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Aliases for ZSCAN16 Gene

Aliases for ZSCAN16 Gene

  • Zinc Finger And SCAN Domain Containing 16 2 3 5
  • Zinc Finger Protein 392 2 3 4
  • Zinc Finger Protein 435 2 3 4
  • ZNF392 3 4
  • ZNF435 3 4
  • DJ265C24.3 3

External Ids for ZSCAN16 Gene

Previous HGNC Symbols for ZSCAN16 Gene

  • ZNF392
  • ZNF435

Previous GeneCards Identifiers for ZSCAN16 Gene

  • GC06P028201
  • GC06P028093
  • GC06P027900

Summaries for ZSCAN16 Gene

GeneCards Summary for ZSCAN16 Gene

ZSCAN16 (Zinc Finger And SCAN Domain Containing 16) is a Protein Coding gene. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZNF165.

UniProtKB/Swiss-Prot for ZSCAN16 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSCAN16 Gene

Genomics for ZSCAN16 Gene

Regulatory Elements for ZSCAN16 Gene

Enhancers for ZSCAN16 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around ZSCAN16 on UCSC Golden Path with GeneCards custom track

Promoters for ZSCAN16 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ZSCAN16 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZSCAN16 Gene

Chromosome:
6
Start:
28,124,556 bp from pter
End:
28,130,086 bp from pter
Size:
5,531 bases
Orientation:
Plus strand

Genomic View for ZSCAN16 Gene

Genes around ZSCAN16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSCAN16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSCAN16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSCAN16 Gene

Proteins for ZSCAN16 Gene

  • Protein details for ZSCAN16 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H4T2-ZSC16_HUMAN
    Recommended name:
    Zinc finger and SCAN domain-containing protein 16
    Protein Accession:
    Q9H4T2
    Secondary Accessions:
    • Q9H6K2

    Protein attributes for ZSCAN16 Gene

    Size:
    348 amino acids
    Molecular mass:
    40792 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for ZSCAN16 Gene

neXtProt entry for ZSCAN16 Gene

Proteomics data for ZSCAN16 Gene at MOPED

Post-translational modifications for ZSCAN16 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZSCAN16 Gene

No data available for DME Specific Peptides for ZSCAN16 Gene

Domains & Families for ZSCAN16 Gene

Gene Families for ZSCAN16 Gene

Suggested Antigen Peptide Sequences for ZSCAN16 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H4T2

UniProtKB/Swiss-Prot:

ZSC16_HUMAN :
  • Contains 1 SCAN box domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 4 C2H2-type zinc fingers.
Domain:
  • Contains 1 SCAN box domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 4 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZSCAN16: view

Function for ZSCAN16 Gene

Molecular function for ZSCAN16 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZSCAN16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with ZSCAN16: view
genes like me logo Genes that share phenotypes with ZSCAN16: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZSCAN16 Gene

Localization for ZSCAN16 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZSCAN16 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZSCAN16 Gene COMPARTMENTS Subcellular localization image for ZSCAN16 gene
Compartment Confidence
nucleus 5

No data available for Gene Ontology (GO) - Cellular Components for ZSCAN16 Gene

Pathways & Interactions for ZSCAN16 Gene

SuperPathways for ZSCAN16 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ZSCAN16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZSCAN16 Gene

Drugs & Compounds for ZSCAN16 Gene

No Compound Related Data Available

Transcripts for ZSCAN16 Gene

mRNA/cDNA for ZSCAN16 Gene

Unigene Clusters for ZSCAN16 Gene

Zinc finger and SCAN domain containing 16:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZSCAN16 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c
SP1: - -
SP2:
SP3: -
SP4: -

Relevant External Links for ZSCAN16 Gene

GeneLoc Exon Structure for
ZSCAN16
ECgene alternative splicing isoforms for
ZSCAN16

Expression for ZSCAN16 Gene

mRNA expression in normal human tissues for ZSCAN16 Gene

Protein differential expression in normal tissues from HIPED for ZSCAN16 Gene

This gene is overexpressed in Serum (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZSCAN16 Gene



SOURCE GeneReport for Unigene cluster for ZSCAN16 Gene Hs.656641

genes like me logo Genes that share expression patterns with ZSCAN16: view

Protein tissue co-expression partners for ZSCAN16 Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZSCAN16 Gene

Orthologs for ZSCAN16 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZSCAN16 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ZSCAN16 35
  • 89.18 (n)
  • 85.06 (a)
ZSCAN16 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZSCAN16 35
  • 84.1 (n)
  • 82.47 (a)
ZSCAN16 36
  • 82 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ZSCAN16 35
  • 99.43 (n)
  • 98.56 (a)
ZSCAN16 36
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZSCAN16 36
  • 66 (a)
OneToOne
Species with no ortholog for ZSCAN16:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZSCAN16 Gene

ENSEMBL:
Gene Tree for ZSCAN16 (if available)
TreeFam:
Gene Tree for ZSCAN16 (if available)

Paralogs for ZSCAN16 Gene

(355) SIMAP similar genes for ZSCAN16 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for ZSCAN16 Gene

genes like me logo Genes that share paralogs with ZSCAN16: view

Variants for ZSCAN16 Gene

Sequence variations from dbSNP and Humsavar for ZSCAN16 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
VAR_035604 A colorectal cancer sample

Variation tolerance for ZSCAN16 Gene

Residual Variation Intolerance Score: 84.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.38; 42.14% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for ZSCAN16 Gene

Disorders for ZSCAN16 Gene

Relevant External Links for ZSCAN16

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZSCAN16

No disorders were found for ZSCAN16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZSCAN16 Gene

Publications for ZSCAN16 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3

Products for ZSCAN16 Gene

Sources for ZSCAN16 Gene

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