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Aliases for ZNHIT6 Gene

Aliases for ZNHIT6 Gene

  • Zinc Finger HIT-Type Containing 6 2 3
  • Serologically Defined Breast Cancer Antigen NY-BR-75 3 4
  • Zinc Finger HIT Domain-Containing Protein 6 3 4
  • Zinc Finger, HIT-Type Containing 6 3 5
  • Zinc Finger, HIT Type 6 2 3
  • C1orf181 3 4
  • BCD1 3 4
  • Box C/D SnoRNA Essential 1 Homolog (S. Cerevisiae) 2
  • Chromosome 1 Open Reading Frame 181 2
  • Box C/D SnoRNA Essential 1 Homolog 3
  • NY-BR-75 3

External Ids for ZNHIT6 Gene

Previous HGNC Symbols for ZNHIT6 Gene

  • C1orf181

Previous GeneCards Identifiers for ZNHIT6 Gene

  • GC01M085891
  • GC01M086118
  • GC01M084225

Summaries for ZNHIT6 Gene

GeneCards Summary for ZNHIT6 Gene

ZNHIT6 (Zinc Finger HIT-Type Containing 6) is a Protein Coding gene. GO annotations related to this gene include identical protein binding and enzyme binding.

UniProtKB/Swiss-Prot for ZNHIT6 Gene

  • Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNHIT6 Gene

Genomics for ZNHIT6 Gene

Regulatory Elements for ZNHIT6 Gene

Enhancers for ZNHIT6 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around ZNHIT6 on UCSC Golden Path with GeneCards custom track

Promoters for ZNHIT6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ZNHIT6 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZNHIT6 Gene

Chromosome:
1
Start:
85,649,423 bp from pter
End:
85,708,463 bp from pter
Size:
59,041 bases
Orientation:
Minus strand

Genomic View for ZNHIT6 Gene

Genes around ZNHIT6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNHIT6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNHIT6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNHIT6 Gene

Proteins for ZNHIT6 Gene

  • Protein details for ZNHIT6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NWK9-BCD1_HUMAN
    Recommended name:
    Box C/D snoRNA protein 1
    Protein Accession:
    Q9NWK9
    Secondary Accessions:
    • B2RBA1
    • B4DP13
    • D3DT20
    • Q9H278
    • Q9H3X3
    • Q9NWN0

    Protein attributes for ZNHIT6 Gene

    Size:
    470 amino acids
    Molecular mass:
    53918 Da
    Quaternary structure:
    • Interacts with FBL, SNU13, NOP58, NUFIP1, RUVBL1, RUVBL2 and TAF9.
    SequenceCaution:
    • Sequence=AAG48263.1; Type=Frameshift; Positions=365, 412, 416, 419, 432; Evidence={ECO:0000305}; Sequence=BAA91349.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNHIT6 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNHIT6 Gene

Proteomics data for ZNHIT6 Gene at MOPED

Post-translational modifications for ZNHIT6 Gene

  • Ubiquitination at Lys 229, Lys 362, and Lys 424
  • Modification sites at PhosphoSitePlus

Other Protein References for ZNHIT6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNHIT6 Gene

Domains & Families for ZNHIT6 Gene

Gene Families for ZNHIT6 Gene

Protein Domains for ZNHIT6 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for ZNHIT6 Gene

Graphical View of Domain Structure for InterPro Entry

Q9NWK9

UniProtKB/Swiss-Prot:

BCD1_HUMAN :
  • Belongs to the BCD1 family.
  • Contains 1 HIT-type zinc finger.
Family:
  • Belongs to the BCD1 family.
Similarity:
  • Contains 1 HIT-type zinc finger.
genes like me logo Genes that share domains with ZNHIT6: view

Function for ZNHIT6 Gene

Molecular function for ZNHIT6 Gene

UniProtKB/Swiss-Prot Function:
Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.

Gene Ontology (GO) - Molecular Function for ZNHIT6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001094 TFIID-class transcription factor binding IPI 17636026
GO:0005515 protein binding IPI 17636026
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNHIT6: view

Phenotypes for ZNHIT6 Gene

GenomeRNAi human phenotypes for ZNHIT6:
genes like me logo Genes that share phenotypes with ZNHIT6: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNHIT6 Gene

Localization for ZNHIT6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNHIT6 Gene COMPARTMENTS Subcellular localization image for ZNHIT6 gene
Compartment Confidence
extracellular 5
cytosol 4
nucleus 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ZNHIT6 Gene

Pathways & Interactions for ZNHIT6 Gene

SuperPathways for ZNHIT6 Gene

No Data Available

Interacting Proteins for ZNHIT6 Gene

Gene Ontology (GO) - Biological Process for ZNHIT6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0042254 ribosome biogenesis IEA --
genes like me logo Genes that share ontologies with ZNHIT6: view

No data available for Pathways by source and SIGNOR curated interactions for ZNHIT6 Gene

Drugs & Compounds for ZNHIT6 Gene

No Compound Related Data Available

Transcripts for ZNHIT6 Gene

Unigene Clusters for ZNHIT6 Gene

Zinc finger, HIT-type containing 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNHIT6 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11
SP1:
SP2:

Relevant External Links for ZNHIT6 Gene

GeneLoc Exon Structure for
ZNHIT6
ECgene alternative splicing isoforms for
ZNHIT6

Expression for ZNHIT6 Gene

mRNA expression in normal human tissues for ZNHIT6 Gene

Protein differential expression in normal tissues from HIPED for ZNHIT6 Gene

This gene is overexpressed in Lung (43.3), Liver (13.9), and Fetal Liver (7.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZNHIT6 Gene



SOURCE GeneReport for Unigene cluster for ZNHIT6 Gene Hs.5111

genes like me logo Genes that share expression patterns with ZNHIT6: view

Protein tissue co-expression partners for ZNHIT6 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZNHIT6 Gene

Orthologs for ZNHIT6 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ZNHIT6 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ZNHIT6 35
  • 86.02 (n)
  • 79.35 (a)
ZNHIT6 36
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZNHIT6 35
  • 84.63 (n)
  • 78.23 (a)
ZNHIT6 36
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Znhit6 35
  • 79.21 (n)
  • 74.61 (a)
Znhit6 16
Znhit6 36
  • 73 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ZNHIT6 35
  • 99.65 (n)
  • 99.57 (a)
ZNHIT6 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Znhit6 35
  • 77.95 (n)
  • 72.38 (a)
oppossum
(Monodelphis domestica)
Mammalia ZNHIT6 36
  • 48 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 54 (a)
OneToMany
-- 36
  • 68 (a)
OneToMany
chicken
(Gallus gallus)
Aves ZNHIT6 35
  • 68.87 (n)
  • 65.37 (a)
ZNHIT6 36
  • 60 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ZNHIT6 36
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.6177 35
znhit6 35
  • 64.8 (n)
  • 59.6 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.25224 35
zebrafish
(Danio rerio)
Actinopterygii ZNHIT6 36
  • 33 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004678 35
  • 50 (n)
  • 38.6 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG1463 35
  • 44.35 (n)
  • 32.17 (a)
CG1463 36
  • 23 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea zhit-3 36
  • 16 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes BCD1 36
  • 18 (a)
OneToOne
BCD1 38
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 27 (a)
OneToMany
CSA.448 36
  • 31 (a)
OneToMany
Species with no ortholog for ZNHIT6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ZNHIT6 Gene

ENSEMBL:
Gene Tree for ZNHIT6 (if available)
TreeFam:
Gene Tree for ZNHIT6 (if available)

Paralogs for ZNHIT6 Gene

No data available for Paralogs for ZNHIT6 Gene

Variants for ZNHIT6 Gene

Sequence variations from dbSNP and Humsavar for ZNHIT6 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs17399721 - 85,708,260(+) CTTCC(C/T)TTCAT nc-transcript-variant, reference, missense
VAR_035721 A colorectal cancer sample
rs10791 -- 85,652,904(-) TTTGA(A/T)CTCAT utr-variant-3-prime
rs821377 -- 85,674,234(-) AAGCT(C/T)ATCTT intron-variant
rs821378 -- 85,673,406(-) ACATG(A/G)CTTAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNHIT6 Gene

Variant ID Type Subtype PubMed ID
nsv871471 CNV Gain 21882294
nsv509369 CNV Insertion 20534489
nsv506942 CNV Insertion 20534489

Variation tolerance for ZNHIT6 Gene

Residual Variation Intolerance Score: 63.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.68; 46.00% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNHIT6 Gene

HapMap Linkage Disequilibrium report
ZNHIT6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNHIT6 Gene

Disorders for ZNHIT6 Gene

Relevant External Links for ZNHIT6

Genetic Association Database (GAD)
ZNHIT6
Human Genome Epidemiology (HuGE) Navigator
ZNHIT6
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNHIT6

No disorders were found for ZNHIT6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNHIT6 Gene

Publications for ZNHIT6 Gene

  1. Humoral immunity to human breast cancer: antigen definition and quantitative analysis of mRNA expression. (PMID: 12747765) Scanlan M.J. … Old L.J. (Cancer Immun. 2001) 2 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3
  4. A high-confidence interaction map identifies SIRT1 as a mediator of acetylation of USP22 and the SAGA coactivator complex. (PMID: 23382074) Armour S.M. … Sinclair D.A. (Mol. Cell. Biol. 2013) 3
  5. Systematic analysis of human protein complexes identifies chromosome segregation proteins. (PMID: 20360068) Hutchins J.R. … Peters J.M. (Science 2010) 3

Products for ZNHIT6 Gene

Sources for ZNHIT6 Gene

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