Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZSCAN16-AS1 Gene

Subcategory (RNA class) for ZSCAN16-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZSCAN16-AS1 Gene

  • ZSCAN16 Antisense RNA 1 2 3 5

External Ids for ZSCAN16-AS1 Gene

Previous GeneCards Identifiers for ZSCAN16-AS1 Gene

  • GC06M028059

Summaries for ZSCAN16-AS1 Gene

GeneCards Summary for ZSCAN16-AS1 Gene

ZSCAN16-AS1 (ZSCAN16 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZSCAN16-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN16-AS1 Gene

Genomics for ZSCAN16-AS1 Gene

GeneHancer (GH) Regulatory Elements for ZSCAN16-AS1 Gene

Promoters and enhancers for ZSCAN16-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I028135 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 550.8 +0.1 118 3.6 ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZKSCAN8 ENSG00000261839 ZSCAN16-AS1 ZKSCAN3 ZKSCAN4 ZSCAN12 ZNF603P ZSCAN9 TRIM27 ZSCAN31
GH06I027388 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.3 +748.4 748415 1.8 CLOCK MLX ZFP64 DMAP1 IRF4 ZNF213 E2F8 ZNF416 ZNF143 ZNF263 ZNF391 GC06P027389 GC06M027388 ZKSCAN3 ZKSCAN8 ZNF204P PGBD1 ABT1 ZSCAN9 ZKSCAN4
GH06I028079 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10 +56.7 56650 3.1 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF165 LOC102724889 ZNF603P ZKSCAN8 ZKSCAN3 ZSCAN12 ZSCAN9 ZKSCAN4 PGBD1 OR2B8P
GH06I028747 Enhancer 1.5 Ensembl ENCODE dbSUPER 11.3 -610.4 -610370 1.1 ARNT SIN3A ZNF2 ZNF766 CBX5 ZNF213 E2F8 FOS SP3 REST GC06P028748 TRK-TTT7-1 ZSCAN12 TRIM27 ZKSCAN3 ZKSCAN8 ZNF311 ZNF602P ZSCAN23 ENSG00000261839
GH06I027176 Enhancer 1.6 FANTOM5 Ensembl ENCODE 9.8 +959.7 959703 3.2 HDGF PKNOX1 SMAD1 ARNT SIN3A ZNF2 YY1 ZNF213 E2F8 ZNF143 TRI-AAT5-2 BTN3A2 ZKSCAN8 BTN2A2 ABT1 BTN2A1 ZNF204P HMGN4 ZNF391 HIST1H2BK
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ZSCAN16-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ZSCAN16-AS1 Gene

Genomic Locations for ZSCAN16-AS1 Gene
chr6:28,121,795-28,137,316
(GRCh38/hg38)
Size:
15,522 bases
Orientation:
Minus strand
chr6:28,058,336-28,105,071
(GRCh37/hg19)

Genomic View for ZSCAN16-AS1 Gene

Genes around ZSCAN16-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN16-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN16-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN16-AS1 Gene

Proteins for ZSCAN16-AS1 Gene

Post-translational modifications for ZSCAN16-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZSCAN16-AS1 Gene

Domains & Families for ZSCAN16-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZSCAN16-AS1 Gene

Function for ZSCAN16-AS1 Gene

Phenotypes From GWAS Catalog for ZSCAN16-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZSCAN16-AS1 Gene

Localization for ZSCAN16-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZSCAN16-AS1 Gene

Pathways & Interactions for ZSCAN16-AS1 Gene

SuperPathways for ZSCAN16-AS1 Gene

No Data Available

Interacting Proteins for ZSCAN16-AS1 Gene

Gene Ontology (GO) - Biological Process for ZSCAN16-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZSCAN16-AS1 Gene

Drugs & Compounds for ZSCAN16-AS1 Gene

No Compound Related Data Available

Expression for ZSCAN16-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZSCAN16-AS1 Gene

genes like me logo Genes that share expression patterns with ZSCAN16-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZSCAN16-AS1 Gene

Orthologs for ZSCAN16-AS1 Gene

Evolution for ZSCAN16-AS1 Gene

ENSEMBL:
Gene Tree for ZSCAN16-AS1 (if available)
TreeFam:
Gene Tree for ZSCAN16-AS1 (if available)

No data available for Orthologs for ZSCAN16-AS1 Gene

Paralogs for ZSCAN16-AS1 Gene

No data available for Paralogs for ZSCAN16-AS1 Gene

Variants for ZSCAN16-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN16-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000183590 -- 28,128,381(-) TTACATTAC/TTAC intron_variant
rs1000345333 -- 28,137,080(-) G/T non_coding_transcript_variant
rs1000361029 -- 28,128,516(-) G/C intron_variant
rs1000681677 -- 28,138,830(-) G/C upstream_transcript_variant
rs1000753793 -- 28,130,900(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ZSCAN16-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv472348 CNV novel sequence insertion 20440878
nsv480860 CNV novel sequence insertion 20440878

Additional Variant Information for ZSCAN16-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZSCAN16-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZSCAN16-AS1 Gene

Disorders for ZSCAN16-AS1 Gene

Additional Disease Information for ZSCAN16-AS1

No disorders were found for ZSCAN16-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZSCAN16-AS1 Gene

Publications for ZSCAN16-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ZSCAN16-AS1 Gene

Sources for ZSCAN16-AS1 Gene

Content
Loading form....