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Aliases for ZNF830 Gene

Aliases for ZNF830 Gene

  • Zinc Finger Protein 830 2 3
  • Coiled-Coil Domain-Containing Protein 16 3 4
  • Coiled-Coil Domain Containing 16 2 3
  • Orphan Maintenance Of Genome 1 2 3
  • CCDC16 3 4
  • Hypothetical Protein MGC20398 3
  • OMCG1 3

External Ids for ZNF830 Gene

Previous HGNC Symbols for ZNF830 Gene

  • CCDC16

Previous GeneCards Identifiers for ZNF830 Gene

  • GC17P030315
  • GC17P033288
  • GC17P029474

Summaries for ZNF830 Gene

GeneCards Summary for ZNF830 Gene

ZNF830 (Zinc Finger Protein 830) is a Protein Coding gene. Among its related pathways are DNA Double-Strand Break Repair and Transcription-Coupled Nucleotide Excision Repair (TC-NER). GO annotations related to this gene include nucleic acid binding.

UniProtKB/Swiss-Prot for ZNF830 Gene

  • May act as a regulator of the cell cycle in embryos by participating in control of M phase.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF830 Gene

Genomics for ZNF830 Gene

Regulatory Elements for ZNF830 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ZNF830 Gene

Chromosome:
17
Start:
34,961,530 bp from pter
End:
34,963,775 bp from pter
Size:
2,246 bases
Orientation:
Plus strand

Genomic View for ZNF830 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for ZNF830 Gene

Proteins for ZNF830 Gene

  • Protein details for ZNF830 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NB3-ZN830_HUMAN
    Recommended name:
    Zinc finger protein 830
    Protein Accession:
    Q96NB3
    Secondary Accessions:
    • Q96F60
    • Q96GZ5
    • Q9BU38

    Protein attributes for ZNF830 Gene

    Size:
    372 amino acids
    Molecular mass:
    41999 Da
    Quaternary structure:
    • Component of the XAB2 complex, a multimeric protein complex composed of XAB2, PRPF19, AQR, ZNF830, ISY1, and PPIE.

neXtProt entry for ZNF830 Gene

Proteomics data for ZNF830 Gene at MOPED

Post-translational modifications for ZNF830 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF830 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for ZNF830 Gene

Domains & Families for ZNF830 Gene

Protein Domains for ZNF830 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for ZNF830 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96NB3

UniProtKB/Swiss-Prot:

ZN830_HUMAN :
  • Contains 1 C2H2-type zinc finger.
Similarity:
  • Contains 1 C2H2-type zinc finger.
genes like me logo Genes that share domains with ZNF830: view

No data available for Gene Families for ZNF830 Gene

Function for ZNF830 Gene

Molecular function for ZNF830 Gene

UniProtKB/Swiss-Prot Function:
May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Gene Ontology (GO) - Molecular Function for ZNF830 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0005515 protein binding IPI 22365833
GO:0008270 zinc ion binding --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF830: view
genes like me logo Genes that share phenotypes with ZNF830: view

Animal Models for ZNF830 Gene

MGI Knock Outs for ZNF830:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF830

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for ZNF830 Gene

Localization for ZNF830 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF830 Gene

Nucleus. Note=Excluded from nucleolus. {ECO:0000250 UniProtKB:Q8R1N0}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF830 Gene COMPARTMENTS Subcellular localization image for ZNF830 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF830 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm TAS --
GO:0005737 cytoplasm IDA --
GO:0016607 nuclear speck IEA --
genes like me logo Genes that share ontologies with ZNF830: view

Pathways & Interactions for ZNF830 Gene

genes like me logo Genes that share pathways with ZNF830: view

Gene Ontology (GO) - Biological Process for ZNF830 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001832 blastocyst growth IEA --
GO:0006281 DNA repair TAS --
GO:0006283 transcription-coupled nucleotide-excision repair TAS --
GO:0006289 nucleotide-excision repair TAS --
GO:0007067 mitotic nuclear division IBA --
genes like me logo Genes that share ontologies with ZNF830: view

No data available for SIGNOR curated interactions for ZNF830 Gene

Drugs & Compounds for ZNF830 Gene

No Compound Related Data Available

Transcripts for ZNF830 Gene

mRNA/cDNA for ZNF830 Gene

Unigene Clusters for ZNF830 Gene

Zinc finger protein 830:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF830

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF830 Gene

No ASD Table

Relevant External Links for ZNF830 Gene

GeneLoc Exon Structure for
ZNF830
ECgene alternative splicing isoforms for
ZNF830

Expression for ZNF830 Gene

mRNA expression in normal human tissues for ZNF830 Gene

Protein differential expression in normal tissues from HIPED for ZNF830 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (25.7), NK cells (8.2), and Pancreas (7.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZNF830 Gene



SOURCE GeneReport for Unigene cluster for ZNF830 Gene Hs.413678

genes like me logo Genes that share expression patterns with ZNF830: view

Protein tissue co-expression partners for ZNF830 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZNF830 Gene

Orthologs for ZNF830 Gene

This gene was present in the common ancestor of animals.

Orthologs for ZNF830 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ZNF830 35
  • 87.28 (n)
  • 85.75 (a)
ZNF830 36
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZNF830 35
  • 86.48 (n)
  • 86.39 (a)
ZNF830 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zfp830 35
  • 83.38 (n)
  • 84.85 (a)
Zfp830 16
Zfp830 36
  • 85 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ZNF830 35
  • 99.64 (n)
  • 99.19 (a)
ZNF830 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Zfp830 35
  • 82.34 (n)
  • 84.86 (a)
oppossum
(Monodelphis domestica)
Mammalia ZNF830 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ZNF830 36
  • 75 (a)
OneToOne
chicken
(Gallus gallus)
Aves ZNF830 35
  • 66.11 (n)
  • 64.43 (a)
ZNF830 36
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ZNF830 36
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.16211 35
znf830 35
  • 57.69 (n)
  • 54.73 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.16517 35
zebrafish
(Danio rerio)
Actinopterygii Dr.25429 35
zgc:77398 35
  • 57.87 (n)
  • 58.28 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.305 35
fruit fly
(Drosophila melanogaster)
Insecta CG11839 35
  • 49.02 (n)
  • 38.5 (a)
CG11839 36
  • 33 (a)
OneToOne
Species with no ortholog for ZNF830:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF830 Gene

ENSEMBL:
Gene Tree for ZNF830 (if available)
TreeFam:
Gene Tree for ZNF830 (if available)

Paralogs for ZNF830 Gene

No data available for Paralogs for ZNF830 Gene

Variants for ZNF830 Gene

Sequence variations from dbSNP and Humsavar for ZNF830 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
VAR_024059 -
VAR_024060 -
VAR_030940 -
VAR_030941 -
VAR_030942 -

Variation tolerance for ZNF830 Gene

Residual Variation Intolerance Score: 39.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.30; 88.26% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF830 Gene

HapMap Linkage Disequilibrium report
ZNF830

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ZNF830 Gene

Disorders for ZNF830 Gene

Relevant External Links for ZNF830

Genetic Association Database (GAD)
ZNF830
Human Genome Epidemiology (HuGE) Navigator
ZNF830
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF830
genes like me logo Genes that share disorders with ZNF830: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF830 Gene

Publications for ZNF830 Gene

  1. "Orphan" retrogenes in the human genome. (PMID: 23066043) Ciomborowska J. … MakaA8owska I. (Mol. Biol. Evol. 2013) 2 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  3. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 67
  4. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y. … Zou H. (J. Proteomics 2014) 67
  5. Dynamic protein-protein interaction wiring of the human spliceosome. (PMID: 22365833) Hegele A. … Stelzl U. (Mol. Cell 2012) 67

Products for ZNF830 Gene

Sources for ZNF830 Gene

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