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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZSCAN29 Gene

protein-coding   GIFtS: 48
GCID: GC15M043650

Zinc Finger And SCAN Domain Containing 29

(Previous name: zinc finger protein 690)
(Previous symbol: ZNF690)
Microbiology & Infectious Diseases Congress
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Zinc Finger And SCAN Domain Containing 291 2     KOX31-Like Zinc Finger Protein2
Zinc Finger Protein 6901 2 3     Zinc Finger And SCAN Domain-Containing Protein 292
ZNF6901 2 3     EC 2.1.1.438
Zfp6902     EC 2.7.10.18

External Ids:    HGNC: 266731   Entrez Gene: 1460502   Ensembl: ENSG000001402657   UniProtKB: Q8IWY83   

Export aliases for ZSCAN29 gene to outside databases

Previous GC identifers: GC15M041443 GC15M020498


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZSCAN29 Gene: 
ZSCAN29 (zinc finger and SCAN domain containing 29) is a protein-coding gene. Diseases associated with ZSCAN29 include congenital dyserythropoietic anemia type i, and congenital dyserythropoietic anemia. GO annotations related to this gene include DNA binding and sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ENSG00000268171.

UniProtKB/Swiss-Prot: ZSC29_HUMAN, Q8IWY8
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000015.9  NT_010194.17  NC_018926.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZSCAN29 gene promoter:
         GR   GR-beta   C/EBPalpha   CHOP-10   PPAR-gamma1   POU2F1   POU2F1a   PPAR-gamma2   GR-alpha   RSRFC4   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): ZSCAN29 promoter sequence
   Search SABiosciences Chromatin IP Primers for ZSCAN29

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZSCAN29


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 15q15.3   Ensembl cytogenetic band:  15q15.3   HGNC cytogenetic band: 15q15.3

ZSCAN29 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZSCAN29 gene location

GeneLoc information about chromosome 15         GeneLoc Exon Structure

GeneLoc location for GC15M043650:  view genomic region     (about GC identifiers)

Start:
43,650,370 bp from pter      End:
43,663,223 bp from pter
Size:
12,854 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZSC29_HUMAN, Q8IWY8 (See protein sequence)
Recommended Name: Zinc finger and SCAN domain-containing protein 29  
Size: 852 amino acids; 96719 Da
Subcellular location: Nucleus (Probable)
Secondary accessions: B3KVB9 Q32M75 Q32M76 Q8NA40
Alternative splicing: 4 isoforms:  Q8IWY8-1   Q8IWY8-2   Q8IWY8-3   Q8IWY8-4   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ZSCAN29: NX_Q8IWY8

Explore proteomics data for ZSCAN29 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q8IWY8

  • 2 DME Specific Peptides for ZSCAN29 (Q8IWY8)
     ALVSVRV  HQRTHTGEKPY 

    ZSCAN29 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZSCAN29 Protein Expression
    REFSEQ proteins: NP_689668.3  
    ENSEMBL proteins: 
     ENSP00000380174   ENSP00000457835   ENSP00000456089   ENSP00000456883   ENSP00000454548  
     ENSP00000458119   ENSP00000380170  

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    Cloud-Clone Corp. Proteins for ZSCAN29 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IBA--

    ZSCAN29 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    ZNF: Zinc fingers, C2H2-type

    5 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR008916 Retrov_capsid_C
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2
     IPR003309 Tscrpt_reg_SCAN

    Graphical View of Domain Structure for InterPro Entry Q8IWY8

    ProtoNet protein and cluster: Q8IWY8

    2 Blocks protein domains:
    IPB003309 Transcriptional regulator SCAN
    IPB007086 C2H2-type zinc finger signature


    UniProtKB/Swiss-Prot: ZSC29_HUMAN, Q8IWY8
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 6 C2H2-type zinc fingers
    Similarity: Contains 1 SCAN box domain


    ZSCAN29 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZSC29_HUMAN, Q8IWY8
    Function: May be involved in transcriptional regulation

         Enzyme Numbers (IUBMB): EC 2.1.1.432 EC 2.7.10.12

         Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000981sequence-specific DNA binding RNA polymerase II transcription factor activity IBA--
    GO:0003677DNA binding IEA--
    GO:0003700sequence-specific DNA binding transcription factor activity ----
    GO:0008270zinc ion binding ----
    GO:0046872metal ion binding IEA--
         
    ZSCAN29 for ontologies           About GeneDecksing


    Animal Models:
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    SwitchGear 3'UTR luciferase reporter plasmidZSCAN29 3' UTR sequence
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZSCAN29

    Gene Ontology (GO): 4 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006355regulation of transcription, DNA-dependent ----
    GO:0006357regulation of transcription from RNA polymerase II promoter IBA--
    GO:0006366transcription from RNA polymerase II promoter IBA--
    GO:0016032viral process ----

    ZSCAN29 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZSCAN29 (ZSC29)

    Search CenterWatch for drugs/clinical trials and news about ZSCAN29 / ZSC29

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZSCAN29 gene: 
    NM_152455.3  

    Unigene Cluster for ZSCAN29:

    Zinc finger and SCAN domain containing 29
    Hs.418287  [show with all ESTs]
    Unigene Representative Sequence: NM_152455
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000396976(uc001zrj.1 uc001zrk.1 uc010bdf.1 uc001zrl.1)
    ENST00000566849(uc001zrm.3) ENST00000562072 ENST00000568898 ENST00000570181
    ENST00000561661 ENST00000563508 ENST00000396972(uc010bdg.1)
    Congresses - knowledge worth sharing:  
    European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) 10 - 13 May 2014

    miRNA
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    8/28 QIAGEN miScript miRNA Assays for microRNAs that regulate ZSCAN29 (see all 28):
    hsa-miR-30c hsa-miR-125a-5p hsa-miR-642a hsa-miR-188-5p hsa-miR-200a hsa-miR-30d hsa-miR-650 hsa-miR-449a
    SwitchGear 3'UTR luciferase reporter plasmidZSCAN29 3' UTR sequence
    Inhib. RNA
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZSCAN29

    Additional mRNA sequence: 

    AF525399.1 AK023525.1 AK093186.1 AK093377.1 AK098289.1 AK122788.1 AK123753.1 BC017179.2 
    BC040682.1 BC043612.1 BC062551.1 BC109270.1 BC109271.1 

    8 DOTS entries:

    DT.311211  DT.99950834  DT.101983030  DT.310605  DT.121049059  DT.97808781  DT.121049134  DT.91801390 

    24/102 AceView cDNA sequences (see all 102):

    BC040682 AI368137 AX747979 BU931150 AF525399 BU849689 AI932247 AI497994 
    BQ061821 BM929580 BM727568 BX111371 BU674110 NM_152455 BC017179 BM792047 
    BQ055801 BU556760 CR617733 BC043612 AK093186 AA868761 AW020943 BQ056534 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN29    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b · 4c · 4d ^ 5a · 5b
    SP1:                                                  -                 -               
    SP2:                                                  -           -     -               
    SP3:                                                                                    
    SP4:                                -                                                   
    SP5:                                -     -     -     -     -     -     -               


    ECgene alternative splicing isoforms for ZSCAN29

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZSCAN29 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCCAGATGGC
    ZSCAN29 Expression
    About this image


    See ZSCAN29 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZSCAN29

    SOURCE GeneReport for Unigene cluster: Hs.418287
        SABiosciences Custom PCR Arrays for ZSCAN29
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for ZSCAN29 gene from 2/7 species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zscan291 , 5 zinc finger SCAN domains 291, 5 86.42(n)1
    83.53(a)1
      2 (60.37 cM)5
    993341  NM_178889.41  NP_849220.31 
     1211582735 
    zebrafish
    (Danio rerio)
    Actinopterygii ZSCAN296
    zinc finger and SCAN domain containing 29
    17(a)
    1 → many
    21(13639014-13640680)


    ENSEMBL Gene Tree for ZSCAN29 (if available)
    TreeFam Gene Tree for ZSCAN29 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZSCAN29 gene
    ENSG000002681712  ZSCAN322  ZKSCAN22  ZSCAN202  
    18/466 SIMAP similar genes for ZSCAN29 using alignment to 7 protein entries:     ZSC29_HUMAN (see all proteins) (see all similar genes):
    SCAND1    ZNF394    ZNF197    ZNF396    ZNF213    ZNF78L1
    LOC100128510    kr-znf3    ZNF444    ZNF582    ZFS-5    ZKSCAN5
    ZNF132    ZNF211    ZNF714    ZNF75CP    ZNF792    ZNF818P

    ZSCAN29 for paralogs           About GeneDecksing


    3 Pseudogenes.org Pseudogenes for ZSCAN29
    PGOHUM00000238678 PGOHUM00000262455 PGOHUM00000262456


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/279 SNPs in ZSCAN29 are shown (see all 279)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 15 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1418805951,2
    Cuntested143654034(+) GATACC/TGGGGA 2 Q R mis11Minor allele frequency- T:0.00NA 4550
    VAR_0574594
    ----see VAR_0574592 G S mis40--------
    VAR_0599494
    ----see VAR_0599492 R G mis40--------
    rs1118146871,2
    F--43649883(+) TCAAGT/ACCAGC 1 -- ds50011Minor allele frequency- A:0.50CSA 2
    rs750385021,2
    C,F--43649898(+) ACAACG/ATAGAC 1 -- ds50011Minor allele frequency- A:0.04WA 118
    rs1424769721,2
    C--43649970(+) ATCTAC/TTGGGG 1 -- ds50010--------
    rs1508959981,2
    --43650202(+) AATCTA/GACTTA 1 -- ds50010--------
    rs40756741,2
    C,F,H--43650230(+) TAAAGA/CTTCAG 1 -- ds500125Minor allele frequency- N:0.00NS EA NA WA CSA 2558
    rs1856184301,2
    --43650244(+) AGCATA/GCTTCT 1 -- ds50010--------
    rs1158063631,2
    F--43650245(+) GCATAC/TTTCTA 1 -- ds50011Minor allele frequency- T:0.04WA 118

    HapMap Linkage Disequilibrium report for ZSCAN29 (43650370 - 43663223 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 8 variations for ZSCAN29:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2430486CNV Deletion19546169
    esv2749625CNV Deletion23290073
    esv2020159CNV Deletion18987734
    esv1003756CNV Deletion20482838
    esv2618501CNV Deletion19546169
    nsv1513CNV Insertion18451855
    nsv1512CNV Loss18451855
    esv8406CNV Loss19470904


    Human Gene Mutation Database (HGMD): ZSCAN29
    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    3 diseases for ZSCAN29:    About MalaCards
    congenital dyserythropoietic anemia type i    congenital dyserythropoietic anemia    anemia


    ZSCAN29 for disorders           About GeneDecksing


    Export disorders for ZSCAN29 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZSCAN29 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ZSCAN29)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Congenital dyserythropoietic anemia type I is caused by mutations in codanin-1. (PubMed id 12434312)1, 2, 3 Dgany O.... Tamary H. (2002)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    5. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (2008)
    6. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 146050 HGNC: 26673 AceView: FLJ35867 Ensembl:ENSG00000140265 euGenes: HUgn146050
    ECgene: ZSCAN29 H-InvDB: ZSCAN29

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZSCAN29 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ZSCAN29 gene:
    Search GeneIP for patents involving ZSCAN29

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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