ZNRD1-AS1 Gene
RNA gene GIFtS: 29
GCID: GC06M029995
|
|
ZNRD1 antisense RNA 1(Previous names: chromosome 6 open reading frame 12, non-protein coding...)
(Previous symbols: C6orf12, NCRNA00171, ZNRD1AS, ZNRD1-AS)
| |
Aliases
for ZNRD1-AS1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
Subcategory (RNA class): antisense
Quality score for this RNA gene is 3
| Aliases |
|---|
| ZNRD1 Antisense RNA 11 2 3 | | Chromosome 6 Open Reading Frame 121 | | C6orf121 2 3 | | Non-Protein Coding RNA 1711 | | HTEX41 2 3 | | ZNRD1 Antisense RNA (Non-Protein Coding)1 | | NCRNA001711 2 3 | | ZNRD1 Antisense RNA 1 (Non-Protein Coding)1 | | ZNRD1-AS1 2 | | Protein HTEX43 | | ZNRD1AS1 2 | | ZNRD1 Antisense Gene Protein 13 | | Em:AB023056.31 | | |
Export aliases for ZNRD1-AS1 gene to outside databasesPrevious GC identifers: GC06M029771 GC06M029979 GC06M029981 GC06M029987 GC06M029993 |
Summaries
for ZNRD1-AS1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for ZNRD1-AS1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000006.11 NC_018917.1 NT_007592.15 NT_113891.2 NT_167244.1 NT_167245.1 NT_167246.1 NT_167247.1
- NT_167248.1 NT_167249.1
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for ZNRD1-AS1
Other transcription factors
Search SABiosciences Chromatin IP Primers for ZNRD1-AS1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNRD1-AS1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 6p22.1 Ensembl cytogenetic band: 6p22.1 HGNC cytogenetic band: 6p21.33ZNRD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M029995: view genomic region
(about GC identifiers)
Start:
|
29,968,788 bp from pter |
End:
|
30,029,417 bp from pter |
Size:
|
60,630 bases |
Orientation:
|
minus strand |
6/7 alternative locations (see all 7):
| Chr6-,ALT_REF_LOCI_4 29,887,020-29,947,217 | Chr6-,ALT_REF_LOCI_7 29,888,574-29,948,869 | Chr6-,ALT_REF_LOCI_1 29,913,794-29,974,101 | | Chr6-,ALT_REF_LOCI_5 29,962,075-30,022,285 | Chr6-,ALT_REF_LOCI_3 29,970,027-30,030,332 | Chr6-,ALT_REF_LOCI_6 29,993,886-30,054,146 | |
|
Proteins
for ZNRD1-AS1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: ZRAS1_HUMAN, Q2KJ03 (See
protein sequence)Recommended Name: Putative uncharacterized protein ZNRD1-AS1 Size: 187 amino acids; 22371 Da
Caution: Product of a dubious CDS predictionAlternative splicing: 2 isoforms: Q2KJ03-1 Q2KJ03-2 Explore the universe of human proteins at neXtProt for ZNRD1-AS1: NX_Q2KJ03
ZNRD1-AS1 Protein expression data from MOPED and PaxDb: About this image 
Human Recombinant Protein Products:
ZNRD1-AS1 Antibody Products:
Assay Products for ZNRD1-AS1: |
Protein
Domains /
Families
for ZNRD1-AS1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q2KJ03 |
Function
for ZNRD1-AS1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNRD1-AS1 |
|
Pathways & Interactions
for ZNRD1-AS1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNRD1-AS1
|
Drugs & Compounds
for ZNRD1-AS1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for ZNRD1-AS1
Search CenterWatch for drugs/clinical trials and news about ZNRD1-AS1 
|
Transcripts
for ZNRD1-AS1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
Unigene Cluster for ZNRD1-AS1: ZNRD1 antisense RNA 1 Hs.744187 [show with all ESTs]Unigene Representative Sequence: CR93362910 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000425604 ENST00000448093 ENST00000376797 ENST00000420251(uc011dme.2)
ENST00000444051 ENST00000437417 ENST00000422224 ENST00000421692(uc003nox.1)
ENST00000431012(uc003rto.3) ENST00000452229
Additional cDNA sequence: AF032109.2 AF032110.1 AF032111.1 AF238323.1 AK055123.1 AK126001.1 BC034573.1 BC036766.1 BC067890.1 BX648746.1 CR933629.1 L19689.1 L19692.1 NR_026751.1 X92110.1 23 DOTS entries: DT.95367099 DT.92016298 DT.92004981 DT.121346042 DT.311764 DT.402222 DT.101968978 DT.95228016 DT.100711700 DT.121346167 DT.121346217 DT.40231607 DT.91783965 DT.121345698 DT.40114307 DT.454677 DT.91992374 DT.97823698 DT.100844024 DT.121346173 DT.121346203 DT.121346290 DT.91806393 24/29 AceView cDNA sequences (see all 29): L19693 AL547982 BE744018 CA488670 AW117311 CR611202 AF032110 AF032109 BC034573 BQ423269 AF032111 BF343945 AF238323 BU603207 BX327835 BC067890 BQ434771 AK126001 BX648746 AW890647 X90532 AL572723 AL705833 BI827073
GeneLoc Exon Structure
|
Expression
for ZNRD1-AS1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| Expression evidence for ZNRD1-AS1:none
ZNRD1-AS1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: ATTATTTATT
About this image
See ZNRD1-AS1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ZNRD1-AS1
SOURCE GeneReport for Unigene cluster: Hs.744187
UniProtKB/Swiss-Prot: ZRAS1_HUMAN, Q2KJ03Tissue specificity: Widely expressed at low levels, including testis
SABiosciences Custom PCR Arrays for ZNRD1-AS1
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat ZNRD1-AS1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZNRD1-AS1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNRD1-AS1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNRD1-AS1 |
Orthologs
for ZNRD1-AS1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of human and mouse.
Orthologs for ZNRD1-AS1 gene from 1 species (see representative species ) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
mouse
(Mus musculus) |
Mammalia |
Znrd1as5 |
ZNRD1 antisense RNA |
-- |
|
17 (19.16 cM) 36958592 |
ENSEMBL Gene Tree for ZNRD1-AS1 (if available)
TreeFam Gene Tree for ZNRD1-AS1 (if available) |
Paralogs
for ZNRD1-AS1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for ZNRD1-AS1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 6 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for ZNRD1-AS1 (29968788 - 30029417 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for ZNRD1-AS1: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZNRD1-AS1 |
|
Disorders
/ Diseases
for ZNRD1-AS1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
ZNRD1-AS1 for disorders About GeneDecksing
2  diseases for ZNRD1-AS1: About MalaCardssystemic lupus erythematosus lupus erythematosus
Export disorders for ZNRD1-AS1 gene to outside databases
|
Publications
for ZNRD1-AS1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ZNRD1-AS1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with ZNRD1-AS1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- HTEX4, a new human gene in the MHC class I region, undergoes alternative splicing and polyadenylation processes in testis. (PubMed id 9553157)1, 2, 3 Lepourcelet M....Mosser J. (1998)
- Transcriptional analysis of the 69-kb sequence centromeric to HLA-J: a dense and complex structure of five genes. (PubMed id 11130983)1, 3 Coriton O.... Mosser J. (2000)
- Genome-wide association study identifies multiple loci influencing human serum metabolite levels. (PubMed id 22286219)1 Kettunen J....Ripatti S. (2012)
- Identification of independent risk loci for Graves' di sease within the MHC in the Japanese population. (PubMed id 21900946)1 Nakabayashi K....Shirasawa S. (2011)
- High-density SNP screening of the major histocompatib ility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PubMed id 19851445)1 Barcellos L.F....Criswell L.A. (2009)
- Common genetic variation and the control of HIV-1 in humans. (PubMed id 20041166)1 Fellay J....Goldstein D.B. (2009)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)2 Mungall A.J.... Beck S. (2003)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for ZNRD1-AS1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing ZNRD1-AS1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ZNRD1-AS1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ZNRD1-AS1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for ZNRD1-AS1 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for ZNRD1-AS1 gene:
Search GeneIP for patents involving ZNRD1-AS1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for ZNRD1-AS1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 |
| | | | |
 |
 |
|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ZNRD1-AS1 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZNRD1-AS1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNRD1-AS1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ZNRD1-AS1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNRD1-AS1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZNRD1-AS1 |
| |
 |  |  |  | |
| | | |  |  |  |  | | | | |
 |
 |
 |
 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNRD1-AS1 |
|  |  |  | | | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat ZNRD1-AS1 |
|
|
|
|
