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Aliases for ZSCAN23 Gene

Aliases for ZSCAN23 Gene

  • Zinc Finger And SCAN Domain Containing 23 2 3 5
  • Zinc Finger Protein 453 2 3 4
  • Zinc Finger Protein 390 2 3 4
  • ZNF390 3 4
  • ZNF453 3 4
  • DJ29K1.3.1 3
  • DJ29K1.3 3

External Ids for ZSCAN23 Gene

Previous HGNC Symbols for ZSCAN23 Gene

  • ZNF453
  • ZNF390

Previous GeneCards Identifiers for ZSCAN23 Gene

  • GC06M028513
  • GC06U901203
  • GC06M028399
  • GC06M028206

Summaries for ZSCAN23 Gene

GeneCards Summary for ZSCAN23 Gene

ZSCAN23 (Zinc Finger And SCAN Domain Containing 23) is a Protein Coding gene. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZSCAN16.

UniProtKB/Swiss-Prot for ZSCAN23 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN23 Gene

Genomics for ZSCAN23 Gene

Regulatory Elements for ZSCAN23 Gene

Enhancers for ZSCAN23 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around ZSCAN23 on UCSC Golden Path with GeneCards custom track

Promoters for ZSCAN23 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ZSCAN23 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZSCAN23 Gene

Chromosome:
6
Start:
28,425,531 bp from pter
End:
28,443,974 bp from pter
Size:
18,444 bases
Orientation:
Minus strand

Genomic View for ZSCAN23 Gene

Genes around ZSCAN23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN23 Gene

Proteins for ZSCAN23 Gene

  • Protein details for ZSCAN23 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3MJ62-ZSC23_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 23
    Protein Accession:
    Q3MJ62
    Secondary Accessions:
    • Q96KV9

    Protein attributes for ZSCAN23 Gene

    Size:
    389 amino acids
    Molecular mass:
    44955 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAC44641.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for ZSCAN23 Gene

Proteomics data for ZSCAN23 Gene at MOPED

Post-translational modifications for ZSCAN23 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZSCAN23 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZSCAN23 Gene

Domains & Families for ZSCAN23 Gene

Gene Families for ZSCAN23 Gene

Suggested Antigen Peptide Sequences for ZSCAN23 Gene

Graphical View of Domain Structure for InterPro Entry

Q3MJ62

UniProtKB/Swiss-Prot:

ZSC23_HUMAN :
  • Contains 1 SCAN box domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 5 C2H2-type zinc fingers.
Domain:
  • Contains 1 SCAN box domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 5 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZSCAN23: view

Function for ZSCAN23 Gene

Molecular function for ZSCAN23 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Phenotypes for ZSCAN23 Gene

GenomeRNAi human phenotypes for ZSCAN23:
genes like me logo Genes that share phenotypes with ZSCAN23: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZSCAN23 Gene

Localization for ZSCAN23 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN23 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZSCAN23 Gene COMPARTMENTS Subcellular localization image for ZSCAN23 gene
Compartment Confidence
extracellular 5
nucleus 5
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for ZSCAN23 Gene

Pathways & Interactions for ZSCAN23 Gene

SuperPathways for ZSCAN23 Gene

No Data Available

Interacting Proteins for ZSCAN23 Gene

Gene Ontology (GO) - Biological Process for ZSCAN23 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZSCAN23 Gene

Drugs & Compounds for ZSCAN23 Gene

No Compound Related Data Available

Transcripts for ZSCAN23 Gene

mRNA/cDNA for ZSCAN23 Gene

(8) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZSCAN23 Gene

Zinc finger and SCAN domain containing 23:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN23 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4
SP1:
SP2: - -

Relevant External Links for ZSCAN23 Gene

GeneLoc Exon Structure for
ZSCAN23
ECgene alternative splicing isoforms for
ZSCAN23

Expression for ZSCAN23 Gene

mRNA expression in normal human tissues for ZSCAN23 Gene

SOURCE GeneReport for Unigene cluster for ZSCAN23 Gene Hs.721841

genes like me logo Genes that share expression patterns with ZSCAN23: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for ZSCAN23 Gene

Orthologs for ZSCAN23 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN23 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ZSCAN23 35
  • 86.08 (n)
  • 82.47 (a)
ZSCAN23 36
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZSCAN23 35
  • 83.65 (n)
  • 79.89 (a)
ZSCAN23 36
  • 76 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN23 35
  • 99.74 (n)
  • 99.74 (a)
ZSCAN23 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZSCAN23 36
  • 72 (a)
OneToOne
Species with no ortholog for ZSCAN23:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN23 Gene

ENSEMBL:
Gene Tree for ZSCAN23 (if available)
TreeFam:
Gene Tree for ZSCAN23 (if available)

Paralogs for ZSCAN23 Gene

(427) SIMAP similar genes for ZSCAN23 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for ZSCAN23 Gene

genes like me logo Genes that share paralogs with ZSCAN23: view

Variants for ZSCAN23 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN23 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1339898 -- 28,427,729(+) AAATA(C/T)GTTTC intron-variant, downstream-variant-500B
rs1361387 -- 28,445,152(+) ctcca(G/T)gtccc upstream-variant-2KB
rs6902687 -- 28,445,714(+) atatc(A/C/T)actat upstream-variant-2KB
rs9969098 -- 28,430,971(+) CCATC(G/T)GTCCC intron-variant, utr-variant-3-prime
rs6917130 -- 28,439,044(+) AGGAA(A/G)TGTAC intron-variant

Variation tolerance for ZSCAN23 Gene

Gene Damage Index Score: 0.96; 19.74% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for ZSCAN23 Gene

Disorders for ZSCAN23 Gene

Relevant External Links for ZSCAN23

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZSCAN23

No disorders were found for ZSCAN23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZSCAN23 Gene

Publications for ZSCAN23 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3

Products for ZSCAN23 Gene

Sources for ZSCAN23 Gene

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