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Aliases for ZNF890P Gene

Aliases for ZNF890P Gene

  • Zinc Finger Protein 890, Pseudogene 2 3 5

External Ids for ZNF890P Gene

Previous GeneCards Identifiers for ZNF890P Gene

  • GC07M005161
  • GC07M005076

Summaries for ZNF890P Gene

GeneCards Summary for ZNF890P Gene

ZNF890P (Zinc Finger Protein 890, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF890P Gene

Genomics for ZNF890P Gene

Regulatory Elements for ZNF890P Gene

Enhancers for ZNF890P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G004741 1.6 Ensembl ENCODE dbSUPER 7.2 +398.7 398653 8.5 HDGF FOXA2 MLX ARID4B SIN3A FEZF1 ZBTB7B YY1 FOS KLF13 AP5Z1 ZNF890P RBAKDN FOXK1 RADIL PIR62911 PIR42800
GH07G005551 2.1 FANTOM5 Ensembl ENCODE dbSUPER 5.2 -411.2 -411231 7.6 CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 USP42 ANKRD61 AP5Z1 ZNF890P EIF2AK1 CCZ1 ACTB WIPI2 ENSG00000272719 GC07M005530
GH07G005669 1.5 FANTOM5 Ensembl ENCODE dbSUPER 5.1 -526.9 -526940 4.2 BHLHE40 HLF CEBPB MAX NR2F2 ZFHX2 ZNF316 POLR2A CEBPA IKZF1 RNF216 ZNF890P USP42 TNRC18 FBXL18 EIF2AK1 WIPI2 RNF216-IT1 FSCN1
GH07G005856 0.7 ENCODE 7.5 -712.1 -712109 0.2 ZNF263 HDGF CTCF ZNF680 ZNF654 STAT1 RB1 TRIM22 NFXL1 REST ZNF815P ZNF890P OCM GC07P005828
GH07G005858 0.6 ENCODE 8.6 -714.1 -714139 0.2 CTCF SP3 POLR2A ZBTB11 KMT2B ZBTB40 MGA ZNF890P OCM GC07P005828
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF890P on UCSC Golden Path with GeneCards custom track

Promoters for ZNF890P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000208048 246 601 CTCF USF1 MXI1 IRF3 MAX SIN3A BMI1 EBF1 ZBTB40 RELA

Genomic Location for ZNF890P Gene

Chromosome:
7
Start:
5,121,239 bp from pter
End:
5,144,546 bp from pter
Size:
23,308 bases
Orientation:
Minus strand

Genomic View for ZNF890P Gene

Genes around ZNF890P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF890P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF890P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF890P Gene

Proteins for ZNF890P Gene

Post-translational modifications for ZNF890P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF890P Gene

Domains & Families for ZNF890P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF890P Gene

Function for ZNF890P Gene

Phenotypes for ZNF890P Gene

GenomeRNAi human phenotypes for ZNF890P:
genes like me logo Genes that share phenotypes with ZNF890P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF890P Gene

Localization for ZNF890P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZNF890P Gene

Pathways & Interactions for ZNF890P Gene

SuperPathways for ZNF890P Gene

No Data Available

Interacting Proteins for ZNF890P Gene

Gene Ontology (GO) - Biological Process for ZNF890P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF890P Gene

Drugs & Compounds for ZNF890P Gene

No Compound Related Data Available

Transcripts for ZNF890P Gene

mRNA/cDNA for ZNF890P Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF890P Gene

Zinc finger protein 890, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF890P Gene

No ASD Table

Relevant External Links for ZNF890P Gene

GeneLoc Exon Structure for
ZNF890P
ECgene alternative splicing isoforms for
ZNF890P

Expression for ZNF890P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF890P Gene

mRNA differential expression in normal tissues according to GTEx for ZNF890P Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x4.8), Brain - Hypothalamus (x4.4), Brain - Cortex (x4.4), and Brain - Anterior cingulate cortex (BA24) (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of ZNF890P Gene:

ZNF890P

SOURCE GeneReport for Unigene cluster for ZNF890P Gene:

Hs.690815
genes like me logo Genes that share expression patterns with ZNF890P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF890P Gene

Orthologs for ZNF890P Gene

Evolution for ZNF890P Gene

ENSEMBL:
Gene Tree for ZNF890P (if available)
TreeFam:
Gene Tree for ZNF890P (if available)

No data available for Orthologs for ZNF890P Gene

Paralogs for ZNF890P Gene

No data available for Paralogs for ZNF890P Gene

Variants for ZNF890P Gene

Sequence variations from dbSNP and Humsavar for ZNF890P Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000086202 -- 5,130,318(+) ATCTC(-/A)AAAAA intron-variant
rs1000124314 -- 5,142,479(+) GGGTG(A/T)CACTC intron-variant
rs1000352500 -- 5,138,653(+) AGGTG(-/AA)GAGTT intron-variant
rs1000409157 -- 5,142,648(+) GACAC(A/G)GGGTT intron-variant
rs1000436459 -- 5,130,539(+) AGCCT(C/G)GACCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF890P Gene

Variant ID Type Subtype PubMed ID
dgv3482n106 OTHER inversion 24896259
dgv6239n100 CNV gain 25217958
esv2657130 CNV deletion 23128226
esv2762643 CNV loss 21179565
esv3571584 CNV loss 25503493
esv3611968 CNV loss 21293372
nsv1027026 CNV loss 25217958
nsv1117693 CNV deletion 24896259
nsv436904 CNV insertion 17901297
nsv523630 CNV loss 19592680
nsv605981 CNV loss 21841781
nsv605982 CNV gain 21841781
nsv966750 CNV duplication 23825009
nsv971191 CNV duplication 23825009

Relevant External Links for ZNF890P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF890P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNF890P Gene

Disorders for ZNF890P Gene

Relevant External Links for ZNF890P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF890P

No disorders were found for ZNF890P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF890P Gene

Publications for ZNF890P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for ZNF890P Gene

Sources for ZNF890P Gene

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