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Aliases for ZSCAN2 Gene

Aliases for ZSCAN2 Gene

  • Zinc Finger And SCAN Domain Containing 2 2 3 5
  • Zinc Finger Protein 29 Homolog 3 4
  • Zinc Finger Protein 854 3 4
  • Zfp-29 3 4
  • ZNF854 3 4
  • ZFP29 3 4
  • Zinc Finger And SCAN Domain-Containing Protein 2 3
  • Zinc Finger Protein 29 2

External Ids for ZSCAN2 Gene

Previous HGNC Symbols for ZSCAN2 Gene

  • ZFP29

Previous GeneCards Identifiers for ZSCAN2 Gene

  • GC15P082945
  • GC15P085144
  • GC15P061230

Summaries for ZSCAN2 Gene

Entrez Gene Summary for ZSCAN2 Gene

  • The protein encoded by this gene contains several copies of zinc finger motif, which is commonly found in transcriptional regulatory proteins. Studies in mice show that this gene is expressed during embryonic development, and specifically in the testis in adult mice, suggesting that it may play a role in regulating genes in germ cells. Alternative splicing of this gene results in several transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

GeneCards Summary for ZSCAN2 Gene

ZSCAN2 (Zinc Finger And SCAN Domain Containing 2) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZNF665.

UniProtKB/Swiss-Prot for ZSCAN2 Gene

  • May be involved in transcriptional regulation during the post-meiotic stages of spermatogenesis.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN2 Gene

Genomics for ZSCAN2 Gene

Regulatory Elements for ZSCAN2 Gene

Enhancers for ZSCAN2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F084569 1.1 ENCODE 11.9 -30.1 -30124 2.5 PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 ZNF207 LINC00933 GOLGA6L4 WDR73 GOLGA6L5P ZSCAN2 NMB ZNF592 GOLGA6L3 RN7SL331P UBE2Q2P1
GH15F084142 1.1 Ensembl ENCODE 10.1 -457.9 -457892 0.6 ATF1 CBX3 SIN3A ZNF2 RAD21 RFX5 SCRT2 ZNF143 RCOR1 ZNF548 WDR73 GOLGA6L4 ENSG00000256278 GOLGA6L5P ZSCAN2 DNM1P41 GC15M084077
GH15F085353 1 Ensembl ENCODE 10.7 +753.5 753509 1.3 ZIC2 ZNF48 RARA ZKSCAN1 ZNF366 MAFK ZNF202 RFX1 CEBPB ATF2 WDR73 LOC101929479 ENSG00000256278 GOLGA6L5P ZSCAN2 UBE2Q2P1 ADAMTS7P4 LOC102724393 AKAP13 MIR7706
GH15F084638 0.7 ENCODE 13.2 +37.3 37254 0.4 CTCF MXI1 ARID4B MAX SIN3A RAD21 FOXK2 SMC3 ZNF600 ZNF687 ENSG00000256278 ZSCAN2 ZNF592 SEC11A ENSG00000275120 GC15M084641 PIR42481
GH15F084884 1.2 Ensembl ENCODE 4.6 +285.6 285643 5.7 ELF3 MLX ARID4B DMAP1 ZNF48 ZSCAN9 RAD21 RARA YY1 ETV6 NMB LINC00933 GOLGA6L4 GOLGA6L5P GOLGA6L3 ZNF592 ZSCAN2 GC15M084891 SLC28A1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZSCAN2 on UCSC Golden Path with GeneCards custom track

Promoters for ZSCAN2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001454594 314 2201 CREB3L1 MLX WRNIP1 ARID4B SIN3A YY1 ZNF143 FOS KLF13 SP3

Genomic Location for ZSCAN2 Gene

Chromosome:
15
Start:
84,600,986 bp from pter
End:
84,627,796 bp from pter
Size:
26,811 bases
Orientation:
Plus strand

Genomic View for ZSCAN2 Gene

Genes around ZSCAN2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN2 Gene

Proteins for ZSCAN2 Gene

  • Protein details for ZSCAN2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z7L9-ZSCA2_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 2
    Protein Accession:
    Q7Z7L9
    Secondary Accessions:
    • A6NG83
    • B2RMQ9
    • Q6ZQY9
    • Q9NWU4

    Protein attributes for ZSCAN2 Gene

    Size:
    614 amino acids
    Molecular mass:
    69547 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC87537.1; Type=Erroneous translation; Note=Aberrant splicing.; Evidence={ECO:0000305};

    Alternative splice isoforms for ZSCAN2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZSCAN2 Gene

Post-translational modifications for ZSCAN2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZSCAN2 Gene

Domains & Families for ZSCAN2 Gene

Gene Families for ZSCAN2 Gene

Suggested Antigen Peptide Sequences for ZSCAN2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q7Z7L9

UniProtKB/Swiss-Prot:

ZSCA2_HUMAN :
  • Contains 1 SCAN box domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 14 C2H2-type zinc fingers.
Domain:
  • Contains 1 SCAN box domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 14 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZSCAN2: view

Function for ZSCAN2 Gene

Molecular function for ZSCAN2 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation during the post-meiotic stages of spermatogenesis.

Gene Ontology (GO) - Molecular Function for ZSCAN2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA --
GO:0003676 nucleic acid binding IEA --
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IEA,IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN2: view
genes like me logo Genes that share phenotypes with ZSCAN2: view

Animal Models for ZSCAN2 Gene

MGI Knock Outs for ZSCAN2:

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ZSCAN2 Gene

Localization for ZSCAN2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZSCAN2 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZSCAN2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZSCAN2: view

Pathways & Interactions for ZSCAN2 Gene

SuperPathways for ZSCAN2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZSCAN2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA,IBA --
GO:0007275 multicellular organism development IEA --
GO:0007283 spermatogenesis IEA --
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with ZSCAN2: view

No data available for Pathways by source and SIGNOR curated interactions for ZSCAN2 Gene

Transcripts for ZSCAN2 Gene

Unigene Clusters for ZSCAN2 Gene

Zinc finger and SCAN domain containing 2:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN2 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c ^ 3a · 3b · 3c · 3d · 3e · 3f · 3g ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d
SP1: - - - - - - -
SP2: - - -
SP3: - -
SP4: - - - -
SP5: -
SP6: - - - - - -
SP7: - - - - -
SP8: - - -
SP9: - - - - - - - - - - - - -
SP10: - -

Relevant External Links for ZSCAN2 Gene

GeneLoc Exon Structure for
ZSCAN2
ECgene alternative splicing isoforms for
ZSCAN2

Expression for ZSCAN2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZSCAN2 Gene

Protein differential expression in normal tissues from HIPED for ZSCAN2 Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZSCAN2 Gene



Protein tissue co-expression partners for ZSCAN2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZSCAN2 Gene:

ZSCAN2

SOURCE GeneReport for Unigene cluster for ZSCAN2 Gene:

Hs.594023
genes like me logo Genes that share expression patterns with ZSCAN2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZSCAN2 Gene

Orthologs for ZSCAN2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZSCAN2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100610406 34
  • 99.31 (n)
ZSCAN2 35
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zscan2 34 16 35
  • 85.78 (n)
rat
(Rattus norvegicus)
Mammalia Zscan2 34
  • 85.62 (n)
dog
(Canis familiaris)
Mammalia ZSCAN2 34 35
  • 84.12 (n)
cow
(Bos Taurus)
Mammalia ZSCAN2 34 35
  • 83.6 (n)
oppossum
(Monodelphis domestica)
Mammalia ZSCAN2 35
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ZSCAN2 35
  • 67 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 35
  • 47 (a)
ManyToMany
-- 35
  • 46 (a)
ManyToMany
-- 35
  • 45 (a)
ManyToMany
-- 35
  • 45 (a)
ManyToMany
-- 35
  • 43 (a)
ManyToMany
-- 35
  • 41 (a)
ManyToMany
ZNF302 35
  • 41 (a)
ManyToMany
-- 35
  • 40 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 29 (a)
ManyToMany
Species where no ortholog for ZSCAN2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN2 Gene

ENSEMBL:
Gene Tree for ZSCAN2 (if available)
TreeFam:
Gene Tree for ZSCAN2 (if available)

Paralogs for ZSCAN2 Gene

(523) SIMAP similar genes for ZSCAN2 Gene using alignment to 9 proteins:

Pseudogenes.org Pseudogenes for ZSCAN2 Gene

genes like me logo Genes that share paralogs with ZSCAN2: view

Variants for ZSCAN2 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN2 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs193921069 Uncertain significance 84,621,450(+) CCTAC(A/C)AGTGC reference, missense
rs863223360 Benign 84,604,079(+) TGGCC(-/CT)GAGTC intron-variant, reference, frameshift-variant
rs10083683 -- 84,616,166(+) TGGGA(C/G)GCAGA intron-variant
rs10607025 -- 84,600,289(+) ATATA(-/TA)TATAC upstream-variant-2KB
rs10852053 -- 84,613,343(+) TGAGA(C/T)GGAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZSCAN2 Gene

Variant ID Type Subtype PubMed ID
esv2672879 CNV deletion 23128226
esv3569831 CNV gain 25503493
esv3637093 CNV gain 21293372
esv3637095 CNV gain 21293372
nsv1643 CNV insertion 18451855
nsv428310 CNV gain+loss 18775914

Variation tolerance for ZSCAN2 Gene

Residual Variation Intolerance Score: 4.72% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.15; 23.19% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZSCAN2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZSCAN2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZSCAN2 Gene

Disorders for ZSCAN2 Gene

Relevant External Links for ZSCAN2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZSCAN2

No disorders were found for ZSCAN2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZSCAN2 Gene

Publications for ZSCAN2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. A zinc finger protein-encoding gene expressed in the post-meiotic phase of spermatogenesis. (PMID: 1937051) Denny P. … Ashworth A. (Gene 1991) 2 3 64
  4. Biological insights from 108 schizophrenia-associated genetic loci. (PMID: 25056061) (Nature 2014) 3 64
  5. The functional interactome landscape of the human histone deacetylase family. (PMID: 23752268) Joshi P. … Cristea I.M. (Mol. Syst. Biol. 2013) 3 64

Products for ZSCAN2 Gene

Sources for ZSCAN2 Gene

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