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Aliases for ZSCAN16-AS1 Gene

Subcategory (RNA class) for ZSCAN16-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZSCAN16-AS1 Gene

  • ZSCAN16 Antisense RNA 1 2 3 5

External Ids for ZSCAN16-AS1 Gene

Previous GeneCards Identifiers for ZSCAN16-AS1 Gene

  • GC06M028059

Summaries for ZSCAN16-AS1 Gene

GeneCards Summary for ZSCAN16-AS1 Gene

ZSCAN16-AS1 (ZSCAN16 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN16-AS1 Gene

Genomics for ZSCAN16-AS1 Gene

Regulatory Elements for ZSCAN16-AS1 Gene

Enhancers for ZSCAN16-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F027176 1.8 FANTOM5 Ensembl ENCODE 9.8 +959.6 959604 3.4 CREB3L1 FEZF1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 SSRP1 ZNF610 ZNF391 BTN3A2 ZNF204P ZKSCAN8 ZNF192P1 ABT1 ZNF322 HIST1H2BK ENSG00000271755 ENSG00000261353
GH06F027862 1.5 Ensembl ENCODE 9.8 +268.6 268649 12.7 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 ZKSCAN8 ZKSCAN3 ZSCAN9 GUSBP2 ZSCAN26 ZKSCAN4 ZSCAN23 ZNF391 ZNF603P PGBD1
GH06F027477 1.4 Ensembl ENCODE 9.8 +658.5 658515 3.2 PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF391 ABT1 PGBD1 ZSCAN26 ZNF603P ZKSCAN3 ENSG00000261353 ZKSCAN4 ZNF192P1 ZNF184
GH06F028079 1.2 ENCODE 10 +56.7 56651 3.1 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZNF603P ZKSCAN8 ZKSCAN3 OR2B8P ZNF311 PGBD1 ZSCAN26 ZNF192P1 ZSCAN9 ZSCAN23
GH06F027374 1 ENCODE 9.8 +762.1 762088 2.0 ATF1 PKNOX1 CREB3L1 ARID4B ETS1 ZNF143 SP3 YY2 REST ZNF623 ZKSCAN8 ZKSCAN3 ZNF391 ABT1 ZSCAN9 GUSBP2 ZKSCAN4 HMGN4 ZNF322 PGBD1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZSCAN16-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZSCAN16-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001214481 616 2201 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC

Genomic Location for ZSCAN16-AS1 Gene

Chromosome:
6
Start:
28,121,795 bp from pter
End:
28,137,316 bp from pter
Size:
15,522 bases
Orientation:
Minus strand

Genomic View for ZSCAN16-AS1 Gene

Genes around ZSCAN16-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN16-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN16-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN16-AS1 Gene

Proteins for ZSCAN16-AS1 Gene

Post-translational modifications for ZSCAN16-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZSCAN16-AS1 Gene

Domains & Families for ZSCAN16-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZSCAN16-AS1 Gene

Function for ZSCAN16-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZSCAN16-AS1 Gene

Localization for ZSCAN16-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZSCAN16-AS1 Gene

Pathways & Interactions for ZSCAN16-AS1 Gene

SuperPathways for ZSCAN16-AS1 Gene

No Data Available

Interacting Proteins for ZSCAN16-AS1 Gene

Gene Ontology (GO) - Biological Process for ZSCAN16-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZSCAN16-AS1 Gene

Transcripts for ZSCAN16-AS1 Gene

mRNA/cDNA for ZSCAN16-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN16-AS1 Gene

No ASD Table

Relevant External Links for ZSCAN16-AS1 Gene

GeneLoc Exon Structure for
ZSCAN16-AS1
ECgene alternative splicing isoforms for
ZSCAN16-AS1

Expression for ZSCAN16-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZSCAN16-AS1 Gene

genes like me logo Genes that share expression patterns with ZSCAN16-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZSCAN16-AS1 Gene

Orthologs for ZSCAN16-AS1 Gene

Evolution for ZSCAN16-AS1 Gene

ENSEMBL:
Gene Tree for ZSCAN16-AS1 (if available)
TreeFam:
Gene Tree for ZSCAN16-AS1 (if available)

No data available for Orthologs for ZSCAN16-AS1 Gene

Paralogs for ZSCAN16-AS1 Gene

No data available for Paralogs for ZSCAN16-AS1 Gene

Variants for ZSCAN16-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN16-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10536780 -- 28,123,651(+) CCCAG(-/CA)CACAC intron-variant, upstream-variant-2KB
rs10684909 -- 28,133,244(+) ACACT(-/GT/TG)ATCAG intron-variant
rs111455644 -- 28,127,716(+) ATCCC(C/G)CATCC intron-variant, downstream-variant-500B
rs111776898 -- 28,127,537(+) CTATC(A/G)TCATA intron-variant, utr-variant-3-prime
rs112001890 -- 28,126,913(+) ACCAC(A/G)AAGGA intron-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for ZSCAN16-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv480860 CNV novel sequence insertion 20440878
nsv472348 CNV novel sequence insertion 20440878

Relevant External Links for ZSCAN16-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZSCAN16-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZSCAN16-AS1 Gene

Disorders for ZSCAN16-AS1 Gene

Relevant External Links for ZSCAN16-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZSCAN16-AS1

No disorders were found for ZSCAN16-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZSCAN16-AS1 Gene

Publications for ZSCAN16-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ZSCAN16-AS1 Gene

Sources for ZSCAN16-AS1 Gene

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