Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZSCAN23 Gene

Aliases for ZSCAN23 Gene

  • Zinc Finger And SCAN Domain Containing 23 2 3
  • Zinc Finger Protein 453 2 3 4
  • Zinc Finger Protein 390 2 3 4
  • ZNF390 3 4
  • ZNF453 3 4
  • Zinc Finger And SCAN Domain-Containing Protein 23 3
  • DJ29K1.3.1 3
  • DJ29K1.3 3

External Ids for ZSCAN23 Gene

Previous HGNC Symbols for ZSCAN23 Gene

  • ZNF453
  • ZNF390

Previous GeneCards Identifiers for ZSCAN23 Gene

  • GC06M028513
  • GC06U901203
  • GC06M028206

Summaries for ZSCAN23 Gene

GeneCards Summary for ZSCAN23 Gene

ZSCAN23 (Zinc Finger And SCAN Domain Containing 23) is a Protein Coding gene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZNF396.

UniProtKB/Swiss-Prot for ZSCAN23 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN23 Gene

Genomics for ZSCAN23 Gene

Regulatory Elements for ZSCAN23 Gene

Genomic Location for ZSCAN23 Gene

Start:
28,431,596 bp from pter
End:
28,443,502 bp from pter
Size:
11,907 bases
Orientation:
Minus strand

Genomic View for ZSCAN23 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZSCAN23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN23 Gene

Proteins for ZSCAN23 Gene

  • Protein details for ZSCAN23 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3MJ62-ZSC23_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 23
    Protein Accession:
    Q3MJ62
    Secondary Accessions:
    • Q96KV9

    Protein attributes for ZSCAN23 Gene

    Size:
    389 amino acids
    Molecular mass:
    44955 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAC44641.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for ZSCAN23 Gene

Proteomics data for ZSCAN23 Gene at MOPED

Post-translational modifications for ZSCAN23 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZSCAN23 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZSCAN23 Gene

Domains for ZSCAN23 Gene

Gene Families for ZSCAN23 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Suggested Antigen Peptide Sequences for ZSCAN23 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q3MJ62

UniProtKB/Swiss-Prot:

ZSC23_HUMAN :
  • Q3MJ62
Domain:
  • Contains 1 SCAN box domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 5 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZSCAN23: view

Function for ZSCAN23 Gene

Molecular function for ZSCAN23 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZSCAN23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN23: view

Animal Model Products

CRISPR Products

miRNA for ZSCAN23 Gene

miRTarBase miRNAs that target ZSCAN23

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZSCAN23 Gene

Localization for ZSCAN23 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN23 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZSCAN23 Gene COMPARTMENTS Subcellular localization image for ZSCAN23 gene
Compartment Confidence
nucleus 3
cytosol 2
plasma membrane 1

Gene Ontology (GO) - Cellular Components for ZSCAN23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with ZSCAN23: view

Pathways for ZSCAN23 Gene

SuperPathways for ZSCAN23 Gene

No Data Available

Interacting Proteins for ZSCAN23 Gene

Gene Ontology (GO) - Biological Process for ZSCAN23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZSCAN23: view

No data available for Pathways by source for ZSCAN23 Gene

Transcripts for ZSCAN23 Gene

mRNA/cDNA for ZSCAN23 Gene

(10) Selected AceView cDNA sequences:
(6) Additional mRNA sequences :
(8) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZSCAN23 Gene

Zinc finger and SCAN domain containing 23:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZSCAN23

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ZSCAN23
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN23 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4
SP1:
SP2: - -

Relevant External Links for ZSCAN23 Gene

GeneLoc Exon Structure for
ZSCAN23
ECgene alternative splicing isoforms for
ZSCAN23

Expression for ZSCAN23 Gene

mRNA expression in normal human tissues for ZSCAN23 Gene

SOURCE GeneReport for Unigene cluster for ZSCAN23 Gene Hs.721841

genes like me logo Genes that share expressions with ZSCAN23: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for ZSCAN23 Gene

Orthologs for ZSCAN23 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN23 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN23 35
  • 99.74 (n)
  • 99.74 (a)
ZSCAN23 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZSCAN23 35
  • 86.08 (n)
  • 82.47 (a)
ZSCAN23 36
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZSCAN23 35
  • 83.65 (n)
  • 79.89 (a)
ZSCAN23 36
  • 76 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZSCAN23 36
  • 72 (a)
OneToOne
Species with no ortholog for ZSCAN23:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN23 Gene

ENSEMBL:
Gene Tree for ZSCAN23 (if available)
TreeFam:
Gene Tree for ZSCAN23 (if available)

Paralogs for ZSCAN23 Gene

Selected SIMAP similar genes for ZSCAN23 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for ZSCAN23 Gene

genes like me logo Genes that share paralogs with ZSCAN23: view

Variants for ZSCAN23 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN23 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs719370 -- 28,436,576(+) CTGAC(C/T)GAAAC intron-variant
rs728122 -- 28,431,347(+) GGACC(A/G)TACCT downstream-variant-500B
rs758396 -- 28,440,574(+) TAAAC(A/G)TACCA intron-variant
rs916403 -- 28,440,481(+) ACATG(A/G)TCTGC intron-variant
rs1361387 -- 28,445,152(+) ctcca(G/T)gtccc upstream-variant-2KB

Relevant External Links for ZSCAN23 Gene

HapMap Linkage Disequilibrium report
ZSCAN23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZSCAN23 Gene

Disorders for ZSCAN23 Gene

No disorders were found for ZSCAN23 Gene.

No data available for UniProtKB/Swiss-Prot for ZSCAN23 Gene

Publications for ZSCAN23 Gene

  1. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ZSCAN23 Gene

Sources for ZSCAN23 Gene

Back to Top

Content