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Aliases for ZNF836 Gene

Aliases for ZNF836 Gene

  • Zinc Finger Protein 836 2 3 5

External Ids for ZNF836 Gene

Previous GeneCards Identifiers for ZNF836 Gene

  • GC19M057352
  • GC19M052659
  • GC19M048989

Summaries for ZNF836 Gene

GeneCards Summary for ZNF836 Gene

ZNF836 (Zinc Finger Protein 836) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZNF160.

UniProtKB/Swiss-Prot for ZNF836 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF836 Gene

Genomics for ZNF836 Gene

Regulatory Elements for ZNF836 Gene

Enhancers for ZNF836 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F051393 1 FANTOM5 ENCODE 32.4 +776.6 776620 2.8 HDGF PKNOX1 ARNT WRNIP1 ZFP64 ARID4B SIN3A ZNF143 FOS KLF13 ZNF616 ZNF577 ZNF766 ZNF432 ZNF841 ZNF836 ZNF175 CTU1 ZNF350 C19orf84
GH19F051687 1 FANTOM5 ENCODE 29.8 +481.2 481177 6.9 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 ZNF808 ZNF137P ENSG00000268970 ZNF836 ENSG00000269825 ZNF841 ZNF616 ZNF577 ZNF350 ZNF766
GH19F052137 1.3 FANTOM5 ENCODE 25.8 +32.0 32036 3.3 PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143 FOS ZNF808 ZNF137P ENSG00000268970 ZNF816 ZNF350 ZNF836 ZNF600 ZNF468 ZNF616 ZNF841
GH19F051360 0.5 ENCODE 13.9 +806.7 806724 8.5 HDGF PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 VSIG10L ZNF836 POLD1 ZNF616 ZNF766 ENSG00000269483 SIGLEC8 RPL7P51 SIGLEC14 SIGLEC5
GH19F051338 0.7 ENCODE 11.7 +831.9 831882 2.8 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A YY1 ZNF416 ZNF143 FOS POLD1 ZNF616 ZNF766 ETFB CLDND2 NKG7 ZNF841 ZNF836 SIGLEC8 CEACAM18
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZNF836 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF836 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000348581 467 2401 HDGF ARID4B ZNF48 ZBTB40 ZNF121 SCRT2 THAP11 SP3 TBX21 ZNF518A

Genomic Location for ZNF836 Gene

Chromosome:
19
Start:
52,153,864 bp from pter
End:
52,171,667 bp from pter
Size:
17,804 bases
Orientation:
Minus strand

Genomic View for ZNF836 Gene

Genes around ZNF836 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF836 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF836 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF836 Gene

Proteins for ZNF836 Gene

  • Protein details for ZNF836 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZNA1-ZN836_HUMAN
    Recommended name:
    Zinc finger protein 836
    Protein Accession:
    Q6ZNA1

    Protein attributes for ZNF836 Gene

    Size:
    936 amino acids
    Molecular mass:
    107717 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF836 Gene

Post-translational modifications for ZNF836 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF836 Gene

Domains & Families for ZNF836 Gene

Gene Families for ZNF836 Gene

Suggested Antigen Peptide Sequences for ZNF836 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZNA1

UniProtKB/Swiss-Prot:

ZN836_HUMAN :
  • Contains 1 KRAB domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 25 C2H2-type zinc fingers.
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 25 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF836: view

Function for ZNF836 Gene

Molecular function for ZNF836 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF836 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF836: view

Phenotypes for ZNF836 Gene

genes like me logo Genes that share phenotypes with ZNF836: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF836 Gene

Localization for ZNF836 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF836 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF836 Gene COMPARTMENTS Subcellular localization image for ZNF836 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF836 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF836: view

Pathways & Interactions for ZNF836 Gene

SuperPathways for ZNF836 Gene

No Data Available

Interacting Proteins for ZNF836 Gene

Gene Ontology (GO) - Biological Process for ZNF836 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA,IBA --
genes like me logo Genes that share ontologies with ZNF836: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF836 Gene

Transcripts for ZNF836 Gene

Unigene Clusters for ZNF836 Gene

Zinc finger protein 836:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF836 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b ^ 7a · 7b · 7c · 7d
SP1: - - -
SP2: - - - -
SP3: - -
SP4: - - -
SP5: - - - - - -
SP6:

Relevant External Links for ZNF836 Gene

GeneLoc Exon Structure for
ZNF836
ECgene alternative splicing isoforms for
ZNF836

Expression for ZNF836 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF836 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF836 Gene



NURSA nuclear receptor signaling pathways regulating expression of ZNF836 Gene:

ZNF836

SOURCE GeneReport for Unigene cluster for ZNF836 Gene:

Hs.631584
genes like me logo Genes that share expression patterns with ZNF836: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZNF836 Gene

Orthologs for ZNF836 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF836 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF836 34
  • 97.63 (n)
-- 35
  • 55 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 35
  • 54 (a)
ManyToMany
-- 35
  • 52 (a)
ManyToMany
-- 35
  • 51 (a)
ManyToMany
-- 35
  • 51 (a)
ManyToMany
-- 35
  • 46 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Zfp945 35
  • 39 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101734875 34
  • 54.58 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 47 (a)
ManyToMany
-- 35
  • 45 (a)
ManyToMany
-- 35
  • 42 (a)
ManyToMany
-- 35
  • 41 (a)
ManyToMany
CSA.1668 35
  • 38 (a)
ManyToMany
-- 35
  • 35 (a)
ManyToMany
Species where no ortholog for ZNF836 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF836 Gene

ENSEMBL:
Gene Tree for ZNF836 (if available)
TreeFam:
Gene Tree for ZNF836 (if available)

Paralogs for ZNF836 Gene

(493) SIMAP similar genes for ZNF836 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with ZNF836: view

Variants for ZNF836 Gene

Sequence variations from dbSNP and Humsavar for ZNF836 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10401750 -- 52,167,585(+) TAGAA(A/C)CAGTG intron-variant
rs10404391 -- 52,169,741(+) tgagc(A/G)gagat intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs10419054 -- 52,163,244(+) tgtca(A/G)aggcc intron-variant
rs10420136 -- 52,171,624(+) AAGAC(C/T)GGCCA upstream-variant-2KB, utr-variant-5-prime
rs111318601 -- 52,159,396(+) AATTA(C/T)GAAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF836 Gene

Variant ID Type Subtype PubMed ID
esv2718780 CNV deletion 23290073
esv2760529 CNV gain 21179565
esv2762047 CNV loss 21179565
esv3556561 CNV deletion 23714750
nsv1059417 CNV gain 25217958
nsv1140251 OTHER inversion 24896259
nsv580007 CNV gain 21841781
nsv817856 CNV gain 17921354
nsv960861 CNV duplication 23825009

Variation tolerance for ZNF836 Gene

Residual Variation Intolerance Score: 74.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.96; 89.91% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF836 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF836

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF836 Gene

Disorders for ZNF836 Gene

Relevant External Links for ZNF836

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF836

No disorders were found for ZNF836 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF836 Gene

Publications for ZNF836 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  2. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ZNF836 Gene

Sources for ZNF836 Gene

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