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Aliases for ZNF880 Gene

Aliases for ZNF880 Gene

  • Zinc Finger Protein 880 2 3

External Ids for ZNF880 Gene

Previous GeneCards Identifiers for ZNF880 Gene

  • GC19P057568
  • GC19P052873
  • GC19P049203

Summaries for ZNF880 Gene

GeneCards Summary for ZNF880 Gene

ZNF880 (Zinc Finger Protein 880) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF860.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF880 Gene

Genomics for ZNF880 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ZNF880 Gene

Start:
52,369,914 bp from pter
End:
52,392,876 bp from pter
Size:
22,963 bases
Orientation:
Plus strand

Genomic View for ZNF880 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF880 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF880 Gene

No data available for Regulatory Elements for ZNF880 Gene

Proteins for ZNF880 Gene

  • Protein details for ZNF880 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PDB4-ZN880_HUMAN
    Recommended name:
    Zinc finger protein 880
    Protein Accession:
    Q6PDB4
    Secondary Accessions:
    • B4DNA6

    Protein attributes for ZNF880 Gene

    Size:
    577 amino acids
    Molecular mass:
    66762 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF880 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF880 Gene

Proteomics data for ZNF880 Gene at MOPED

Post-translational modifications for ZNF880 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF880 Gene

No data available for DME Specific Peptides for ZNF880 Gene

Domains for ZNF880 Gene

Gene Families for ZNF880 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF880 Gene

Suggested Antigen Peptide Sequences for ZNF880 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6PDB4

UniProtKB/Swiss-Prot:

ZN880_HUMAN :
  • Q6PDB4
Domain:
  • Contains 1 KRAB domain.
Similarity:
  • Contains 14 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF880: view

Function for ZNF880 Gene

Gene Ontology (GO) - Molecular Function for ZNF880 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF880: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF880 Gene

Localization for ZNF880 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF880 Gene COMPARTMENTS Subcellular localization image for ZNF880 gene
Compartment Confidence
nucleus 3
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for ZNF880 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
genes like me logo Genes that share ontologies with ZNF880: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ZNF880 Gene

Pathways for ZNF880 Gene

SuperPathways for ZNF880 Gene

No Data Available

Interacting Proteins for ZNF880 Gene

Gene Ontology (GO) - Biological Process for ZNF880 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with ZNF880: view

No data available for Pathways by source for ZNF880 Gene

Transcripts for ZNF880 Gene

Unigene Clusters for ZNF880 Gene

Zinc finger protein 880:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF880

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ZNF880
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF880 Gene

No ASD Table

Relevant External Links for ZNF880 Gene

GeneLoc Exon Structure for
ZNF880
ECgene alternative splicing isoforms for
ZNF880

Expression for ZNF880 Gene

mRNA expression in normal human tissues for ZNF880 Gene

SOURCE GeneReport for Unigene cluster for ZNF880 Gene Hs.502314

genes like me logo Genes that share expressions with ZNF880: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for ZNF880 Gene

Orthologs for ZNF880 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF880 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 79 (a)
ManyToMany
ZNF880 35
  • 90.24 (n)
  • 85.79 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 31 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 48 (a)
ManyToMany
Species with no ortholog for ZNF880:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF880 Gene

ENSEMBL:
Gene Tree for ZNF880 (if available)
TreeFam:
Gene Tree for ZNF880 (if available)

Paralogs for ZNF880 Gene

Selected SIMAP similar genes for ZNF880 Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for ZNF880 Gene

genes like me logo Genes that share paralogs with ZNF880: view

Variants for ZNF880 Gene

Sequence variations from dbSNP and Humsavar for ZNF880 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs11396 -- 52,373,230(+) CTGGT(A/C)TTTCT synonymous-codon, reference
rs14048 -- 52,373,132(+) GGGAC(A/G)TGGCC missense, reference
rs162116 -- 52,368,649(-) ACTAA(C/G)TTTCC upstream-variant-2KB
rs162127 -- 52,381,247(+) ATCCA(A/G)CCTCA intron-variant
rs162128 -- 52,378,566(-) gggtt(C/G)aagcg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF880 Gene

Variant ID Type Subtype PubMed ID
nsv833873 CNV Gain 17160897
dgv3978n71 CNV Loss 21882294
dgv3979n71 CNV Loss 21882294
nsv2536 CNV Loss 18451855
nsv507900 CNV Insertion 20534489
esv2750580 CNV Loss 17666407
nsv521079 CNV Loss 19592680
nsv511613 CNV Loss 21212237
nsv512590 CNV Loss 21212237
dgv657e199 CNV Deletion 23128226
esv2718781 CNV Deletion 23290073
esv28637 CNV Loss 19812545
dgv596n67 CNV Loss 20364138
nsv828615 CNV Loss 20364138
esv32843 CNV Loss 17666407

Relevant External Links for ZNF880 Gene

HapMap Linkage Disequilibrium report
ZNF880

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF880 Gene

Disorders for ZNF880 Gene

No disorders were found for ZNF880 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF880 Gene

Publications for ZNF880 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PMID: 22505724) Udeshi N.D. … Carr S.A. (Mol. Cell Proteomics 2012) 3
  3. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. Gene expression profile of human bone marrow stromal cells: high-throughput expressed sequence tag sequencing analysis. (PMID: 11827452) Jia L. … Francomano C.A. (Genomics 2002) 3

Products for ZNF880 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNF880
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF880
    • Block miRNA regulation of ZNF880 using miScript Target Protectors

    Sources for ZNF880 Gene

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