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Aliases for ZNRD1-AS1 Gene

Subcategory (RNA class) for ZNRD1-AS1 Gene

antisense

Quality Score for this RNA gene is

13

Aliases for ZNRD1-AS1 Gene

  • ZNRD1 Antisense RNA 1 2 3 4
  • HTEX4 3 4 6
  • ZNRD1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ZNRD1 Antisense RNA (Non-Protein Coding) 2 3
  • NCRNA00171 3 4
  • ZNRD1AS1 3 6
  • C6orf12 3 4
  • TCTEX4 3 6
  • Chromosome 6 Open Reading Frame 12 2
  • ZNRD1 Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 171 2
  • Protein HTEX4 4
  • ZNRD1-AS 3
  • ZNRD1AS 3

External Ids for ZNRD1-AS1 Gene

Previous HGNC Symbols for ZNRD1-AS1 Gene

  • C6orf12
  • NCRNA00171
  • ZNRD1AS
  • ZNRD1-AS

Previous GeneCards Identifiers for ZNRD1-AS1 Gene

  • GC06M029771
  • GC06M029979
  • GC06M029981
  • GC06M029987
  • GC06M029993
  • GC06M029995
  • GC06M030059

Summaries for ZNRD1-AS1 Gene

GeneCards Summary for ZNRD1-AS1 Gene

ZNRD1-AS1 (ZNRD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNRD1-AS1 Gene

Genomics for ZNRD1-AS1 Gene

Genomic Location for ZNRD1-AS1 Gene

Start:
30,001,011 bp from pter
End:
30,061,640 bp from pter
Size:
60,630 bases
Orientation:
Minus strand

Genomic View for ZNRD1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNRD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements for ZNRD1-AS1 Gene

Proteins for ZNRD1-AS1 Gene

  • Protein details for ZNRD1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q2KJ03-ZRAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein ZNRD1-AS1
    Protein Accession:
    Q2KJ03
    Secondary Accessions:

    Protein attributes for ZNRD1-AS1 Gene

    Size:
    187 amino acids
    Molecular mass:
    22371 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNRD1-AS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNRD1-AS1 Gene

Proteomics data for ZNRD1-AS1 Gene at MOPED

Post-translational modifications for ZNRD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNRD1-AS1 Gene

Domains for ZNRD1-AS1 Gene

Gene Families for ZNRD1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for ZNRD1-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for ZNRD1-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZNRD1-AS1: view

No data available for UniProtKB/Swiss-Prot for ZNRD1-AS1 Gene

Function for ZNRD1-AS1 Gene

Animal Model Products

miRNA for ZNRD1-AS1 Gene

miRTarBase miRNAs that target ZNRD1-AS1

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNRD1-AS1
    • Block miRNA regulation of ZNRD1-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for ZNRD1-AS1

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNRD1-AS1 Gene

    Localization for ZNRD1-AS1 Gene

    No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZNRD1-AS1 Gene

    Pathways for ZNRD1-AS1 Gene

    SuperPathways for ZNRD1-AS1 Gene

    No Data Available

    Interacting Proteins for ZNRD1-AS1 Gene

    Gene Ontology (GO) - Biological Process for ZNRD1-AS1 Gene

    None

    No data available for Pathways by source for ZNRD1-AS1 Gene

    Transcripts for ZNRD1-AS1 Gene

    mRNA/cDNA for ZNRD1-AS1 Gene

    Unigene Clusters for ZNRD1-AS1 Gene

    ZNRD1 antisense RNA 1:
    Representative Sequences:

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNRD1-AS1
      • Block miRNA regulation of ZNRD1-AS1 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for ZNRD1-AS1

      Primer Products

      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for ZNRD1-AS1 Gene

      No ASD Table

      Relevant External Links for ZNRD1-AS1 Gene

      GeneLoc Exon Structure for
      ZNRD1-AS1
      ECgene alternative splicing isoforms for
      ZNRD1-AS1

      Expression for ZNRD1-AS1 Gene

      mRNA expression in normal human tissues for ZNRD1-AS1 Gene

      Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ZNRD1-AS1 Gene

      SOURCE GeneReport for Unigene cluster for ZNRD1-AS1 Gene Hs.653168

      mRNA Expression by UniProt/SwissProt for ZNRD1-AS1 Gene

      Q2KJ03-ZRAS1_HUMAN
      Tissue specificity: Widely expressed at low levels, including testis.
      genes like me logo Genes that share expressions with ZNRD1-AS1: view

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for ZNRD1-AS1 Gene

      Orthologs for ZNRD1-AS1 Gene

      This gene was present in the common ancestor of human and mouse.

      Orthologs for ZNRD1-AS1 Gene

      Organism Taxonomy Gene Similarity Type Details
      mouse
      (Mus musculus)
      Mammalia Znrd1as 16
      Species with no ortholog for ZNRD1-AS1:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • chimpanzee (Pan troglodytes)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • cow (Bos Taurus)
      • dog (Canis familiaris)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • platypus (Ornithorhynchus anatinus)
      • rainbow trout (Oncorhynchus mykiss)
      • rat (Rattus norvegicus)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for ZNRD1-AS1 Gene

      ENSEMBL:
      Gene Tree for ZNRD1-AS1 (if available)
      TreeFam:
      Gene Tree for ZNRD1-AS1 (if available)

      Paralogs for ZNRD1-AS1 Gene

      No data available for Paralogs for ZNRD1-AS1 Gene

      Variants for ZNRD1-AS1 Gene

      Sequence variations from dbSNP and Humsavar for ZNRD1-AS1 Gene

      SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
      rs165255 -- 30,021,918(-) aaaca(C/G)tcaat intron-variant
      rs165256 -- 30,018,907(-) AAGGG(A/G)CTGTG intron-variant
      rs166325 -- 30,025,419(-) CAGCC(C/G)TGACC intron-variant
      rs166326 -- 30,035,083(-) AAAAA(C/T)GATGG nc-transcript-variant
      rs166327 -- 30,035,104(-) aacac(A/G)gatga nc-transcript-variant

      Structural Variations from Database of Genomic Variants (DGV) for ZNRD1-AS1 Gene

      Variant ID Type Subtype PubMed ID
      esv2670487 CNV Deletion 23128226
      dgv1910e1 CNV Complex 17122850
      nsv508398 CNV Loss 20534489
      dgv1040e201 CNV Deletion 23290073
      dgv1088e199 CNV Deletion 23128226
      esv2731777 CNV Deletion 23290073
      esv2641340 CNV Deletion 19546169
      esv2731778 CNV Deletion 23290073
      dgv6517n71 CNV Loss 21882294
      esv270150 CNV Insertion 20981092
      esv272388 CNV Insertion 20981092
      esv1527047 CNV Insertion 17803354
      nsv884047 CNV Loss 21882294
      nsv819291 CNV Loss 19587683
      nsv884048 CNV Loss 21882294

      Relevant External Links for ZNRD1-AS1 Gene

      HapMap Linkage Disequilibrium report
      ZNRD1-AS1

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNRD1-AS1 Gene

      Disorders for ZNRD1-AS1 Gene

      No disorders were found for ZNRD1-AS1 Gene.

      No data available for UniProtKB/Swiss-Prot for ZNRD1-AS1 Gene

      Publications for ZNRD1-AS1 Gene

      1. HTEX4, a new human gene in the MHC class I region, undergoes alternative splicing and polyadenylation processes in testis. (PMID: 9553157) Lepourcelet M. … Mosser J. (Immunogenetics 1998) 2 3 4
      2. Transcriptional analysis of the 69-kb sequence centromeric to HLA-J: a dense and complex structure of five genes. (PMID: 11130983) Coriton O. … Mosser J. (Mamm. Genome 2000) 2 3
      3. Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence both HBV infection and hepatocellular carcinoma development. (PMID: 25110835) Wen J. … Hu Z. (Mol. Carcinog. 2014) 2 3
      4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4
      5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

      Products for ZNRD1-AS1 Gene

      • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNRD1-AS1
        • QuantiTect SYBR Green Assays in human,mouse,rat
        • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
        • QuantiFast Probe-based Assays in human,mouse,rat
        • Predesigned siRNA for gene silencing in human,mouse,rat for ZNRD1-AS1
        • Block miRNA regulation of ZNRD1-AS1 using miScript Target Protectors

        Sources for ZNRD1-AS1 Gene

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