ZRANB1 Gene
protein-coding GIFtS: 46
GCID: GC10P126620
|
|
zinc finger, RAN-binding domain containing 1
| |
Aliases
for ZRANB1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Zinc Finger, RAN-Binding Domain Containing 11 2 | | TRAF-Binding Protein Domain2 | | TRABID1 2 3 5 | | Ubiquitin Thioesterase ZRANB12 | | Zinc Finger Ran-Binding Domain-Containing Protein 12 3 | | EC 3.4.19.123 | | HTrabid1 | | EC 3.1.28 | | TRAF-Binding Domain-Containing Protein2 3 | | |
Export aliases for ZRANB1 gene to outside databasesPrevious GC identifers: GC10P126671 GC10P126205 GC10P120317 |
Summaries
for ZRANB1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: ZRAN1_HUMAN, Q9UGI0Function: Specifically hydrolyzes 'Lys-29'-linked and 'Lys-33'-linked diubiquitin. Also cleaves 'Lys-63'-linked chains,but with 40-fold less efficiency compared to 'Lys-29'-linked ones. Positive regulator of the Wnt signaling pathwaythat deubiquitinates APC protein, a negative regulator of Wnt-mediated transcription. Plays a role in the regulationof cell morphology and cytoskeletal organization. Required in the stress fiber dynamics and cell migration. May alsomodulate TNF-alpha signaling
|
Genomic Views
for ZRANB1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000010.10 NC_018921.1 NT_030059.13
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ZRANB1 gene promoter:
AREB6 S8 Lmo2 AP-4 CUTL1 MRF-2 E4BP4 Evi-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for ZRANB1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZRANB1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 10q26.13 Ensembl cytogenetic band: 10q26.13 HGNC cytogenetic band: 10q26.12ZRANB1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 10 GeneLoc Exon Structure GeneLoc location for GC10P126620: view genomic region
(about GC identifiers)
Start:
|
126,630,692 bp from pter |
End:
|
126,676,758 bp from pter |
Size:
|
46,067 bases |
Orientation:
|
plus strand |
|
Proteins
for ZRANB1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: ZRAN1_HUMAN, Q9UGI0 (See
protein sequence)Recommended Name: Ubiquitin thioesterase ZRANB1 Size: 708 amino acids; 80967 Da
Subunit: Interacts with APC and TRAF6
Subcellular location: Cytoplasm. Nucleus. Note=Enriched in punctate localization in the cytoplasm
Sequence caution: Sequence=BAG64010.1; Type=Erroneous initiation;
1 PDB 3D structure from  and Proteopedia  for ZRANB1:3ZRH (3D)
Secondary accessions: B4DZ98 D3DRF4 Q5SQP6 Q69YK3Explore the universe of human proteins at neXtProt for ZRANB1: NX_Q9UGI0
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9UGI0
4/15 DME Specific Peptides for ZRANB1 (Q9UGI0) (see all 15)
ZRANB1 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_060050.2
ENSEMBL proteins: ENSP00000352676
Human Recombinant Protein Products for ZRANB1:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table
ZRANB1 for ontologies About GeneDecksing
ZRANB1 Antibody Products:
Assay Products for ZRANB1: |
Protein
Domains /
Families
for ZRANB1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ZRANB1 for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q9UGI0ProtoNet protein and cluster: Q9UGI0 2 Blocks protein families: IPB001876 Zn-finger IPB003323 OTU-like cysteine protease
UniProtKB/Swiss-Prot: ZRAN1_HUMAN, Q9UGI0Domain: The OTU domain mediates the deubiquitinating activityDomain: The RanBP2-type zinc fingers mediate the specific interaction with 'Lys-63'-linked ubiquitinDomain: The second ankyrin repeat ANK 2 is termed AnkUBD, it interacts with ubiquitin hydrophobic patch and contributesto linkage specificityDomain: The RanBP2-type zinc fingers, also called NZFs, may provide additional ubiquitin-binding sites when hydrolyzinglong 'Lys-63'-linked chainsSimilarity: Belongs to the peptidase C64 familySimilarity: Contains 2 ANK repeatsSimilarity: Contains 1 OTU domainSimilarity: Contains 3 RanBP2-type zinc fingers |
Function
for ZRANB1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: ZRAN1_HUMAN, Q9UGI0Function: Specifically hydrolyzes 'Lys-29'-linked and 'Lys-33'-linked diubiquitin. Also cleaves 'Lys-63'-linked chains,but with 40-fold less efficiency compared to 'Lys-29'-linked ones. Positive regulator of the Wnt signaling pathwaythat deubiquitinates APC protein, a negative regulator of Wnt-mediated transcription. Plays a role in the regulationof cell morphology and cytoskeletal organization. Required in the stress fiber dynamics and cell migration. May alsomodulate TNF-alpha signalingCatalytic activity: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by theC-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal) Enzyme Numbers (IUBMB): EC 3.1.22 EC 3.4.19.121
Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view): About this table
ZRANB1 for ontologies About GeneDecksing
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ZRANB1 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZRANB1
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: ZRANB1 (NM_017580) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ZRANB1 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZRANB1 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZRANB1 |
|
Pathways & Interactions
for ZRANB1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ZRANB1
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/29 Interacting proteins for ZRANB1 (Q9UGI02, 3 ENSP000003526764) via UniProtKB, MINT, STRING, and/or I2D (see all 29)About this table
Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7): About this table
ZRANB1 for ontologies About GeneDecksing
|
Drugs & Compounds
for ZRANB1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ZRANB1
Search CenterWatch for drugs/clinical trials and news about ZRANB1 / ZRAN1
|
Transcripts
for ZRANB1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for ZRANB1 gene: NM_017580.2 Unigene Cluster for ZRANB1: Zinc finger, RAN-binding domain containing 1 Hs.595158 [show with all ESTs]Unigene Representative Sequence: NM_0175802 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000359653(uc010qug.2 uc001lic.3) ENST00000471421
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ZRANB1 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZRANB1
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: ZRANB1 (NM_017580) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ZRANB1 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZRANB1 |
Additional cDNA sequence: AJ252060.1 AK302810.1 AK307386.1 AL832925.1 12 DOTS entries: DT.455998 DT.449458 DT.100784115 DT.101975491 DT.96085296 DT.121277001 DT.91724439 DT.95269973 DT.91724422 DT.92061884 DT.92417554 DT.97797629 24/227 AceView cDNA sequences (see all 227): AI984423 AA602708 CF455633 BU167699 CA413606 BM697868 F01421 AW468776 BQ898370 AW084989 Z45207 AA689564 BQ215969 BE551292 BE670363 AA694301 Z40934 CB216838 BM716596 AW276231 AA902898 BF002491 BM984244 BG219266
GeneLoc Exon Structure
|
Expression
for ZRANB1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ZRANB1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See ZRANB1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ZRANB1
SOURCE GeneReport for Unigene cluster: Hs.595158
UniProtKB/Swiss-Prot: ZRAN1_HUMAN, Q9UGI0Tissue specificity: Widely expressed
SABiosciences Custom PCR Arrays for ZRANB1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ZRANB1
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ZRANB1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZRANB1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZRANB1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZRANB1 |
Orthologs
for ZRANB1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for ZRANB1 gene from 6/17 species (see all 17) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
mouse
(Mus musculus) |
Mammalia |
Zranb11 , 5 |
zinc finger, RAN-binding domain containing 11, 5 |
93.31(n)1
99.29(a)1 |
|
7 (76.32 cM)5
3602161 NM_207302.11 NP_997185.11
1329311425 |
chicken
(Gallus gallus) |
Aves |
ZRANB11 |
zinc finger, RAN-binding domain containing 1 |
85.83(n)
96.89(a) |
|
423953 XM_421816.3 XP_421816.2 |
lizard
(Anolis carolinensis) |
Reptilia |
ZRANB16 |
-- |
96(a) |
1 ↔ 1 |
3(62276525-62304559) |
African clawed frog
(Xenopus laevis) |
Amphibia |
Xl.98662 |
Xenopus laevis transcribed sequence with moderate similarity more |
78.2(n) |
|
BU904278.1 |
zebrafish
(Danio rerio) |
Actinopterygii |
Dr.145482 |
Transcribed sequence with moderate similarity to protein more |
74.13(n) |
|
BI673760.1 |
fruit fly
(Drosophila melanogaster) |
Insecta |
trbd1 |
trabid |
50.57(n)
49.38(a) |
|
41179 NM_141674.2 NP_649931.1 |
ENSEMBL Gene Tree for ZRANB1 (if available)
TreeFam Gene Tree for ZRANB1 (if available) |
Paralogs
for ZRANB1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for ZRANB1 gene
- TNFAIP32 OTUD7B2 OTUD7A2
ZRANB1 for paralogs About GeneDecksing
|
Genomic Variants
for ZRANB1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 10 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for ZRANB1 (126630692 - 126676758 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for ZRANB1: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZRANB1 |
|
Disorders
/ Diseases
for ZRANB1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
 ZRANB1 for disorders About MalaCards
ZRANB1 for disorders About GeneDecksing
OMIM gene information: 611749
OMIM disorders: --
Export disorders for ZRANB1 gene to outside databases
|
Publications
for ZRANB1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ZRANB1 gene, integrated from 9 sources (see all 15):
(articles sorted by number of sources associating them with ZRANB1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Isolation and characterization of two novel A20-like proteins. (PubMed id 11463333)1, 2, 3, 9 Evans P.C....Kilshaw P.J. (2001)
- An ankyrin-repeat ubiquitin-binding domain determines TRABID's specificity for atypical ubiquitin chains. (PubMed id 22157957)1, 2 Licchesi J.D....Komander D. (2012)
- Trabid, a new positive regulator of Wnt-induced transcription with preference for binding and cleaving K63-linked ubiquitin chains. (PubMed id 18281465)1, 2 Tran H.... Bienz M. (2008)
- Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
- Identification and characterization of a set of conserved and new regulators of cytoskeletal organisation, cell morphology and migration. (PubMed id 21834987)2 Bai S.W.... Ridley A.J. (2011)
- Ubiquitin ligase substrate identification through qua ntitative proteomics at both the protein and peptide levels. (PubMed id 21987572)1 Lee K.A....Doedens J.R. (2011)
- Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
- Lys11-linked ubiquitin chains adopt compact conformat ions and are preferentially hydrolyzed by the deubiquitinase Cezanne. (PubMed id 20622874)1 Bremm A....Komander D. (2010)
- Molecular discrimination of structurally equivalent Lys 63-linked and linear polyubiquitin chains. (PubMed id 19373254)1 Komander D....Barford D. (2009)
- Defining the human deubiquitinating enzyme interactio n landscape. (PubMed id 19615732)1 Sowa M.E....Harper J.W. (2009)
|
External Searches for ZRANB1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing ZRANB1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ZRANB1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ZRANB1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ZRANB1 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for ZRANB1 gene:
Search GeneIP for patents involving ZRANB1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ZRANB1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
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| |
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| |
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 | | | ZRANB1 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZRANB1 |
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