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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZP4 Gene

protein-coding   GIFtS: 50
GCID: GC01M238045

zona pellucida glycoprotein 4

 Explore 6 diseases affiliated with
ZP4 via our new
 Human Malady Compendium 
Biological research products
for ZP4
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Zona Pellucida Glycoprotein 41 2 3     ZBP2
ZPB1 2 3 5     ZP12
Zona Pellucida Protein B2 3     Zona Pellucida B Protein2
Zp-42 3     Zona Pellucida Sperm-Binding Protein 42

External Ids:    HGNC: 157701   Entrez Gene: 578292   Ensembl: ENSG000001169967   OMIM: 6135145   UniProtKB: Q128363   

Export aliases for ZP4 gene to outside databases

Previous GC identifers: GC01M236178 GC01M233499 GC01M234342 GC01M235086 GC01M234371 GC01M236112 GC01M208497


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ZP4:
The zona pellucida is an extracellular matrix that surrounds the oocyte and early embryo. It is composed primarily of
three or four glycoproteins with various functions during fertilization and preimplantation development. The nascent
protein contains a N-terminal signal peptide sequence, a conserved ZP domain, a consensus furin cleavage site, and a
C-terminal transmembrane domain. It is hypothesized that furin cleavage results in release of the mature protein from
the plasma membrane for subsequent incorporation into the zona pellucida matrix. However, the requirement for furin
cleavage in this process remains controversial based on mouse studies. Previously, this gene has been referred to as
ZP1 or ZPB and thought to have similar functions as mouse Zp1. However, a human gene with higher similarity and
chromosomal synteny to mouse Zp1 has been assigned the symbol ZP1 and this gene has been assigned the symbol ZP4.
(provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: ZP4_HUMAN, Q12836
Function: The mammalian zona pellucida, which mediates species-specific sperm binding, induction of the acrosome
reaction and prevents post-fertilization polyspermy, is composed of three to four glycoproteins, ZP1, ZP2, ZP3, and
ZP4. ZP4 may act as a sperm receptor

Gene Wiki entry for ZP4


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_167186.1  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZP4 gene promoter:
         c-Fos   AP-1   NRSF form 1   HTF   FOXD1   NRSF form 2   LCR-F1   CREB   Zic1   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZP4 promoter sequence
   Search SABiosciences Chromatin IP Primers for ZP4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZP4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q43   Ensembl cytogenetic band:  1q43   HGNC cytogenetic band: 1q43

ZP4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZP4 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M238045:  view genomic region     (about GC identifiers)

Start:
238,041,164 bp from pter      End:
238,054,222 bp from pter
Size:
13,059 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ZP4_HUMAN, Q12836 (See protein sequence)
Recommended Name: Zona pellucida sperm-binding protein 4 precursor  
Size: 540 amino acids; 59400 Da
Subcellular location: Processed zona pellucida sperm-binding protein 4: Secreted, extracellular space, extracellular
matrix
Subcellular location: Cell membrane; Single-pass type I membrane protein
Secondary accessions: B2RAE1

Explore the universe of human proteins at neXtProt for ZP4: NX_Q12836

Post-translational modifications:

  • Proteolytically cleaved before the transmembrane segment to yield the secreted ectodomain incorporated in the zona
  • pellucida1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q12836

  • ZP4 Protein expression data from MOPED and PaxDb:    About this image 
    ZP4 Protein Expression
    REFSEQ proteins: NP_067009.1  
    ENSEMBL proteins: 
     ENSP00000355529  

    Human Recombinant Protein Products for ZP4: 
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    Uscn Proteins for ZP4

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005578proteinaceous extracellular matrix IEA--
    GO:0005622intracellular ----
    GO:0005886plasma membrane IEA--
    GO:0016021integral to membrane IEA--

    ZP4 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ZP4 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR017977 ZP_dom_CS
     IPR000519 P_trefoil
     IPR001507 ZP_dom
     IPR017957 P_trefoil_CS

    Graphical View of Domain Structure for InterPro Entry Q12836

    ProtoNet protein and cluster: Q12836

    2 Blocks protein families:
    IPB000519 P-type trefoil domain
    IPB001507 Endoglin/CD105 antigen


    UniProtKB/Swiss-Prot: ZP4_HUMAN, Q12836
    Domain: The ZP domain is involved in the polymerization of the ZP proteins to form the zona pellucida
    Similarity: Belongs to the ZP domain family. ZPB subfamily
    Similarity: Contains 1 P-type (trefoil) domain
    Similarity: Contains 1 ZP domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZP4_HUMAN, Q12836
    Function: The mammalian zona pellucida, which mediates species-specific sperm binding, induction of the acrosome
    reaction and prevents post-fertilization polyspermy, is composed of three to four glycoproteins, ZP1, ZP2, ZP3, and
    ZP4. ZP4 may act as a sperm receptor

         Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004871signal transducer activity IMP18667750
    GO:0004872receptor activity ----
    GO:0032190acrosin binding IPI15950651
         
    ZP4 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for ZP4:
     Decreased viability with pacli 

    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZP4

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for ZP4 (Q128363 ENSP000003555294) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    FURINP099583, ENSP000002681714I2D: score=1 STRING: ENSP00000268171
    About this table

    Gene Ontology (GO): 5/9 biological process terms (GO ID links to tree view) (see all 9):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0002922positive regulation of humoral immune response IDA19004505
    GO:0010737protein kinase A signaling cascade IDA18667750
    GO:0035556intracellular signal transduction IMP18667750
    GO:0042102positive regulation of T cell proliferation IDA19004505
    GO:0045860positive regulation of protein kinase activity IDA18667750

    ZP4 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZP4
    Search CenterWatch for drugs/clinical trials and news about ZP4 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZP4 gene: 
    NM_021186.3  

    Unigene Cluster for ZP4:

    Zona pellucida glycoprotein 4
    Hs.136241  [show with all ESTs]
    Unigene Representative Sequence: NM_021186
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000366570(uc001hym.3)

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    hsa-miR-607 hsa-miR-29b-1*
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    Inhib. RNA
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    Additional cDNA sequence: 

    AK314151.1 BC069521.1 

    1 DOTS entry:

    DT.91924499 

    6 AceView cDNA sequences:

    NM_021186 BC069521 CB126151 AA169152 CB126325 AA169775 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZP4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: ATTCTACTCC
    ZP4 Expression
    About this image

    ZP4 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    CD31, CD144 positive cells (Two-step protocol fo...)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See ZP4 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZP4

    SOURCE GeneReport for Unigene cluster: Hs.136241

    UniProtKB/Swiss-Prot: ZP4_HUMAN, Q12836
    Tissue specificity: Oocytes

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    In Situ
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZP4

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for ZP4 gene from 2/7 species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves ZP41 zona pellucida glycoprotein 4 63.69(n)
    53.75(a)
      395692  NM_204879.1  NP_990210.1 
    zebrafish
    (Danio rerio)
    Actinopterygii BM037412.12   -- 71.36(n)    BM037412.1 


    ENSEMBL Gene Tree for ZP4 (if available)
    TreeFam Gene Tree for ZP4 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZP4 gene
    ZP12  ZP22  
    2 SIMAP similar genes for ZP4 using alignment to 1 protein entry:     ZP4_HUMAN:
    ZP1    ZP2

    ZP4 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/428 NCBI SNPs in ZP4 are shown (see all 428    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1839297921,2
    --238040679(+) CCCAAA/CGTGCT 2 -- int1 ds50010--------
    rs1427458281,2
    --238040707(+) CCACCC/GCATCC 2 -- ds5001 int10--------
    rs1882125961,2
    --238040719(+) GCCAGG/TTACAA 2 -- ds5001 int10--------
    rs576027911,2
    C,F--238040727(+) CAACTT/GATTTT 2 -- int1 ds50016Minor allele frequency- G:0.32WA NA CSA EA 364
    rs1819900351,2
    --238040746(+) TCATCA/GGAGCC 2 -- int1 ds50010--------
    rs1150890821,2
    --238040880(+) GGAGGC/TATCGG 2 -- ds5001 int10--------
    rs28936071,2
    C,F,A,H--238040922(-) AAAGAG/CACTGT 2 -- int1 ds500132Minor allele frequency- C:0.18NS EA NA WA CSA 2956
    rs1855518871,2
    --238040993(+) GGCACA/TGCTAT 2 -- ds5001 int10--------
    rs1900305611,2
    --238041063(+) AAACAA/GTAGCT 2 -- ds5001 int10--------
    rs1816160441,2
    --238041073(+) TGACAG/TTTAGC 2 -- ds5001 int10--------

    HapMap Linkage Disequilibrium report for ZP4 (238041164 - 238054222 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 3 variations for ZP4
         3 CNVs: 8350 2353 3336

    SABiosciences Cancer Mutation PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZP4
    DNA2.0 Custom Variant and Variant Library Synthesis for ZP4

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ZP4 for disorders           About GeneDecksing

    OMIM gene information: 613514    OMIM disorders: --

    6 diseases for ZP4:    About MalaCards
    oophoritis    fatty liver disease    liver disease    glaucoma
    multiple sclerosis    infertility

    2 diseases from the University of Copenhagen DISEASES database for ZP4:
    Oophoritis     Infertility
    Human Genome Epidemiology (HuGE) Navigator: ZP4 (3 documents)

    Export disorders for ZP4 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZP4 gene, integrated from 9 sources (see all 42):
    (articles sorted by number of sources associating them with ZP4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Cloning and characterization of zona pellucida genes and cDNAs from a variety of mammalian species: the ZPA, ZPB and ZPC gene families. (PubMed id 7841460)1, 2, 3, 9 Harris J.D....Sacco A.G. (1994)
    2. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (2006)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. DNA vaccine encoding chimeric protein encompassing epitopes of human ZP3 and ZP4: immunogenicity and characterization of antibodies. (PubMed id 19004505)1, 9 Choudhury S....Gupta S.K. (2009)
    5. Effects of native human zona pellucida glycoproteins 3 and 4 on acrosome reaction and zona pellucida binding of human spermatozoa. (PubMed id 18667750)1, 9 Chiu P.C....Yeung W.S. (2008)
    6. Immunohistochemical localization of zona pellucida proteins ZPA, ZPB and ZPC in human, cynomolgus monkey and mouse ovaries. (PubMed id 11291774)1, 9 Eberspaecher U....Donner P. (2001)
    7. Biological effects of recombinant human zona pellucida proteins on sperm function. (PubMed id 16407501)1, 9 Caballero-Campo P....Gerton G.L. (2006)
    8. Binding of recombinant human proacrosin/acrosin to zona pellucida (ZP) glycoproteins. I. Studies with recombinant human ZPA, ZPB, and ZPC. (PubMed id 15950651)1, 9 Furlong L.I....Vazquez-Levin M.H. (2005)
    9. Four zona pellucida glycoproteins are expressed in the human. (PubMed id 15142998)1, 9 Lefievre L....Barratt C.L. (2004)
    10. Proteolytic processing of human zona pellucida proteins. (PubMed id 11804956)1, 9 Kiefer S.M. and Saling P. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 57829 HGNC: 15770 AceView: ZP4 Ensembl:ENSG00000116996 euGenes: HUgn57829
    ECgene: ZP4 H-InvDB: ZP4

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZP4 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ZP4 gene:
    Search GeneIP for patents involving ZP4

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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