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Aliases for ZSCAN16-AS1 Gene

Subcategory (RNA class) for ZSCAN16-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZSCAN16-AS1 Gene

  • ZSCAN16 Antisense RNA 1 2 3 5

External Ids for ZSCAN16-AS1 Gene

Previous GeneCards Identifiers for ZSCAN16-AS1 Gene

  • GC06M028059

Summaries for ZSCAN16-AS1 Gene

GeneCards Summary for ZSCAN16-AS1 Gene

ZSCAN16-AS1 (ZSCAN16 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ZSCAN16-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN16-AS1 Gene

Genomics for ZSCAN16-AS1 Gene

Regulatory Elements for ZSCAN16-AS1 Gene

Enhancers for ZSCAN16-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H028747 1.6 Ensembl ENCODE dbSUPER 11.3 -610.4 -610370 1 ARNT ZNF2 ZNF766 CBX5 FOS SP3 REST ZNF592 SSRP1 MIER3 ZKSCAN3 ZKSCAN8 ZSCAN12 TRIM27 ZNF311 ZNF602P ZSCAN23 ENSG00000261839 ZFP57 ZKSCAN4
GH06H027477 1.7 Ensembl ENCODE dbSUPER 9.8 +658.3 658316 2 PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF391 PGBD1 ABT1 ZSCAN12 ZKSCAN8 ZKSCAN4 ZKSCAN3 ZNF322 ZSCAN23 ZNF204P
GH06H027176 1.7 FANTOM5 Ensembl ENCODE 9.8 +959.7 959704 3 HDGF PKNOX1 ARNT SIN3A ZNF2 YY1 ZNF143 FOS SP3 SP5 ZKSCAN8 ABT1 BTN3A2 BTN2A2 BTN2A1 ZNF204P BTN2A3P HMGN4 ZNF391 HIST1H2BK
GH06H027494 1.4 Ensembl ENCODE 11.3 +641.7 641668 1 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 ZNF766 ZNF302 ZNF143 ZSCAN12 ZKSCAN8 ZKSCAN3 ZNF322 ZSCAN9 ZSCAN23 ZNF391 ZKSCAN4 ZNF204P PGBD1
GH06H027552 1.4 Ensembl ENCODE 11.3 +584.1 584109 2 HNRNPUL1 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 ZKSCAN8 ABT1 ZKSCAN3 ZSCAN12 ZKSCAN4 ZSCAN9 ZSCAN23 ZNF322 ZNF602P RNU6-471P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZSCAN16-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZSCAN16-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195197 516 2001 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A ZNF610 GLIS1

Genomic Location for ZSCAN16-AS1 Gene

Chromosome:
6
Start:
28,121,795 bp from pter
End:
28,137,316 bp from pter
Size:
15,522 bases
Orientation:
Minus strand

Genomic View for ZSCAN16-AS1 Gene

Genes around ZSCAN16-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN16-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN16-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN16-AS1 Gene

Proteins for ZSCAN16-AS1 Gene

Post-translational modifications for ZSCAN16-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZSCAN16-AS1 Gene

Domains & Families for ZSCAN16-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZSCAN16-AS1 Gene

Function for ZSCAN16-AS1 Gene

Phenotypes From GWAS Catalog for ZSCAN16-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZSCAN16-AS1 Gene

Localization for ZSCAN16-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ZSCAN16-AS1 Gene

Pathways & Interactions for ZSCAN16-AS1 Gene

SuperPathways for ZSCAN16-AS1 Gene

No Data Available

Interacting Proteins for ZSCAN16-AS1 Gene

Gene Ontology (GO) - Biological Process for ZSCAN16-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZSCAN16-AS1 Gene

Drugs & Compounds for ZSCAN16-AS1 Gene

No Compound Related Data Available

Transcripts for ZSCAN16-AS1 Gene

mRNA/cDNA for ZSCAN16-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN16-AS1 Gene

No ASD Table

Relevant External Links for ZSCAN16-AS1 Gene

GeneLoc Exon Structure for
ZSCAN16-AS1
ECgene alternative splicing isoforms for
ZSCAN16-AS1

Expression for ZSCAN16-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZSCAN16-AS1 Gene

genes like me logo Genes that share expression patterns with ZSCAN16-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZSCAN16-AS1 Gene

Orthologs for ZSCAN16-AS1 Gene

Evolution for ZSCAN16-AS1 Gene

ENSEMBL:
Gene Tree for ZSCAN16-AS1 (if available)
TreeFam:
Gene Tree for ZSCAN16-AS1 (if available)

No data available for Orthologs for ZSCAN16-AS1 Gene

Paralogs for ZSCAN16-AS1 Gene

No data available for Paralogs for ZSCAN16-AS1 Gene

Variants for ZSCAN16-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN16-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000183590 -- 28,128,381(+) GACAC(-/TTACA)TTACT intron-variant
rs1000345333 -- 28,137,080(+) CTGGG(G/T)ACCCG nc-transcript-variant
rs1000361029 -- 28,128,516(+) AGTAG(C/G)CTTGC intron-variant
rs1000681677 -- 28,138,830(+) CCACA(C/G)AGGGG upstream-variant-2KB
rs1000753793 -- 28,130,900(+) GGAGA(C/T)AGGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZSCAN16-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv472348 CNV novel sequence insertion 20440878
nsv480860 CNV novel sequence insertion 20440878

Relevant External Links for ZSCAN16-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZSCAN16-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZSCAN16-AS1 Gene

Disorders for ZSCAN16-AS1 Gene

Relevant External Links for ZSCAN16-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZSCAN16-AS1

No disorders were found for ZSCAN16-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZSCAN16-AS1 Gene

Publications for ZSCAN16-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for ZSCAN16-AS1 Gene

Sources for ZSCAN16-AS1 Gene

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