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Aliases for ZSCAN25 Gene

Aliases for ZSCAN25 Gene

  • Zinc Finger And SCAN Domain Containing 25 2 3
  • Zinc Finger Protein 498 2 3 4
  • ZNF498 3 4
  • Zinc Finger And SCAN Domain-Containing Protein 25 3

External Ids for ZSCAN25 Gene

Previous HGNC Symbols for ZSCAN25 Gene

  • ZNF498

Previous GeneCards Identifiers for ZSCAN25 Gene

  • GC07P099215

Summaries for ZSCAN25 Gene

Entrez Gene Summary for ZSCAN25 Gene

  • This gene encodes a protein that bears some similarity to zinc finger proteins, which are involved in DNA binding and protein-protein interactions. Multiple alternatively spliced transcript variants have been identified, but the full-length nature for most of them has not been determined. [provided by RefSeq, Jul 2008]

GeneCards Summary for ZSCAN25 Gene

ZSCAN25 (Zinc Finger And SCAN Domain Containing 25) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZNF202.

UniProtKB/Swiss-Prot for ZSCAN25 Gene

  • May be involved in transcriptional regulation.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN25 Gene

Genomics for ZSCAN25 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ZSCAN25 Gene

Start:
99,616,946 bp from pter
End:
99,677,578 bp from pter
Size:
60,633 bases
Orientation:
Plus strand

Genomic View for ZSCAN25 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZSCAN25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN25 Gene

No data available for Regulatory Elements for ZSCAN25 Gene

Proteins for ZSCAN25 Gene

  • Protein details for ZSCAN25 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NSZ9-ZSC25_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 25
    Protein Accession:
    Q6NSZ9
    Secondary Accessions:
    • A4D290
    • D6W5T5
    • Q14C82
    • Q14C99
    • Q5EBM9
    • Q6DJZ0
    • Q6N032
    • Q6ZML3

    Protein attributes for ZSCAN25 Gene

    Size:
    544 amino acids
    Molecular mass:
    61474 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAI14574.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAI14942.1; Type=Erroneous translation; Note=Wrong choice of frame.; Evidence={ECO:0000305}; Sequence=BAD18712.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=EAL23869.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for ZSCAN25 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZSCAN25 Gene

Proteomics data for ZSCAN25 Gene at MOPED

Post-translational modifications for ZSCAN25 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZSCAN25 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ZSCAN25 Gene

Domains for ZSCAN25 Gene

Gene Families for ZSCAN25 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Graphical View of Domain Structure for InterPro Entry

Q6NSZ9

UniProtKB/Swiss-Prot:

ZSC25_HUMAN :
  • Q6NSZ9
Domain:
  • Contains 1 SCAN box domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 7 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZSCAN25: view

No data available for Suggested Antigen Peptide Sequences for ZSCAN25 Gene

Function for ZSCAN25 Gene

Molecular function for ZSCAN25 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZSCAN25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN25: view

Phenotypes for ZSCAN25 Gene

genes like me logo Genes that share phenotypes with ZSCAN25: view

Animal Model Products

CRISPR Products

miRNA for ZSCAN25 Gene

miRTarBase miRNAs that target ZSCAN25

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZSCAN25 Gene

Localization for ZSCAN25 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN25 Gene

Gene Ontology (GO) - Cellular Components for ZSCAN25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZSCAN25: view

No data available for Subcellular locations from COMPARTMENTS for ZSCAN25 Gene

Pathways for ZSCAN25 Gene

SuperPathways for ZSCAN25 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZSCAN25: view

Pathways by source for ZSCAN25 Gene

2 Reactome pathways for ZSCAN25 Gene

Interacting Proteins for ZSCAN25 Gene

Gene Ontology (GO) - Biological Process for ZSCAN25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZSCAN25: view

Transcripts for ZSCAN25 Gene

Unigene Clusters for ZSCAN25 Gene

Zinc finger and SCAN domain containing 25:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZSCAN25

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ZSCAN25
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN25 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7a · 7b · 7c ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11
SP1: - - - -
SP2: -
SP3: -
SP4: - -
SP5: - - - - - - - - - - - - -
SP6: -
SP7: - - - - - -
SP8: - - - - - - - - - - - -
SP9: - - - -

Relevant External Links for ZSCAN25 Gene

GeneLoc Exon Structure for
ZSCAN25
ECgene alternative splicing isoforms for
ZSCAN25

Expression for ZSCAN25 Gene

mRNA expression in normal human tissues for ZSCAN25 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZSCAN25 Gene

SOURCE GeneReport for Unigene cluster for ZSCAN25 Gene Hs.446297

genes like me logo Genes that share expressions with ZSCAN25: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZSCAN25 Gene

Orthologs for ZSCAN25 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN25 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF498 35
  • 99.45 (n)
  • 99.82 (a)
ZNF498 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZSCAN25 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZSCAN25 35
  • 86.58 (n)
  • 90.26 (a)
ZSCAN25 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zscan25 35
  • 83.15 (n)
  • 84.32 (a)
Zscan25 16
Zscan25 36
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ZSCAN25 36
  • 33 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zfp498 35
  • 83.09 (n)
  • 83.39 (a)
Species with no ortholog for ZSCAN25:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN25 Gene

ENSEMBL:
Gene Tree for ZSCAN25 (if available)
TreeFam:
Gene Tree for ZSCAN25 (if available)

Paralogs for ZSCAN25 Gene

Paralogs for ZSCAN25 Gene

Selected SIMAP similar genes for ZSCAN25 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ZSCAN25: view

Variants for ZSCAN25 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN25 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs11734 -- 99,632,145(-) AAAGT(C/G)AGCAA utr-variant-3-prime, intron-variant
rs1002856 -- 99,623,845(+) GGAGG(A/C)TGCTG intron-variant
rs1003009 -- 99,626,336(-) GACCC(A/G)GAGTC intron-variant
rs1003010 -- 99,626,116(-) TACAA(C/T)CCAGA intron-variant
rs1859690 -- 99,629,549(-) AGGTA(C/T)TCTCT reference, synonymous-codon, intron-variant

Relevant External Links for ZSCAN25 Gene

HapMap Linkage Disequilibrium report
ZSCAN25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZSCAN25 Gene

Disorders for ZSCAN25 Gene

No disorders were found for ZSCAN25 Gene.

No data available for UniProtKB/Swiss-Prot for ZSCAN25 Gene

Publications for ZSCAN25 Gene

  1. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4
  2. Zinc finger proteins: new insights into structural and functional diversity. (PMID: 11179890) Laity J.H. … Wright P.E. (Curr. Opin. Struct. Biol. 2001) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Genome-wide association study of anthropometric traits in Korcula Island, Croatia. (PMID: 19260139) Polasek O. … Rudan I. (Croat. Med. J. 2009) 23
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for ZSCAN25 Gene

Sources for ZSCAN25 Gene

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