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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZNF876P Gene

pseudogene   GIFtS: 29
GCID: GC04P000201

Zinc Finger Protein 876, Pseudogene

  Search for ZNF876P
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Zinc Finger Protein 876, Pseudogene1 2

External Ids:    HGNC: 324721   Entrez Gene: 6422802   Ensembl: ENSG000001981557   UniProtKB: Q49A333   
ORGUL members:         
NONCODE14:n386353      

Export aliases for ZNF876P gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZNF876P Gene: 
ZNF876P (zinc finger protein 876, pseudogene) is a pseudogene, and is affiliated with the lncRNA class. GO annotations related to this gene include DNA binding and zinc ion binding.

UniProtKB/Swiss-Prot: Z876P_HUMAN, Q49A33
Function: May be involved in transcriptional regulation (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.2  NT_037622.5  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for ZNF876P
         Other transcription factors

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   Search SABiosciences Chromatin IP Primers for ZNF876P

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF876P


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4p16.3   Ensembl cytogenetic band:  4p16.3   HGNC cytogenetic band: 4p16.3

ZNF876P Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF876P gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P000201:  view genomic region     (about GC identifiers)

Start:
206,389 bp from pter      End:
249,774 bp from pter
Size:
43,386 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: Z876P_HUMAN, Q49A33 (See protein sequence)
Recommended Name: Putative zinc finger protein 876  
Size: 203 amino acids; 23384 Da
Subcellular location: Nucleus (Probable)
Caution: Product of a dubious gene prediction

Explore the universe of human proteins at neXtProt for ZNF876P: NX_Q49A33

Explore proteomics data for ZNF876P at MOPED 

ZNF876P Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

ZNF876P Protein Expression

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IEA--

ZNF876P for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
3 InterPro protein domains:
 IPR015880 Znf_C2H2-like
 IPR013087 Znf_C2H2/integrase_DNA-bd
 IPR007087 Znf_C2H2

Graphical View of Domain Structure for InterPro Entry Q49A33

ProtoNet protein and cluster: Q49A33

1 Blocks protein domain: IPB007086 C2H2-type zinc finger signature

UniProtKB/Swiss-Prot: Z876P_HUMAN, Q49A33
Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
Similarity: Contains 5 C2H2-type zinc fingers


ZNF876P for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: Z876P_HUMAN, Q49A33
Function: May be involved in transcriptional regulation (By similarity)

     Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003677DNA binding IEA--
GO:0046872metal ion binding IEA--
     
ZNF876P for ontologies           About GeneDecksing


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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNF876P

Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006351transcription, DNA-dependent IEA--
GO:0006355regulation of transcription, DNA-dependent IEA--

ZNF876P for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
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Search CenterWatch for drugs/clinical trials and news about ZNF876P

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for ZNF876P gene: 
NM_001039758.1  

Unigene Cluster for ZNF876P:

Zinc finger protein 876, pseudogene
Hs.673877  [show with all ESTs]
Unigene Representative Sequence: NR_027481
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000356347(uc010iba.3) ENST00000398732
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Additional mRNA sequence: 

BC028359.1 BC046475.1 NR_027481.1 

3 DOTS entries:

DT.86838863  DT.91954556  DT.92419137 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

ZNF876P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TAAATTGTTT
ZNF876P Expression
About this image


See ZNF876P Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ZNF876P

SOURCE GeneReport for Unigene cluster: Hs.673877
    SABiosciences Custom PCR Arrays for ZNF876P
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF876P

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
  --

ENSEMBL Gene Tree for ZNF876P (if available)
TreeFam Gene Tree for ZNF876P (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for ZNF876P gene
18/369 SIMAP similar genes for ZNF876P using alignment to 1 protein entry:     Z876P_HUMAN(see all similar genes):
ZNF78L1    ZFS-2    DKFZp686M04222    ZNF420    ZNF56    ZNF619
ZSCAN30    ZFS-6    ZNF66    ZKSCAN1    ZSCAN9    ZNF232
ZNF331    ZNF55    ZNF675    ZNF72    ZNF732    kr-znf3

ZNF876P for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/924 SNPs in ZNF876P are shown (see all 924)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 4 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1814226641,2
--204489(+) AAAAAA/TTTTTT 1 -- us2k10--------
rs1852726181,2
--204571(+) ACCTTC/GAATCT 1 -- us2k10--------
rs285599621,2
C,F--204626(+) GTTTGG/CGGCCC 1 -- us2k15Minor allele frequency- C:0.12WA NA CSA 243
rs286460271,2
C,F--204926(+) GAAAAT/CAGGGA 1 -- us2k16Minor allele frequency- C:0.12WA NA CSA 245
rs287592001,2
C,F,H--205097(+) TCCTTG/TTCTTC 1 -- us2k116Minor allele frequency- T:0.12NS NA WA CSA 1717
rs1883212341,2
C--205129(+) TTAACA/GTGGTA 1 -- us2k10--------
rs1175205111,2
C,F--205177(+) CCTTAG/AGCACT 1 -- us2k11Minor allele frequency- A:0.03EA 120
rs1448294441,2
--205260(+) AACTTC/GACCCG 1 -- us2k10--------
rs737935571,2
C,F--205345(+) TGGCAG/ACCTGC 1 -- us2k11Minor allele frequency- A:0.50WA 2
rs775839201,2
C,F--205362(+) GTCCCC/G/TTCTTG 1 -- us2k11WA 118

HapMap Linkage Disequilibrium report for ZNF876P (206389 - 249774 bp)

Structural Variations
     Database of Genomic Variants (DGV) 10/16 variations for ZNF876P (see all 16):    About this table     
Variant IDTypeSubtypePubMed ID
esv2671630CNV Deletion23128226
esv2668834CNV Deletion23128226
esv2456521CNV Deletion19546169
dgv914e199CNV Deletion23128226
esv2678209CNV Deletion23128226
esv3355CNV Duplication18987735
nsv878244CNV Loss21882294
nsv878236CNV Loss21882294
dgv5384n71CNV Loss21882294
nsv878233CNV Gain21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for ZNF876P gene integrated from 9 sources:
(articles sorted by number of sources associating them with ZNF876P)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W....Wilson R.K. (2005)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 642280 HGNC: 32472 Ensembl:ENSG00000198155 euGenes: HUgn642280 ECgene: ZNF876P
H-InvDB: ZNF876P

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
  --

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for ZNF876P gene:
Search GeneIP for patents involving ZNF876P

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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(GIFtS: 73)
transforming growth factor, beta 1
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