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Aliases for ZNRD1ASP Gene

Aliases for ZNRD1ASP Gene

  • Zinc Ribbon Domain Containing 1 Antisense, Pseudogene 2 3 5
  • ZNRD1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ZNRD1 Antisense RNA (Non-Protein Coding) 2 3
  • Putative Uncharacterized Protein ZNRD1-AS1 3
  • Chromosome 6 Open Reading Frame 12 2
  • ZNRD1 Antisense Gene Protein 1 3
  • Non-Protein Coding RNA 171 2
  • ZNRD1 Antisense RNA 1 2
  • Protein HTEX4 3
  • NCRNA00171 3
  • ZNRD1-AS1 3
  • ZNRD1AS1 3
  • ZNRD1-AS 3
  • C6orf12 3
  • ZNRD1AS 3
  • TCTEX4 3
  • HTEX4 3

External Ids for ZNRD1ASP Gene

Previous HGNC Symbols for ZNRD1ASP Gene

  • C6orf12
  • NCRNA00171
  • ZNRD1AS
  • ZNRD1-AS
  • ZNRD1-AS1

Previous GeneCards Identifiers for ZNRD1ASP Gene

  • GC06M030086
  • GC06M030164

Summaries for ZNRD1ASP Gene

GeneCards Summary for ZNRD1ASP Gene

ZNRD1ASP (Zinc Ribbon Domain Containing 1 Antisense, Pseudogene) is a Pseudogene. Diseases associated with ZNRD1ASP include Hypersensitivity Syndrome, Carbamazepine-Induced.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNRD1ASP Gene

Genomics for ZNRD1ASP Gene

Regulatory Elements for ZNRD1ASP Gene

Enhancers for ZNRD1ASP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F030162 0.9 ENCODE 40.8 -102.1 -102126 2.8 HDGF PKNOX1 ARNT ZFP64 SIN3A ARID4B FEZF1 DMAP1 ZNF2 YY1 HCG18 GTF2H4 PPP1R10 ETF1P1 DHX16 PAIP1P1 HLA-U ZNRD1ASP HCG4P7 TCF19
GH06F030194 0.4 ENCODE 40.8 -133.7 -133688 1.6 ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF302 SP3 SP5 MXD4 ZHX2 HCG18 GTF2H4 PPP1R10 ETF1P1 DHX16 PAIP1P1 ZNRD1ASP HCG4P7 TRIM31 GNL1
GH06F030907 1 ENCODE 31.3 -846.8 -846818 2.2 CREB3L1 YBX1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 NFYC HCG18 GTF2H4 DDX39B LY6G5B DHX16 ABCF1 VARS2 LSM2 PPP1R10 NFKBIL1
GH06F029751 0.5 ENCODE 22 +308.8 308797 2.0 PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A ZNF2 YY1 CBX5 ZNF143 RPL23AP1 MICE HCG4P5 IFITM4P ZNRD1ASP DHX16 ZFP57 ABCF1 HLA-A ETF1P1
GH06F030074 0.2 ENCODE 18.9 -14.2 -14203 1.9 ELF3 ARID4B ZNF48 RAD21 ZBTB40 ZNF2 RARA GLIS2 FOS THAP11 HCG4P3 HLA-K ZNRD1 ZNRD1ASP RNF39 PPP1R11
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZNRD1ASP on UCSC Golden Path with GeneCards custom track

Promoters for ZNRD1ASP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000487589 440 2001 HDGF PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for ZNRD1ASP Gene

Chromosome:
6
Start:
30,001,011 bp from pter
End:
30,061,640 bp from pter
Size:
60,630 bases
Orientation:
Minus strand

Genomic View for ZNRD1ASP Gene

Genes around ZNRD1ASP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNRD1ASP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNRD1ASP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for ZNRD1ASP Gene

Post-translational modifications for ZNRD1ASP Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNRD1ASP Gene

Domains & Families for ZNRD1ASP Gene

Suggested Antigen Peptide Sequences for ZNRD1ASP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for ZNRD1ASP Gene

Function for ZNRD1ASP Gene

Phenotypes for ZNRD1ASP Gene

genes like me logo Genes that share phenotypes with ZNRD1ASP: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNRD1ASP Gene

Localization for ZNRD1ASP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZNRD1ASP Gene

Pathways & Interactions for ZNRD1ASP Gene

SuperPathways for ZNRD1ASP Gene

No Data Available

Interacting Proteins for ZNRD1ASP Gene

Gene Ontology (GO) - Biological Process for ZNRD1ASP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNRD1ASP Gene

Transcripts for ZNRD1ASP Gene

Unigene Clusters for ZNRD1ASP Gene

ZNRD1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNRD1ASP Gene

No ASD Table

Relevant External Links for ZNRD1ASP Gene

GeneLoc Exon Structure for
ZNRD1ASP
ECgene alternative splicing isoforms for
ZNRD1ASP

Expression for ZNRD1ASP Gene

NURSA nuclear receptor signaling pathways regulating expression of ZNRD1ASP Gene:

ZNRD1ASP

SOURCE GeneReport for Unigene cluster for ZNRD1ASP Gene:

Hs.653168
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZNRD1ASP Gene

Orthologs for ZNRD1ASP Gene

Evolution for ZNRD1ASP Gene

ENSEMBL:
Gene Tree for ZNRD1ASP (if available)
TreeFam:
Gene Tree for ZNRD1ASP (if available)

No data available for Orthologs for ZNRD1ASP Gene

Paralogs for ZNRD1ASP Gene

No data available for Paralogs for ZNRD1ASP Gene

Variants for ZNRD1ASP Gene

Sequence variations from dbSNP and Humsavar for ZNRD1ASP Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10484549 -- 30,058,513(+) GACGA(C/T)TGTAG intron-variant
rs10550781 -- 30,025,738(+) TGTGA(-/CACAC)CACAT intron-variant
rs10580504 -- 30,042,304(+) GTATC(-/AA)GAGAC intron-variant
rs10745 -- 30,062,280(-) CGCAT(C/T)TGTCT nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs10807060 -- 30,023,157(+) TTAAA(A/G)CACTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNRD1ASP Gene

Variant ID Type Subtype PubMed ID
dgv1088e199 CNV deletion 23128226
dgv993e201 CNV deletion 23290073
esv1527047 CNV insertion 17803354
esv2641340 CNV deletion 19546169
esv2670487 CNV deletion 23128226
esv2731777 CNV deletion 23290073
esv2731778 CNV deletion 23290073
esv2759412 CNV gain+loss 17122850
esv3343005 CNV insertion 20981092
esv3411275 CNV duplication 20981092
esv3570888 CNV loss 25503493
esv3608501 CNV loss 21293372
nsv1074389 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv508398 CNV deletion 20534489
nsv601264 CNV loss 21841781
nsv601475 CNV loss 21841781
nsv819291 CNV loss 19587683
nsv969374 CNV duplication 23825009
nsv981126 CNV duplication 23825009
nsv981127 CNV duplication 23825009

Relevant External Links for ZNRD1ASP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNRD1ASP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNRD1ASP Gene

Disorders for ZNRD1ASP Gene

MalaCards: The human disease database

(1) MalaCards diseases for ZNRD1ASP Gene - From: DISEASES

Disorder Aliases PubMed IDs
hypersensitivity syndrome, carbamazepine-induced
  • toxic epidermal necrolysis
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for ZNRD1ASP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNRD1ASP
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNRD1ASP
genes like me logo Genes that share disorders with ZNRD1ASP: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ZNRD1ASP Gene

Publications for ZNRD1ASP Gene

  1. Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence both HBV infection and hepatocellular carcinoma development. (PMID: 25110835) Wen J. … Hu Z. (Mol. Carcinog. 2014) 2 3 64
  2. Transcriptional analysis of the 69-kb sequence centromeric to HLA-J: a dense and complex structure of five genes. (PMID: 11130983) Coriton O. … Mosser J. (Mamm. Genome 2000) 2 3 64
  3. HTEX4, a new human gene in the MHC class I region, undergoes alternative splicing and polyadenylation processes in testis. (PMID: 9553157) Lepourcelet M. … Mosser J. (Immunogenetics 1998) 2 3 64
  4. Genome-wide association study identifies multiple loci influencing human serum metabolite levels. (PMID: 22286219) Kettunen J. … Ripatti S. (Nat. Genet. 2012) 3 64
  5. Identification of independent risk loci for Graves' disease within the MHC in the Japanese population. (PMID: 21900946) Nakabayashi K. … Shirasawa S. (J. Hum. Genet. 2011) 3 64

Products for ZNRD1ASP Gene

Sources for ZNRD1ASP Gene

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