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Aliases for ZNF839 Gene

Aliases for ZNF839 Gene

  • Zinc Finger Protein 839 2 3
  • Renal Carcinoma Antigen NY-REN-50 3 4
  • C14orf131 3 4
  • Chromosome 14 Open Reading Frame 131 2

External Ids for ZNF839 Gene

Previous HGNC Symbols for ZNF839 Gene

  • C14orf131

Previous GeneCards Identifiers for ZNF839 Gene

  • GC14P101855
  • GC14P102786
  • GC14P082969

Summaries for ZNF839 Gene

GeneCards Summary for ZNF839 Gene

ZNF839 (Zinc Finger Protein 839) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF839 Gene

Genomics for ZNF839 Gene

Regulatory Elements for ZNF839 Gene

Genomic Location for ZNF839 Gene

Start:
102,317,377 bp from pter
End:
102,343,174 bp from pter
Size:
25,798 bases
Orientation:
Plus strand

Genomic View for ZNF839 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF839 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF839 Gene

Proteins for ZNF839 Gene

  • Protein details for ZNF839 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8K0R7-ZN839_HUMAN
    Recommended name:
    Zinc finger protein 839
    Protein Accession:
    A8K0R7
    Secondary Accessions:
    • B3KSD2
    • Q53FH5
    • Q6GPI5
    • Q86TU1
    • Q9BQ86
    • Q9NUU3

    Protein attributes for ZNF839 Gene

    Size:
    811 amino acids
    Molecular mass:
    87484 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA92026.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAD62594.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF839 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF839 Gene

Proteomics data for ZNF839 Gene at MOPED

Post-translational modifications for ZNF839 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF839 Gene

Domains for ZNF839 Gene

Protein Domains for ZNF839 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

A8K0R7

UniProtKB/Swiss-Prot:

ZN839_HUMAN :
  • A8K0R7
Similarity:
  • Contains 1 C2H2-type zinc finger.
genes like me logo Genes that share domains with ZNF839: view

No data available for Gene Families for ZNF839 Gene

Function for ZNF839 Gene

Gene Ontology (GO) - Molecular Function for ZNF839 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF839: view

Animal Model Products

CRISPR Products

miRNA for ZNF839 Gene

miRTarBase miRNAs that target ZNF839

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNF839 Gene

Localization for ZNF839 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF839 Gene COMPARTMENTS Subcellular localization image for ZNF839 gene
Compartment Confidence
nucleus 3
cytosol 2
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ZNF839 Gene

Pathways for ZNF839 Gene

SuperPathways for ZNF839 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF839: view

Pathways by source for ZNF839 Gene

2 Reactome pathways for ZNF839 Gene

Interacting Proteins for ZNF839 Gene

Gene Ontology (GO) - Biological Process for ZNF839 Gene

None

Transcripts for ZNF839 Gene

Unigene Clusters for ZNF839 Gene

Zinc finger protein 839:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF839

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF839 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b · 5c · 5d ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11
SP1: - - - -
SP2: - -
SP3: - - - -
SP4: -
SP5: -
SP6: - -
SP7: -
SP8:

Relevant External Links for ZNF839 Gene

GeneLoc Exon Structure for
ZNF839
ECgene alternative splicing isoforms for
ZNF839

Expression for ZNF839 Gene

mRNA expression in normal human tissues for ZNF839 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ZNF839 Gene

SOURCE GeneReport for Unigene cluster for ZNF839 Gene Hs.743359

genes like me logo Genes that share expressions with ZNF839: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZNF839 Gene

Orthologs for ZNF839 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF839 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF839 35
  • 98.4 (n)
  • 97.04 (a)
ZNF839 36
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZNF839 36
  • 61 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZNF839 35
  • 76.18 (n)
  • 65.33 (a)
ZNF839 36
  • 62 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zfp839 35
  • 67.29 (n)
  • 53.32 (a)
Zfp839 16
Zfp839 36
  • 50 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZNF839 36
  • 37 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ZNF839 36
  • 37 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zfp839 35
  • 67.8 (n)
  • 53.69 (a)
chicken
(Gallus gallus)
Aves ZNF839 36
  • 36 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ZNF839 36
  • 42 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii znf839 36
  • 21 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.453 36
  • 15 (a)
OneToOne
Species with no ortholog for ZNF839:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF839 Gene

ENSEMBL:
Gene Tree for ZNF839 (if available)
TreeFam:
Gene Tree for ZNF839 (if available)

Paralogs for ZNF839 Gene

Selected SIMAP similar genes for ZNF839 Gene using alignment to 8 proteins:

Pseudogenes.org Pseudogenes for ZNF839 Gene

genes like me logo Genes that share paralogs with ZNF839: view

No data available for Paralogs for ZNF839 Gene

Variants for ZNF839 Gene

Sequence variations from dbSNP and Humsavar for ZNF839 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs9464 - 102,341,334(-) TACTG(A/G)AGGGG reference, missense, intron-variant
rs11704 -- 102,342,318(+) AATGT(C/G)AATAT utr-variant-3-prime
rs16414 -- 102,342,221(-) GCTCT(-/GGCTC)CRCGG utr-variant-3-prime
rs1033868 -- 102,331,108(+) attat(A/G)tactt intron-variant
rs1053019 - 102,341,936(+) CGGTT(A/C)CCCTG missense, reference, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF839 Gene

Variant ID Type Subtype PubMed ID
nsv827062 CNV Gain 20364138
esv29657 CNV Gain 19812545

Relevant External Links for ZNF839 Gene

HapMap Linkage Disequilibrium report
ZNF839

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF839 Gene

Disorders for ZNF839 Gene

No disorders were found for ZNF839 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF839 Gene

Publications for ZNF839 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. A human MAP kinase interactome. (PMID: 20936779) Bandyopadhyay S. … Ideker T. (Nat. Methods 2010) 3
  3. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3
  4. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R. … Weissenbach J. (Nature 2003) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for ZNF839 Gene

Sources for ZNF839 Gene

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