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Aliases for ZNRF3-AS1 Gene

Subcategory (RNA class) for ZNRF3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZNRF3-AS1 Gene

  • ZNRF3 Antisense RNA 1 2 3 5
  • ZNRF3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTA-747E2.11 3

External Ids for ZNRF3-AS1 Gene

Previous GeneCards Identifiers for ZNRF3-AS1 Gene

  • GC00U933744
  • GC22M029421

Summaries for ZNRF3-AS1 Gene

GeneCards Summary for ZNRF3-AS1 Gene

ZNRF3-AS1 (ZNRF3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNRF3-AS1 Gene

Genomics for ZNRF3-AS1 Gene

Regulatory Elements for ZNRF3-AS1 Gene

Enhancers for ZNRF3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F029028 1.7 FANTOM5 Ensembl ENCODE 8.1 +0.2 246 4.8 MLX ARID4B SIN3A YY1 FOS ZNF263 SP3 SP5 REST KAT8 C22orf31 CCDC117 KREMEN1 ZNRF3 ENSG00000226471 XBP1 ENSG00000226772 RNU6-810P ZNRF3-AS1 ASCC2
GH22F029003 1.2 Ensembl ENCODE 8.1 +26.8 26784 2.3 ATF1 ARID4B DMAP1 ZNF48 ZSCAN9 RAD21 RARA ZNF335 SCRT2 CREM C22orf31 ZNRF3-AS1 ZNRF3-IT1
GH22F029016 1 Ensembl ENCODE 8.5 +14.6 14633 1.6 SOX13 CTCF ELF3 DRAP1 SAP130 ARID4B CEBPG RAD21 SCRT2 ZNF143 ZNRF3 C22orf31 CCDC117 ZNRF3-AS1 ZNRF3-IT1
GH22F028982 1.3 Ensembl ENCODE 5.9 +46.6 46581 5.5 MLX ARID4B DMAP1 ZNF48 YY1 ZNF121 FOS ZHX2 PPARG ZNF623 ZNRF3 C22orf31 ZNRF3-AS1 CCDC117 ZNRF3-IT1 GC22P028904
GH22F029021 0.8 ENCODE 8.3 +9.2 9240 1.6 HDGF ELF3 THRB RAD21 RARA YY1 CREM MIXL1 EGR2 CEBPA C22orf31 ZNRF3-AS1 ZNRF3 ZNRF3-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNRF3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZNRF3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001842802 776 1001 ARID4B ZNF48 YY1 GLIS2 GATA2 ZNF263 SP3 SP5 MIER2 REST

Genomic Location for ZNRF3-AS1 Gene

Chromosome:
22
Start:
29,024,999 bp from pter
End:
29,031,476 bp from pter
Size:
6,478 bases
Orientation:
Minus strand

Genomic View for ZNRF3-AS1 Gene

Genes around ZNRF3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNRF3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNRF3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNRF3-AS1 Gene

Proteins for ZNRF3-AS1 Gene

Post-translational modifications for ZNRF3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNRF3-AS1 Gene

Domains & Families for ZNRF3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNRF3-AS1 Gene

Function for ZNRF3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNRF3-AS1 Gene

Localization for ZNRF3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZNRF3-AS1 Gene

Pathways & Interactions for ZNRF3-AS1 Gene

SuperPathways for ZNRF3-AS1 Gene

No Data Available

Interacting Proteins for ZNRF3-AS1 Gene

Gene Ontology (GO) - Biological Process for ZNRF3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNRF3-AS1 Gene

Transcripts for ZNRF3-AS1 Gene

mRNA/cDNA for ZNRF3-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNRF3-AS1 Gene

ZNRF3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNRF3-AS1 Gene

No ASD Table

Relevant External Links for ZNRF3-AS1 Gene

GeneLoc Exon Structure for
ZNRF3-AS1
ECgene alternative splicing isoforms for
ZNRF3-AS1

Expression for ZNRF3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNRF3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ZNRF3-AS1 Gene

This gene is overexpressed in Adrenal Gland (x5.8) and Testis (x5.4).

SOURCE GeneReport for Unigene cluster for ZNRF3-AS1 Gene:

Hs.674708
genes like me logo Genes that share expression patterns with ZNRF3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZNRF3-AS1 Gene

Orthologs for ZNRF3-AS1 Gene

Evolution for ZNRF3-AS1 Gene

ENSEMBL:
Gene Tree for ZNRF3-AS1 (if available)
TreeFam:
Gene Tree for ZNRF3-AS1 (if available)

No data available for Orthologs for ZNRF3-AS1 Gene

Paralogs for ZNRF3-AS1 Gene

No data available for Paralogs for ZNRF3-AS1 Gene

Variants for ZNRF3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZNRF3-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs112356330 -- 29,030,602(+) CTTCT(C/T)CCGGT intron-variant
rs112771648 -- 29,031,348(+) CTTCT(-/ACC)ACCAC intron-variant
rs113128699 -- 29,029,606(+) ATAAC(C/T)GCGAA intron-variant
rs11322105 -- 29,027,278(+) AGTCT(-/C)ACTCT intron-variant
rs114430915 -- 29,033,071(+) TAGGC(C/T)GGGTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZNRF3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1064079 CNV gain 25217958

Relevant External Links for ZNRF3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNRF3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNRF3-AS1 Gene

Disorders for ZNRF3-AS1 Gene

Relevant External Links for ZNRF3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNRF3-AS1

No disorders were found for ZNRF3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNRF3-AS1 Gene

Publications for ZNRF3-AS1 Gene

  1. Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. (PMID: 25086665) Wolpin B.M. … Amundadottir L.T. (Nat. Genet. 2014) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for ZNRF3-AS1 Gene

Sources for ZNRF3-AS1 Gene

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