
ECgene alternative splicing isoforms for
ZSCAN30

Expression for ZSCAN30 Gene

mRNA expression in normal human tissues for ZSCAN30 Gene

Protein differential expression in normal tissues from HIPED for ZSCAN30 Gene

This gene is overexpressed in Adipocyte (39.0) and Spinal cord (30.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZSCAN30 Gene



Protein tissue co-expression partners for ZSCAN30 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZSCAN30 Gene:

ZSCAN30

SOURCE GeneReport for Unigene cluster for ZSCAN30 Gene:

Hs.619840
genes like me logo Genes that share expression patterns with ZSCAN30: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZSCAN30 Gene

Orthologs for ZSCAN30 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN30 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN30 34 35
  • 99.66 (n)
dog
(Canis familiaris)
Mammalia ZSCAN30 34 35
  • 84.93 (n)
cow
(Bos Taurus)
Mammalia ZSCAN30 34
  • 83.2 (n)
mouse
(Mus musculus)
Mammalia Zscan30 34 16 35
  • 74.69 (n)
rat
(Rattus norvegicus)
Mammalia Zscan30 34
  • 73.4 (n)
oppossum
(Monodelphis domestica)
Mammalia ZSCAN30 35
  • 56 (a)
OneToOne
Species where no ortholog for ZSCAN30 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN30 Gene

ENSEMBL:
Gene Tree for ZSCAN30 (if available)
TreeFam:
Gene Tree for ZSCAN30 (if available)

Paralogs for ZSCAN30 Gene

(474) SIMAP similar genes for ZSCAN30 Gene using alignment to 7 proteins:

Pseudogenes.org Pseudogenes for ZSCAN30 Gene

genes like me logo Genes that share paralogs with ZSCAN30: view

Variants for ZSCAN30 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN30 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs10432174 -- 35,266,252(+) AGAGG(C/T)TGAAC intron-variant
rs10432175 -- 35,267,097(+) CAACA(C/T)AGTGA intron-variant
rs10432176 -- 35,267,456(+) CGCCC(C/T)GCTGG intron-variant
rs10438943 -- 35,288,992(+) agaca(A/G)agtct intron-variant, upstream-variant-2KB
rs10438944 -- 35,289,186(+) ggcca(A/G)gctgg intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZSCAN30 Gene

Variant ID Type Subtype PubMed ID
esv3305949 CNV mobile element insertion 20981092
esv3390534 CNV insertion 20981092
esv3642197 CNV gain 21293372
nsv1059793 CNV gain 25217958

Variation tolerance for ZSCAN30 Gene

Residual Variation Intolerance Score: 66.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.57; 72.25% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZSCAN30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZSCAN30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZSCAN30 Gene

Disorders for ZSCAN30 Gene

Relevant External Links for ZSCAN30

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZSCAN30

No disorders were found for ZSCAN30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZSCAN30 Gene

Publications for ZSCAN30 Gene

  1. Identification and characterization of two novel human SCAN domain- containing zinc finger genes ZNF396 and ZNF397. (PMID: 12801647) Wu Y. … Zhao S. (Gene 2003) 2 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PMID: 19413330) Gauci S. … Mohammed S. (Anal. Chem. 2009) 4 64
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3 64

Products for ZSCAN30 Gene

Sources for ZSCAN30 Gene

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