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Aliases for ZRANB2-AS1 Gene

Subcategory (RNA class) for ZRANB2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZRANB2-AS1 Gene

  • ZRANB2 Antisense RNA 1 2 3 5
  • ZRANB2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ZRANB2-AS1 Gene

Previous GeneCards Identifiers for ZRANB2-AS1 Gene

  • GC01P071513

Summaries for ZRANB2-AS1 Gene

GeneCards Summary for ZRANB2-AS1 Gene

ZRANB2-AS1 (ZRANB2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZRANB2-AS1 Gene

Genomics for ZRANB2-AS1 Gene

Regulatory Elements for ZRANB2-AS1 Gene

Enhancers for ZRANB2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F070674 1 ENCODE 11.2 -370.8 -370755 1.7 PKNOX1 ATF1 ARNT CBX5 GATA2 NCOA1 MBD2 SMARCA4 PBX2 NBN PTGER3 ZRANB2-AS1 MIR186 ZRANB2 CASP3P1 LINC01788
GH01F071046 0.9 ENCODE 0.8 +0.8 776 1.9 TBP HDAC1 CREB3L1 NFRKB KLF13 EGR2 SP3 SMAD5 GTF2B POLR2H SRSF11 PTGER3 ZRANB2-AS1
GH01F071044 0.7 ENCODE 0.8 -1.2 -1183 0.9 TBP PKNOX1 ATF1 ETV1 JUN UBTF POLR2A CREM NR4A1 ZNF407 ZRANB2-AS1 GC01M071006
GH01F071014 0.4 FANTOM5 0.3 -32.0 -32005 0.3 FOXP2 MIR186 ZRANB2 GC01M071006 ZRANB2-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZRANB2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZRANB2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000538886 -305 1200 BCOR TBP RNF2 ETV1 NR4A1 ZNF407 UBTF ZSCAN29
ENSR00001746366 1294 800 TBP CREB3L1 NFRKB KLF13 EGR2 SP3 SMAD5 GTF2B POLR2H CBX8

Genomic Location for ZRANB2-AS1 Gene

Chromosome:
1
Start:
71,046,506 bp from pter
End:
71,067,184 bp from pter
Size:
20,679 bases
Orientation:
Plus strand

Genomic View for ZRANB2-AS1 Gene

Genes around ZRANB2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZRANB2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZRANB2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZRANB2-AS1 Gene

Proteins for ZRANB2-AS1 Gene

Post-translational modifications for ZRANB2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZRANB2-AS1 Gene

Domains & Families for ZRANB2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZRANB2-AS1 Gene

Function for ZRANB2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZRANB2-AS1 Gene

Localization for ZRANB2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZRANB2-AS1 Gene

Pathways & Interactions for ZRANB2-AS1 Gene

SuperPathways for ZRANB2-AS1 Gene

No Data Available

Interacting Proteins for ZRANB2-AS1 Gene

Gene Ontology (GO) - Biological Process for ZRANB2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZRANB2-AS1 Gene

Transcripts for ZRANB2-AS1 Gene

mRNA/cDNA for ZRANB2-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZRANB2-AS1 Gene

ZRANB2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZRANB2-AS1 Gene

No ASD Table

Relevant External Links for ZRANB2-AS1 Gene

GeneLoc Exon Structure for
ZRANB2-AS1
ECgene alternative splicing isoforms for
ZRANB2-AS1

Expression for ZRANB2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZRANB2-AS1 Gene

SOURCE GeneReport for Unigene cluster for ZRANB2-AS1 Gene:

Hs.720513
genes like me logo Genes that share expression patterns with ZRANB2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZRANB2-AS1 Gene

Orthologs for ZRANB2-AS1 Gene

Evolution for ZRANB2-AS1 Gene

ENSEMBL:
Gene Tree for ZRANB2-AS1 (if available)
TreeFam:
Gene Tree for ZRANB2-AS1 (if available)

No data available for Orthologs for ZRANB2-AS1 Gene

Paralogs for ZRANB2-AS1 Gene

No data available for Paralogs for ZRANB2-AS1 Gene

Variants for ZRANB2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZRANB2-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1005747 -- 71,045,832(+) ATGGC(A/G)AAGGG intron-variant, upstream-variant-2KB
rs1005748 -- 71,045,835(+) GCAAA(A/G)GGCTG intron-variant, upstream-variant-2KB
rs1005749 -- 71,045,915(+) GCAGT(C/G)TTTCA intron-variant, upstream-variant-2KB
rs10889907 -- 71,059,070(+) GGTAG(G/T)GTGAG intron-variant
rs111230875 -- 71,052,605(+) GAGAA(A/C)TAAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZRANB2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv546472 CNV gain 21841781
nsv945995 CNV duplication 23825009

Relevant External Links for ZRANB2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZRANB2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZRANB2-AS1 Gene

Disorders for ZRANB2-AS1 Gene

Relevant External Links for ZRANB2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZRANB2-AS1

No disorders were found for ZRANB2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZRANB2-AS1 Gene

Publications for ZRANB2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ZRANB2-AS1 Gene

Sources for ZRANB2-AS1 Gene

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