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Aliases for ZSCAN20 Gene

Aliases for ZSCAN20 Gene

  • Zinc Finger And SCAN Domain Containing 20 2 3
  • Zinc Finger Protein 31 2 3 4
  • Zinc Finger Protein KOX29 3 4
  • Zinc Finger Protein 360 3 4
  • ZNF360 3 4
  • ZNF31 3 4
  • KOX29 3 4
  • Zinc Finger And SCAN Domain-Containing Protein 20 3
  • Zinc Finger Protein 31 (KOX 29) 2
  • ZFP-31 3

External Ids for ZSCAN20 Gene

Previous Symbols for ZSCAN20 Gene

  • ZNF360
  • ZNF31

Summaries for ZSCAN20 Gene

GeneCards Summary for ZSCAN20 Gene

ZSCAN20 (Zinc Finger And SCAN Domain Containing 20) is a Protein Coding gene. Diseases associated with ZSCAN20 include intermediate charcot-marie-tooth neuropathy. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and chromatin binding. An important paralog of this gene is ZKSCAN2.

UniProtKB/Swiss-Prot for ZSCAN20 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN20 Gene

Genomics for ZSCAN20 Gene

Genomic Location for ZSCAN20 Gene

Start:
33,472,626 bp from pter
End:
33,496,507 bp from pter
Size:
23,882 bases
Orientation:
Plus strand

Genomic View for ZSCAN20 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZSCAN20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN20 Gene

Regulatory Elements for ZSCAN20 Gene

Proteins for ZSCAN20 Gene

  • Protein details for ZSCAN20 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P17040-ZSC20_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 20
    Protein Accession:
    P17040
    Secondary Accessions:
    • A8K2D0
    • B1ALI4
    • B1ALI5
    • B1ALI6
    • Q6ZN23
    • Q96FA9
    • Q96H84

    Protein attributes for ZSCAN20 Gene

    Size:
    1043 amino acids
    Molecular mass:
    117541 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZSCAN20 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZSCAN20 Gene

Proteomics data for ZSCAN20 Gene at MOPED

Post-translational modifications for ZSCAN20 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZSCAN20 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZSCAN20 Gene

Domains for ZSCAN20 Gene

Gene Families for ZSCAN20 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

UniProtKB/Swiss-Prot:

ZSC20_HUMAN
Domain:
  • Contains 1 SCAN box domain.:
    • P17040
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • P17040
Similarity:
  • Contains 10 C2H2-type zinc fingers.:
    • P17040
genes like me logo Genes that share domains with ZSCAN20: view

Function for ZSCAN20 Gene

Molecular function for ZSCAN20 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZSCAN20 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003682 chromatin binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN20: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZSCAN20 Gene

Localization for ZSCAN20 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN20 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZSCAN20 Gene COMPARTMENTS Subcellular localization image for ZSCAN20 gene
Compartment Confidence
mitochondrion 4
nucleus 4

Gene Ontology (GO) - Cellular Components for ZSCAN20 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZSCAN20: view

Pathways for ZSCAN20 Gene

SuperPathways for ZSCAN20 Gene

No Data Available

Interacting Proteins for ZSCAN20 Gene

Selected Interacting proteins: P17040-ZSC20_HUMAN for ZSCAN20 Gene via MINT I2D

Symbol External ID(s) Details
SCAND1

Gene Ontology (GO) - Biological Process for ZSCAN20 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZSCAN20: view

No data available for Pathways by source for ZSCAN20 Gene

Transcripts for ZSCAN20 Gene

Unigene Clusters for ZSCAN20 Gene

Zinc finger and SCAN domain containing 20:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN20 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8
SP1: -
SP2: - - -
SP3:
SP4:

Relevant External Links for ZSCAN20 Gene

GeneLoc Exon Structure for
ZSCAN20
ECgene alternative splicing isoforms for
ZSCAN20

Expression for ZSCAN20 Gene

mRNA expression in normal human tissues for ZSCAN20 Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for ZSCAN20 Gene

SOURCE GeneReport for Unigene cluster for ZSCAN20 Gene Hs.442705

genes like me logo Genes that share expressions with ZSCAN20: view

Orthologs for ZSCAN20 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZSCAN20 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN20 36
  • 99.62 (n)
  • 99.23 (a)
ZSCAN20 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZSCAN20 36
  • 85.37 (n)
  • 82.39 (a)
ZSCAN20 37
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZSCAN20 36
  • 87.17 (n)
  • 85.28 (a)
ZSCAN20 37
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zscan20 36
  • 80.46 (n)
  • 77.27 (a)
Zscan20 16
Zscan20 37
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZSCAN20 37
  • 66 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ZSCAN20 37
  • 64 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zscan20 36
  • 80.2 (n)
  • 74.88 (a)
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 42 (a)
OneToMany
-- 37
  • 32 (a)
OneToMany
Species with no ortholog for ZSCAN20:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN20 Gene

ENSEMBL:
Gene Tree for ZSCAN20 (if available)
TreeFam:
Gene Tree for ZSCAN20 (if available)

Paralogs for ZSCAN20 Gene

Paralogs for ZSCAN20 Gene

Selected SIMAP similar genes for ZSCAN20 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for ZSCAN20 Gene

genes like me logo Genes that share paralogs with ZSCAN20: view

Variants for ZSCAN20 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN20 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1359330 -- 33,478,799(+) GTCTA(C/T)ACTGG intron-variant
rs1590431 -- 33,484,025(+) aaggc(A/G)attga intron-variant
rs1590432 -- 33,484,136(+) caatc(A/G)tgtca intron-variant
rs1590433 -- 33,484,490(+) gttac(A/G)ttaat intron-variant
rs2025498 -- 33,487,210(+) GCATT(G/T)TCACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZSCAN20 Gene

Variant ID Type Subtype PubMed ID
nsv834613 CNV Gain 17160897
nsv344 CNV Insertion 18451855

Relevant External Links for ZSCAN20 Gene

HapMap Linkage Disequilibrium report
ZSCAN20

Disorders for ZSCAN20 Gene

Relevant External Links for ZSCAN20

Genetic Association Database (GAD)
ZSCAN20
Human Genome Epidemiology (HuGE) Navigator
ZSCAN20
genes like me logo Genes that share disorders with ZSCAN20: view

No data available for UniProtKB/Swiss-Prot for ZSCAN20 Gene

Publications for ZSCAN20 Gene

  1. Multiple genes encoding zinc finger domains are expressed in human T cells. (PMID: 2288909) Thiesen H.-J. (New Biol. 1990) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  4. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PMID: 22505724) Udeshi N.D. … Carr S.A. (Mol. Cell Proteomics 2012) 3
  5. Bcl2-associated athanogene 3 interactome analysis reveals a new role in modulating proteasome activity. (PMID: 23824909) Chen Y. … Ge F. (Mol. Cell Proteomics 2013) 3

Products for ZSCAN20 Gene

Sources for ZSCAN20 Gene

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