Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZSCAN16 Gene

Aliases for ZSCAN16 Gene

  • Zinc Finger And SCAN Domain Containing 16 2 3
  • Zinc Finger Protein 392 2 3 4
  • Zinc Finger Protein 435 2 3 4
  • ZNF392 3 4
  • ZNF435 3 4
  • Zinc Finger And SCAN Domain-Containing Protein 16 3
  • DJ265C24.3 3

External Ids for ZSCAN16 Gene

Previous Symbols for ZSCAN16 Gene

  • ZNF392
  • ZNF435

Summaries for ZSCAN16 Gene

GeneCards Summary for ZSCAN16 Gene

ZSCAN16 (Zinc Finger And SCAN Domain Containing 16) is a Protein Coding gene. Diseases associated with ZSCAN16 include colorectal cancer. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity. An important paralog of this gene is ZNF396.

UniProtKB/Swiss-Prot for ZSCAN16 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN16 Gene

Genomics for ZSCAN16 Gene

Genomic Location for ZSCAN16 Gene

Start:
28,124,556 bp from pter
End:
28,130,082 bp from pter
Size:
5,527 bases
Orientation:
Plus strand

Genomic View for ZSCAN16 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZSCAN16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN16 Gene

Regulatory Elements for ZSCAN16 Gene

Proteins for ZSCAN16 Gene

  • Protein details for ZSCAN16 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H4T2-ZSC16_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 16
    Protein Accession:
    Q9H4T2
    Secondary Accessions:
    • Q9H6K2

    Protein attributes for ZSCAN16 Gene

    Size:
    348 amino acids
    Molecular mass:
    40792 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for ZSCAN16 Gene

neXtProt entry for ZSCAN16 Gene

Proteomics data for ZSCAN16 Gene at MOPED

Post-translational modifications for ZSCAN16 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZSCAN16 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZSCAN16 Gene

Domains for ZSCAN16 Gene

Gene Families for ZSCAN16 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Suggested Antigen Peptide Sequences for ZSCAN16 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H4T2

UniProtKB/Swiss-Prot:

ZSC16_HUMAN
Domain:
  • Contains 1 SCAN box domain.:
    • Q9H4T2
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q9H4T2
Similarity:
  • Contains 4 C2H2-type zinc fingers.:
    • Q9H4T2
genes like me logo Genes that share domains with ZSCAN16: view

Function for ZSCAN16 Gene

Molecular function for ZSCAN16 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZSCAN16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity IEA --
GO:0005515 protein binding IPI 16189514
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZSCAN16: view

miRNA for ZSCAN16 Gene

miRTarBase miRNAs that target ZSCAN16

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZSCAN16 Gene

Localization for ZSCAN16 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN16 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZSCAN16 Gene COMPARTMENTS Subcellular localization image for ZSCAN16 gene
Compartment Confidence
nucleus 4

Gene Ontology (GO) - Cellular Components for ZSCAN16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZSCAN16: view

Pathways for ZSCAN16 Gene

SuperPathways for ZSCAN16 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZSCAN16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZSCAN16: view

No data available for Pathways by source for ZSCAN16 Gene

Transcripts for ZSCAN16 Gene

mRNA/cDNA for ZSCAN16 Gene

Unigene Clusters for ZSCAN16 Gene

Zinc finger and SCAN domain containing 16:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN16 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c
SP1: - -
SP2:
SP3: -
SP4: -

Relevant External Links for ZSCAN16 Gene

GeneLoc Exon Structure for
ZSCAN16
ECgene alternative splicing isoforms for
ZSCAN16

Expression for ZSCAN16 Gene

mRNA expression in normal human tissues for ZSCAN16 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZSCAN16 Gene

SOURCE GeneReport for Unigene cluster for ZSCAN16 Gene Hs.656641

genes like me logo Genes that share expressions with ZSCAN16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZSCAN16 Gene

Orthologs for ZSCAN16 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN16 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN16 35
  • 99.43 (n)
  • 98.56 (a)
ZSCAN16 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZSCAN16 35
  • 89.18 (n)
  • 85.06 (a)
ZSCAN16 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZSCAN16 35
  • 84.1 (n)
  • 82.47 (a)
ZSCAN16 36
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZSCAN16 36
  • 66 (a)
OneToOne
Species with no ortholog for ZSCAN16:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN16 Gene

ENSEMBL:
Gene Tree for ZSCAN16 (if available)
TreeFam:
Gene Tree for ZSCAN16 (if available)

Paralogs for ZSCAN16 Gene

Selected SIMAP similar genes for ZSCAN16 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for ZSCAN16 Gene

genes like me logo Genes that share paralogs with ZSCAN16: view

Variants for ZSCAN16 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN16 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
VAR_035604 A colorectal cancer sample

Relevant External Links for ZSCAN16 Gene

HapMap Linkage Disequilibrium report
ZSCAN16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZSCAN16 Gene

Disorders for ZSCAN16 Gene

(1) MalaCards Diseases for ZSCAN16 Gene

Search for ZSCAN16 Gene in MalaCards »
genes like me logo Genes that share disorders with ZSCAN16: view

No data available for UniProtKB/Swiss-Prot for ZSCAN16 Gene

Publications for ZSCAN16 Gene

  1. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3
  5. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3

Products for ZSCAN16 Gene

Sources for ZSCAN16 Gene

Back to Top

Content