ZRSR2 Gene
protein-coding GIFtS: 46
GCID: GC0XP015808
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zinc finger (CCCH type), RNA-binding motif and serine/arginine...(Previous names: U2(RNU2) small nuclear RNA auxiliary factor 1-like 2, U2...)
(Previous symbol: U2AF1L2)
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Aliases
for ZRSR2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Zinc Finger (CCCH Type), RNA-Binding Motif And Serine/Arginine Rich 21 2 | | Renal Carcinoma Antigen NY-REN-202 3 | | U2AF1-RS21 2 3 | | CCCH Type Zinc Finger, RNA-Binding Motif And Serine/Arginine Rich Protein 22 3 | | U2AF1L21 2 3 | | U2AF35-Related Protein2 3 | | URP1 2 3 | | U2 Small Nuclear RNA Auxiliary Factor 1-Like 21 | | U2(RNU2) Small Nuclear RNA Auxiliary Factor 1-Like 21 2 3 | | U2 Small Nuclear Ribonucleoprotein Auxiliary Factor 35 KDa Subunit-RelatedProtein 22 | | U2AF1RS22 3 5 | | U2 Small Nuclear Ribonucleoprotein Auxiliary Factor, Small Subunit 22 |
Export aliases for ZRSR2 gene to outside databasesPrevious GC identifers: GC0XP015719 GC0XP015720 GC0XP013562 |
Summaries
for ZRSR2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for ZRSR2:
This gene encodes an essential splicing factor. The encoded protein associates with the U2 auxiliary factorheterodimer, which is required for the recognition of a functional 3' splice site in pre-mRNA splicing, and may play arole in network interactions during spliceosome assembly. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: U2AFM_HUMAN, Q15696Function: Pre-mRNA-binding protein required for splicing of both U2- and U12-type introns. Selectively interacts withthe 3'-splice site of U2- and U12-type pre-mRNAs and promotes different steps in U2 and U12 intron splicing. Recruitedto U12 pre-mRNAs in an ATP-dependent manner and is required for assembly of the prespliceosome, a precursor to otherspliceosomal complexes. For U2-type introns, it is selectively and specifically required for the second step ofsplicing
Gene Wiki entry for ZRSR2
|
Genomic Views
for ZRSR2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000023.10 NC_018934.1 NT_167197.1
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ZRSR2 gene promoter:
Pbx1a Pax-2 Pax-2a S8 POU2F1 POU2F1a HFH-1 Cart-1 RSRFC4 En-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for ZRSR2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZRSR2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: Xp22.1 Ensembl cytogenetic band: Xp22.2 HGNC cytogenetic band: Xp22.1ZRSR2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome X GeneLoc Exon Structure GeneLoc location for GC0XP015808: view genomic region
(about GC identifiers)
Start:
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15,808,574 bp from pter |
End:
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15,841,383 bp from pter |
Size:
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32,810 bases |
Orientation:
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plus strand |
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Proteins
for ZRSR2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: U2AFM_HUMAN, Q15696 (See
protein sequence)Recommended Name: U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 Size: 482 amino acids; 58045 Da
Subunit: Component of the U11/U12 snRNPs that are part of the U12-type spliceosome. Interacts (via RS domain) withSRSF1 and SRSF2. Interacts with U2AF2/U2AF65
Subcellular location: Nucleus
Secondary accessions: Q14D69Explore the universe of human proteins at neXtProt for ZRSR2: NX_Q15696
Post-translational modifications:
Phosphorylated in the RS domain by SRPK11
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q15696
ZRSR2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_005080.1
ENSEMBL proteins: ENSP00000303015 ENSP00000369664
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005689 | U12-type spliceosomal complex |
IDA | 15146077 |
ZRSR2 for ontologies About GeneDecksing
ZRSR2 Antibody Products:
Assay Products for ZRSR2: |
Protein
Domains /
Families
for ZRSR2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ZRSR2 for domains About GeneDecksing
4 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q15696ProtoNet protein and cluster: Q15696 3 Blocks protein families: IPB000504 RNA-binding region RNP-1 (RNA recognition motif) IPB000571 Zn-finger IPB009145 U2 auxiliary factor small subunit signature
UniProtKB/Swiss-Prot: U2AFM_HUMAN, Q15696Similarity: Contains 2 C3H1-type zinc fingersSimilarity: Contains 1 RRM (RNA recognition motif) domain |
Function
for ZRSR2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: U2AFM_HUMAN, Q15696Function: Pre-mRNA-binding protein required for splicing of both U2- and U12-type introns. Selectively interacts withthe 3'-splice site of U2- and U12-type pre-mRNAs and promotes different steps in U2 and U12 intron splicing. Recruitedto U12 pre-mRNAs in an ATP-dependent manner and is required for assembly of the prespliceosome, a precursor to otherspliceosomal complexes. For U2-type introns, it is selectively and specifically required for the second step ofsplicing
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZRSR2
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZRSR2 |
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view): About this table
ZRSR2 for ontologies About GeneDecksing
|
Pathways & Interactions
for ZRSR2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZRSR2
STRING Interaction
Network Preview (showing 4 interactants - click image to see more details)
4 Interacting proteins for ZRSR2 (Q156963 ENSP000003030154) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 3 biological process terms (GO ID links to tree view): About this table
ZRSR2 for ontologies About GeneDecksing
|
Drugs & Compounds
for ZRSR2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ZRSR2
Search CenterWatch for drugs/clinical trials and news about ZRSR2 / U2AFM
|
Transcripts
for ZRSR2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for ZRSR2 gene: NM_005089.3 Unigene Cluster for ZRSR2: Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 Hs.171909 [show with all ESTs]Unigene Representative Sequence: AK3096733 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000307771(uc004cxg.4) ENST00000380308 ENST00000468028
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZRSR2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
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Additional cDNA sequence: AK309673.1 BC050451.1 BC065719.1 BC113454.1 BC113480.1 D49677.1 8 DOTS entries: DT.445527 DT.310078 DT.75168549 DT.40205815 DT.121298648 DT.121298649 DT.75114871 DT.91757898 24/42 AceView cDNA sequences (see all 42): BC050451 AA814970 AK090845 BE164570 T67521 BG985951 BU686668 BQ962839 NM_005089 D49677 BF223374 BM699163 CD000949 AW237119 BU682194 AW515964 BF238191 AW089584 AA845804 BM669824 BG754533 BE673508 BQ004958 AI634052
GeneLoc Exon Structure
|
Expression
for ZRSR2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ZRSR2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See ZRSR2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ZRSR2
SOURCE GeneReport for Unigene cluster: Hs.171909
UniProtKB/Swiss-Prot: U2AFM_HUMAN, Q15696Tissue specificity: Widely expressed
SABiosciences Custom PCR Arrays for ZRSR2
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ZRSR2
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZRSR2 |
Orthologs
for ZRSR2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for ZRSR2 gene from 7/22 species (see all 22) About this table
ENSEMBL Gene Tree for ZRSR2 (if available)
TreeFam Gene Tree for ZRSR2 (if available) |
Paralogs
for ZRSR2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for ZRSR2 gene
- U2AF12 ZRSR12 U2AF1L42
18/34 SIMAP similar genes for ZRSR2 using alignment to 3 protein entries: U2AFM_HUMAN (see all proteins)
(see all similar genes):ETFA ZRSR1 X-linked retinopathy protein COQ5 CATSPERD DUSP11
KIAA1651 SH2B3 TUBA1C HC6 LOC100996300 KIAA0101
NCKAP1L DKFZp313J1712 SNRPF TM4SF19 DCAF17 C4BPB
ZRSR2 for paralogs About GeneDecksing
|
Genomic Variants
for ZRSR2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr X pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for ZRSR2 (15808574 - 15841383 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for ZRSR2: --
Locus Specific Mutation Databases (LSDB): ZRSR2
| SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZRSR2 |
|
Disorders
/ Diseases
for ZRSR2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
ZRSR2 for disorders About GeneDecksing
OMIM gene information: 300028
OMIM disorders: --
3  diseases for ZRSR2: About MalaCardsrenal carcinoma carcinoma renal cell carcinoma
Human Genome Epidemiology (HuGE) Navigator: ZRSR2 (1 document)
Export disorders for ZRSR2 gene to outside databases
|
Publications
for ZRSR2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ZRSR2 gene, integrated from 9 sources (see all 17):
(articles sorted by number of sources associating them with ZRSR2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome. (PubMed id 15146077)1, 2, 3 Will C.L.... Luehrmann R. (2004)
- A protein related to splicing factor U2AF35 that interacts with U2AF65 and SR proteins in splicing of pre-mRNA. (PubMed id 9237760)1, 2, 3 Tronchere H....Fu X.D. (1997)
- Isolation and mapping of human homologues of an imprinted mouse gene U2af1-rs1. (PubMed id 8586425)1, 2, 3 Kitagawa K.... Mukai T. (1995)
- The U2AF35-related protein Urp contacts the 3' splice site to promote U12-type intron splicing and the second step of U2-type intron splicing. (PubMed id 21041408)1, 2 Shen H.... Green M.R. (2010)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Antigens recognized by autologous antibody in patients with renal- cell carcinoma. (PubMed id 10508479)1, 2 Scanlan M.J....Old L.J. (1999)
- Frequency and prognostic impact of mutations in SRSF2, U2AF1, and ZRSR2 in patients with myelodysplastic syndromes. (PubMed id 22389253)1 Thol F....Heuser M. (2012)
- System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (2011)
- Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
|
External Searches for ZRSR2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing ZRSR2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ZRSR2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ZRSR2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ZRSR2 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for ZRSR2 gene:
Search GeneIP for patents involving ZRSR2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ZRSR2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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