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Aliases for ZNRD1-AS1 Gene

Subcategory (RNA class) for ZNRD1-AS1 Gene

antisense

Quality Score for this RNA gene is

13

Aliases for ZNRD1-AS1 Gene

  • ZNRD1 Antisense RNA 1 2 3 4
  • HTEX4 3 4 6
  • ZNRD1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ZNRD1 Antisense RNA (Non-Protein Coding) 2 3
  • NCRNA00171 3 4
  • ZNRD1AS1 3 6
  • C6orf12 3 4
  • TCTEX4 3 6
  • Chromosome 6 Open Reading Frame 12 2
  • ZNRD1 Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 171 2
  • Protein HTEX4 4
  • ZNRD1-AS 3
  • ZNRD1AS 3

External Ids for ZNRD1-AS1 Gene

Previous Symbols for ZNRD1-AS1 Gene

  • C6orf12
  • NCRNA00171
  • ZNRD1AS
  • ZNRD1-AS

Summaries for ZNRD1-AS1 Gene

GeneCards Summary for ZNRD1-AS1 Gene

ZNRD1-AS1 (ZNRD1 Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNRD1-AS1 Gene

Genomics for ZNRD1-AS1 Gene

Genomic Location for ZNRD1-AS1 Gene

Start:
30,001,011 bp from pter
End:
30,061,640 bp from pter
Size:
60,630 bases
Orientation:
Minus strand

Genomic View for ZNRD1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNRD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements for ZNRD1-AS1 Gene

Proteins for ZNRD1-AS1 Gene

  • Protein details for ZNRD1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q2KJ03-ZRAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein ZNRD1-AS1
    Protein Accession:
    Q2KJ03
    Secondary Accessions:

    Protein attributes for ZNRD1-AS1 Gene

    Size:
    187 amino acids
    Molecular mass:
    22371 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNRD1-AS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNRD1-AS1 Gene

Proteomics data for ZNRD1-AS1 Gene at MOPED

Post-translational modifications for ZNRD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNRD1-AS1 Gene

Domains for ZNRD1-AS1 Gene

Gene Families for ZNRD1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for ZNRD1-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with ZNRD1-AS1: view

No data available for UniProtKB/Swiss-Prot for ZNRD1-AS1 Gene

Function for ZNRD1-AS1 Gene

miRNA for ZNRD1-AS1 Gene

miRTarBase miRNAs that target ZNRD1-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNRD1-AS1 Gene

Localization for ZNRD1-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for ZNRD1-AS1 Gene

Pathways for ZNRD1-AS1 Gene

SuperPathways for ZNRD1-AS1 Gene

No Data Available

Interacting Proteins for ZNRD1-AS1 Gene

Gene Ontology (GO) - Biological Process for ZNRD1-AS1 Gene

None

No data available for Pathways by source for ZNRD1-AS1 Gene

Transcripts for ZNRD1-AS1 Gene

Unigene Clusters for ZNRD1-AS1 Gene

ZNRD1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNRD1-AS1 Gene

No ASD Table

Relevant External Links for ZNRD1-AS1 Gene

GeneLoc Exon Structure for
ZNRD1-AS1
ECgene alternative splicing isoforms for
ZNRD1-AS1

Expression for ZNRD1-AS1 Gene

mRNA expression in normal human tissues for ZNRD1-AS1 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ZNRD1-AS1 Gene

SOURCE GeneReport for Unigene cluster for ZNRD1-AS1 Gene Hs.653168

mRNA Expression by UniProt/SwissProt for ZNRD1-AS1 Gene

Q2KJ03-ZRAS1_HUMAN
Tissue specificity: Widely expressed at low levels, including testis.
genes like me logo Genes that share expressions with ZNRD1-AS1: view

Orthologs for ZNRD1-AS1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for ZNRD1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Znrd1as 16
Species with no ortholog for ZNRD1-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNRD1-AS1 Gene

ENSEMBL:
Gene Tree for ZNRD1-AS1 (if available)
TreeFam:
Gene Tree for ZNRD1-AS1 (if available)

Paralogs for ZNRD1-AS1 Gene

No data available for Paralogs for ZNRD1-AS1 Gene

Variants for ZNRD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZNRD1-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs165255 -- 30,021,918(-) aaaca(C/G)tcaat intron-variant
rs165256 -- 30,018,907(-) AAGGG(A/G)CTGTG intron-variant
rs166325 -- 30,025,419(-) CAGCC(C/G)TGACC intron-variant
rs166326 -- 30,035,083(-) AAAAA(C/T)GATGG nc-transcript-variant
rs166327 -- 30,035,104(-) aacac(A/G)gatga nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNRD1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2670487 CNV Deletion 23128226
dgv1910e1 CNV Complex 17122850
nsv508398 CNV Loss 20534489
dgv1040e201 CNV Deletion 23290073
dgv1088e199 CNV Deletion 23128226
esv2731777 CNV Deletion 23290073
esv2641340 CNV Deletion 19546169
esv2731778 CNV Deletion 23290073
dgv6517n71 CNV Loss 21882294
esv270150 CNV Insertion 20981092
esv272388 CNV Insertion 20981092
esv1527047 CNV Insertion 17803354
nsv884047 CNV Loss 21882294
nsv819291 CNV Loss 19587683
nsv884048 CNV Loss 21882294

Relevant External Links for ZNRD1-AS1 Gene

HapMap Linkage Disequilibrium report
ZNRD1-AS1

Disorders for ZNRD1-AS1 Gene

No disorders were found for ZNRD1-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for ZNRD1-AS1 Gene

Publications for ZNRD1-AS1 Gene

  1. HTEX4, a new human gene in the MHC class I region, undergoes alternative splicing and polyadenylation processes in testis. (PMID: 9553157) Lepourcelet M. … Mosser J. (Immunogenetics 1998) 2 3 4
  2. Transcriptional analysis of the 69-kb sequence centromeric to HLA-J: a dense and complex structure of five genes. (PMID: 11130983) Coriton O. … Mosser J. (Mamm. Genome 2000) 2 3
  3. Expression quantitative trait loci in long non-coding RNA ZNRD1-AS1 influence both HBV infection and hepatocellular carcinoma development. (PMID: 25110835) Wen J. … Hu Z. (Mol. Carcinog. 2014) 2 3
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for ZNRD1-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNRD1-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ZNRD1-AS1
    • Block miRNA regulation of ZNRD1-AS1 using miScript Target Protectors

    Sources for ZNRD1-AS1 Gene

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