ZNRF2 Gene
protein-coding GIFtS: 49
GCID: GC07P030290
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|
zinc and ring finger 2
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Aliases
for ZNRF2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Zinc And Ring Finger 21 2 | | RING Finger Protein 2022 3 | | RNF2021 2 3 | | E3 Ubiquitin-Protein Ligase ZNRF22 | | Protein Ells22 3 | | Zinc Finger/RING Finger 22 | | Zinc/RING Finger Protein 22 3 | | EC 6.3.2.-3 |
Export aliases for ZNRF2 gene to outside databasesPrevious GC identifers: GC07P030068 GC07P030097 |
Summaries
for ZNRF2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: ZNRF2_HUMAN, Q8NHG8Function: May play a role in the establishment and maintenance of neuronal transmission and plasticity via itsubiquitin ligase activity. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the formof a thioester and then directly transfer the ubiquitin to targeted substrates
|
Genomic Views
for ZNRF2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000007.13 NC_018918.1 NT_007819.17 NT_079592.2
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the ZNRF2 gene promoter:
GR Pax-5 HSF1 (long) RORalpha1 PPAR-gamma1 USF-1 HSF1short PPAR-gamma2 GR-alpha LyF-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for ZNRF2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNRF2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 7p14.3 Ensembl cytogenetic band: 7p14.3 HGNC cytogenetic band: 7p15.1ZNRF2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07P030290: view genomic region
(about GC identifiers)
Start:
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30,323,923 bp from pter |
End:
|
30,452,118 bp from pter |
Size:
|
128,196 bases |
Orientation:
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plus strand |
1 alternative location:
| Chr7+,CRA_TCAG 30,373,689-30,457,078 |
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Proteins
for ZNRF2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: ZNRF2_HUMAN, Q8NHG8 (See
protein sequence)Recommended Name: E3 ubiquitin-protein ligase ZNRF2 Size: 242 amino acids; 24115 Da
Subunit: Interacts with UBE2N
Subcellular location: Endosome membrane; Peripheral membrane protein. Lysosome membrane; Peripheral membrane protein.Cell junction, synapse, presynaptic cell membrane; Peripheral membrane protein. Note=Present in presynaptic plasmamembranes in neuronsExplore the universe of human proteins at neXtProt for ZNRF2: NX_Q8NHG8
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q8NHG8
ZNRF2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_667339.1
ENSEMBL proteins: ENSP00000323879 ENSP00000456371
Human Recombinant Protein Products for ZNRF2:
Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view): About this table
ZNRF2 for ontologies About GeneDecksing
ZNRF2 Antibody Products:
Assay Products for ZNRF2: |
Protein
Domains /
Families
for ZNRF2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ZNRF2 for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q8NHG8ProtoNet protein and cluster: Q8NHG8 1 Blocks protein family: IPB001841 Zn-finger
UniProtKB/Swiss-Prot: ZNRF2_HUMAN, Q8NHG8Domain: The RING-type zinc finger domain is required for E3 ligase activity (By similarity)Similarity: Contains 1 RING-type zinc finger |
Function
for ZNRF2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: ZNRF2_HUMAN, Q8NHG8Function: May play a role in the establishment and maintenance of neuronal transmission and plasticity via itsubiquitin ligase activity. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the formof a thioester and then directly transfer the ubiquitin to targeted substrates Enzyme Number (IUBMB): EC 6.3.2.-1
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008270 | zinc ion binding |
IEA | -- | | GO:0016874 | ligase activity |
IEA | -- |
ZNRF2 for ontologies About GeneDecksing
Phenotypes:
2 GenomeRNAi human phenotypes for ZNRF2:
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ZNRF2 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZNRF2
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: ZNRF2 (NM_147128) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ZNRF2 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZNRF2 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNRF2 |
|
Pathways & Interactions
for ZNRF2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
UniProtKB/Swiss-Prot: ZNRF2_HUMAN, Q8NHG8Pathway: Protein modification; protein ubiquitinationInteractions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNRF2
STRING Interaction
Network Preview (showing 5 interactants - click image to see 6)
5/7 Interacting proteins for ZNRF2 (Q8NHG82, 3 ENSP000003238794) via UniProtKB, MINT, STRING, and/or I2D (see all 7) About this table
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016567 | protein ubiquitination |
IEA | -- |
ZNRF2 for ontologies About GeneDecksing
|
Drugs & Compounds
for ZNRF2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ZNRF2
4 HMDB Compounds for ZNRF2 About this table
Search CenterWatch for drugs/clinical trials and news about ZNRF2
|
Transcripts
for ZNRF2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for ZNRF2 gene: NM_147128.3 Unigene Cluster for ZNRF2: Zinc and ring finger 2 Hs.263912 [show with all ESTs]Unigene Representative Sequence: AF5137074 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000323037(uc003tat.3) ENST00000459998 ENST00000442800 ENST00000414621
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ZNRF2 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZNRF2
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: ZNRF2 (NM_147128) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ZNRF2 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZNRF2 |
Additional cDNA sequence: AF513707.1 AF527533.1 AK025240.1 AY054122.1 7 DOTS entries: DT.445901 DT.310584 DT.121108459 DT.91726658 DT.75128085 DT.121108533 DT.432266 24/190 AceView cDNA sequences (see all 190): AW000962 BM787187 CB155854 AI582195 CK904110 BI966092 AW118226 AI801498 AA749126 AA907191 BQ014946 AA904789 BM797760 AA825991 BX485301 BG427982 AW297790 AA453611 AI123940 NM_152747 AI902198 CK904111 AW166368 BM468619
GeneLoc Exon Structure
|
Expression
for ZNRF2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ZNRF2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TGTTATTACT
About this image
See ZNRF2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ZNRF2
SOURCE GeneReport for Unigene cluster: Hs.263912
UniProtKB/Swiss-Prot: ZNRF2_HUMAN, Q8NHG8Tissue specificity: Highly expressed in the brain, with higher expression during development than in adult. Expressedalso in mammary glands, testis, colon and kidney
SABiosciences Expression via Pathway-Focused PCR Array including ZNRF2: | Ubiquitin Ligases in human mouse rat |
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ZNRF2
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat ZNRF2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZNRF2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNRF2 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNRF2 |
Orthologs
for ZNRF2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for ZNRF2 gene from 6/18 species (see all 18) About this table
ENSEMBL Gene Tree for ZNRF2 (if available)
TreeFam Gene Tree for ZNRF2 (if available) |
Paralogs
for ZNRF2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for ZNRF2 gene
- ZNRF12
1 SIMAP similar gene for ZNRF2 using alignment to 2 protein entries: ZNRF2_HUMAN (see all proteins):ZNRF1
ZNRF2 for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for ZNRF2
PGOHUM00000232633
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Genomic Variants
for ZNRF2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 7 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for ZNRF2 (30323923 - 30452118 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for ZNRF2: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZNRF2 |
|
Disorders
/ Diseases
for ZNRF2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
ZNRF2 for disorders About GeneDecksing
OMIM gene information: 612061
OMIM disorders: --
1  disease for ZNRF2: About MalaCardsneuronitis
Export disorders for ZNRF2 gene to outside databases
|
Publications
for ZNRF2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ZNRF2 gene, integrated from 9 sources (see all 14):
(articles sorted by number of sources associating them with ZNRF2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- ZNRF proteins constitute a family of presynaptic E3 ubiquitin ligases. (PubMed id 14561866)1, 2, 9 Araki T. and Milbrandt J. (2003)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (2006)
- The RING finger protein RNF8 recruits UBC13 for lysine 63-based self polyubiquitylation. (PubMed id 16215985)1, 2 Plans V.... Thomson T.M. (2006)
- ZNRF2 is released from membranes by growth factors and , together with ZNRF1, regulates the Na+/K+ATPase. (PubMed id 22797923)1 Hoxhaj G....MacKintosh C. (2012)
- System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (2011)
- Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
- Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (2010)
- Analysis of electrostatic contributions to the selectivity of interactions between RING-finger domains and ubiquitin-conjugating enzymes. (PubMed id 18615712)1 Scheper J....Thomson T.M. (2009)
- Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (2009)
- A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system. (PubMed id 19690564)1 van Wijk S.J....Timmers H.T. (2009)
|
External Searches for ZNRF2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing ZNRF2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ZNRF2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ZNRF2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ZNRF2 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for ZNRF2 gene:
Search GeneIP for patents involving ZNRF2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ZNRF2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | Browse OriGene shRNA RFPs | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ZNRF2 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ZNRF2 | | | OriGene Protein Over-expression Lysate for ZNRF2 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for ZNRF2 | | OriGene 3'-UTR Clone for ZNRF2 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZNRF2 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ZNRF2 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ZNRF2 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZNRF2 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNRF2 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ZNRF2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNRF2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZNRF2 |
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| |  |  |  |  | | | | |
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 | | | ZNRF2 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNRF2 |
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| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZNRF2 |
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