Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZNF90 Gene

Aliases for ZNF90 Gene

  • Zinc Finger Protein 90 2 3 5
  • Zinc Finger Protein HTF9 3 4
  • Zinc Finger Protein 90 (HTF9) 2
  • HTF9 3

External Ids for ZNF90 Gene

Previous GeneCards Identifiers for ZNF90 Gene

  • GC19P020725
  • GC19P020580
  • GC19P020034
  • GC19P020073
  • GC19P020049
  • GC19P020076
  • GC19U900566
  • GC19P019977
  • GC19P020188

Summaries for ZNF90 Gene

GeneCards Summary for ZNF90 Gene

ZNF90 (Zinc Finger Protein 90) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and structural constituent of ribosome. An important paralog of this gene is ZNF66.

UniProtKB/Swiss-Prot for ZNF90 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF90 Gene

Genomics for ZNF90 Gene

Regulatory Elements for ZNF90 Gene

Enhancers for ZNF90 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F019374 0.7 Ensembl ENCODE 65.4 -701.0 -701042 4.5 PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 YY1 ZNF766 ZNF207 FOS ENSG00000268030 ZNF90 UPF1 ENSG00000267481 ENSG00000268938 ZNF253 ZNF506 ZNF14 GATAD2A ELL
GH19F019261 0.6 ENCODE 24.4 -816.2 -816179 0.5 HDAC1 ATF1 CREB3L1 NFRKB ZNF48 ZBTB40 ZNF766 CREM ZNF202 ZBTB2 ZNF90 ENSG00000268030 UPF1 ENSG00000267481 ZNF93 HAPLN4 ENSG00000280282
GH19F021019 0.5 Ensembl ENCODE 19.5 +944.3 944283 4.6 ATF1 PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 YY1 FOS KLF13 SP3 ZNF714 ZNF90 BNIP3P26 RPL7AP10 ZNF66 ZNF431 LOC641367 ZNF486 BNIP3P16 VN1R82P
GH19F019899 1 ENCODE 12.5 -176.8 -176836 3.0 ATF1 PKNOX1 SIN3A ZNF2 YY1 GTF3C2 ELK1 FOS YY2 NFYC ZNF93 ZNF506 ZNF66 ZNF90 ZNF101 ATP13A1 LOC101928960 BNIP3P24 ENSG00000267268 LOC102724360
GH19F019201 0.5 ENCODE 12.5 -875.0 -875028 2.1 ATF1 ARID4B SIN3A DMAP1 ZNF2 YY1 GTF3C2 KLF13 SP3 MXD4 UPF1 ENSG00000268030 ZNF90 HAPLN4 LOC101928960 ENSG00000268938 MAU2 NR2C2AP BORCS8 BORCS8-MEF2B
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZNF90 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF90 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000043653 807 2399 CTCF PKNOX1 USF1 SAP130 ARID4B MAX ZSCAN9 YY1 GATAD1 POLR2A

Genomic Location for ZNF90 Gene

Chromosome:
19
Start:
20,077,994 bp from pter
End:
20,127,076 bp from pter
Size:
49,083 bases
Orientation:
Plus strand

Genomic View for ZNF90 Gene

Genes around ZNF90 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF90 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF90 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF90 Gene

Proteins for ZNF90 Gene

  • Protein details for ZNF90 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q03938-ZNF90_HUMAN
    Recommended name:
    Zinc finger protein 90
    Protein Accession:
    Q03938
    Secondary Accessions:
    • B9EH87

    Protein attributes for ZNF90 Gene

    Size:
    601 amino acids
    Molecular mass:
    69058 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF90 Gene

Post-translational modifications for ZNF90 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF90 Gene

No data available for DME Specific Peptides for ZNF90 Gene

Domains & Families for ZNF90 Gene

Gene Families for ZNF90 Gene

Protein Domains for ZNF90 Gene

Suggested Antigen Peptide Sequences for ZNF90 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q03938

UniProtKB/Swiss-Prot:

ZNF90_HUMAN :
  • Contains 1 KRAB domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 15 C2H2-type zinc fingers.
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 15 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF90: view

Function for ZNF90 Gene

Molecular function for ZNF90 Gene

GENATLAS Biochemistry:
zinc finger protein 90 (HTF9),KRAB subfamily
UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF90 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding IBA --
GO:0003676 nucleic acid binding IEA --
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding NAS 2023909
GO:0003735 structural constituent of ribosome IEA --
genes like me logo Genes that share ontologies with ZNF90: view
genes like me logo Genes that share phenotypes with ZNF90: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF90 Gene

Localization for ZNF90 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF90 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF90 Gene COMPARTMENTS Subcellular localization image for ZNF90 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF90 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA,IBA --
GO:0005840 ribosome IEA --
genes like me logo Genes that share ontologies with ZNF90: view

Pathways & Interactions for ZNF90 Gene

SuperPathways for ZNF90 Gene

No Data Available

Interacting Proteins for ZNF90 Gene

Gene Ontology (GO) - Biological Process for ZNF90 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
GO:0006412 translation IEA --
genes like me logo Genes that share ontologies with ZNF90: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF90 Gene

Transcripts for ZNF90 Gene

mRNA/cDNA for ZNF90 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF90 Gene

Zinc finger protein 90:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF90 Gene

No ASD Table

Relevant External Links for ZNF90 Gene

GeneLoc Exon Structure for
ZNF90
ECgene alternative splicing isoforms for
ZNF90

Expression for ZNF90 Gene

mRNA expression in normal human tissues for ZNF90 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF90 Gene



NURSA nuclear receptor signaling pathways regulating expression of ZNF90 Gene:

ZNF90

SOURCE GeneReport for Unigene cluster for ZNF90 Gene:

Hs.55304
genes like me logo Genes that share expression patterns with ZNF90: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZNF90 Gene

Orthologs for ZNF90 Gene

This gene was present in the common ancestor of animals.

Orthologs for ZNF90 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF90 34 35
  • 99.22 (n)
cow
(Bos Taurus)
Mammalia -- 35
  • 53 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 47 (a)
ManyToMany
-- 35
  • 41 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 35
  • 38 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Zfp386 35
  • 33 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 54 (a)
ManyToMany
-- 35
  • 47 (a)
ManyToMany
-- 35
  • 39 (a)
ManyToMany
-- 35
  • 39 (a)
ManyToMany
-- 35
  • 36 (a)
ManyToMany
-- 35
  • 35 (a)
ManyToMany
-- 35
  • 35 (a)
ManyToMany
-- 35
  • 30 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG4046 36
  • 82 (a)
worm
(Caenorhabditis elegans)
Secernentea rps-16 36
  • 72 (a)
Species where no ortholog for ZNF90 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for ZNF90 Gene

ENSEMBL:
Gene Tree for ZNF90 (if available)
TreeFam:
Gene Tree for ZNF90 (if available)

Paralogs for ZNF90 Gene

(510) SIMAP similar genes for ZNF90 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ZNF90: view

Variants for ZNF90 Gene

Sequence variations from dbSNP and Humsavar for ZNF90 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10401782 -- 20,127,489(+) AAAGT(C/T)TCAGC intron-variant, downstream-variant-500B
rs10402272 -- 20,085,512(+) gcctc(A/G)gcctc intron-variant
rs10402970 -- 20,078,845(+) cggcc(A/G)ggcgc intron-variant
rs10403097 -- 20,086,083(+) ttgta(C/T)tgcaa intron-variant
rs10404281 -- 20,087,880(+) cagga(A/G)tgggg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF90 Gene

Variant ID Type Subtype PubMed ID
dgv3456n100 CNV gain 25217958
dgv3457n100 CNV gain 25217958
dgv509e201 CNV deletion 23290073
dgv6303n54 CNV loss 21841781
dgv630e199 CNV deletion 23128226
esv2718296 CNV deletion 23290073
esv2718298 CNV deletion 23290073
esv2718300 CNV deletion 23290073
esv2758748 CNV gain 17122850
esv34357 CNV gain 17911159
esv3643866 CNV loss 21293372
esv3643868 CNV loss 21293372
nsv1057107 CNV gain 25217958
nsv1059188 CNV loss 25217958
nsv1061846 CNV loss 25217958
nsv519535 CNV gain 19592680
nsv578804 CNV gain 21841781
nsv578805 CNV gain 21841781
nsv817820 CNV gain 17921354
nsv963020 CNV duplication 23825009

Variation tolerance for ZNF90 Gene

Residual Variation Intolerance Score: 80.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.11; 80.56% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF90 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF90

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF90 Gene

Disorders for ZNF90 Gene

Relevant External Links for ZNF90

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF90

No disorders were found for ZNF90 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF90 Gene

Publications for ZNF90 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 4 64
  2. Clustered organization of homologous KRAB zinc-finger genes with enhanced expression in human T lymphoid cells. (PMID: 8467795) Bellefroid E.J. … Martial J.A. (EMBO J. 1993) 2 3 64
  3. The evolutionarily conserved Kruppel-associated box domain defines a subfamily of eukaryotic multifingered proteins. (PMID: 2023909) Bellefroid E.J. … Martial J.A. (Proc. Natl. Acad. Sci. U.S.A. 1991) 3 4 64
  4. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3 64
  5. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64

Products for ZNF90 Gene

Sources for ZNF90 Gene

Content
Loading form....