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Aliases for ZNF823 Gene

Aliases for ZNF823 Gene

  • Zinc Finger Protein 823 2 3
  • ZFP 36 For A Zinc Finger Protein 2 3
  • Zinc Finger Protein ZFP-36 3 4
  • HSZFP36 3
  • ZFP36 4

External Ids for ZNF823 Gene

Summaries for ZNF823 Gene

GeneCards Summary for ZNF823 Gene

ZNF823 (Zinc Finger Protein 823) is a Protein Coding gene. Among its related pathways are Spinal Cord Injury and ErbB1 downstream signaling. An important paralog of this gene is ZNF709.

UniProtKB/Swiss-Prot for ZNF823 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF823 Gene

Genomics for ZNF823 Gene

Genomic Location for ZNF823 Gene

Start:
11,721,265 bp from pter
End:
11,739,009 bp from pter
Size:
17,745 bases
Orientation:
Minus strand

Genomic View for ZNF823 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF823 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF823 Gene

No data available for Regulatory Elements for ZNF823 Gene

Proteins for ZNF823 Gene

  • Protein details for ZNF823 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P16415-ZN823_HUMAN
    Recommended name:
    Zinc finger protein 823
    Protein Accession:
    P16415
    Secondary Accessions:
    • A0PJL4
    • B7Z8D4
    • Q6P4A9

    Protein attributes for ZNF823 Gene

    Size:
    610 amino acids
    Molecular mass:
    70270 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAA36064.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF823 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF823 Gene

Proteomics data for ZNF823 Gene at MOPED

Post-translational modifications for ZNF823 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF823 Gene

No data available for DME Specific Peptides for ZNF823 Gene

Domains for ZNF823 Gene

Gene Families for ZNF823 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF823 Gene

Suggested Antigen Peptide Sequences for ZNF823 Gene

Graphical View of Domain Structure for InterPro Entry

P16415

UniProtKB/Swiss-Prot:

ZN823_HUMAN
Domain:
  • Contains 1 KRAB domain.:
    • P16415
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • P16415
Similarity:
  • Contains 16 C2H2-type zinc fingers.:
    • P16415
genes like me logo Genes that share domains with ZNF823: view

Function for ZNF823 Gene

Molecular function for ZNF823 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF823 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF823: view

miRNA for ZNF823 Gene

miRTarBase miRNAs that target ZNF823

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNF823 Gene

Localization for ZNF823 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF823 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF823 Gene COMPARTMENTS Subcellular localization image for ZNF823 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF823 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF823: view

Pathways for ZNF823 Gene

genes like me logo Genes that share pathways with ZNF823: view

Pathways by source for ZNF823 Gene

Gene Ontology (GO) - Biological Process for ZNF823 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF823: view

Transcripts for ZNF823 Gene

Unigene Clusters for ZNF823 Gene

Zinc finger protein 823:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF823 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b · 4c · 4d
SP1:
SP2: -
SP3: -
SP4: - -

Relevant External Links for ZNF823 Gene

GeneLoc Exon Structure for
ZNF823
ECgene alternative splicing isoforms for
ZNF823

Expression for ZNF823 Gene

mRNA expression in normal human tissues for ZNF823 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZNF823 Gene

SOURCE GeneReport for Unigene cluster for ZNF823 Gene Hs.142167

genes like me logo Genes that share expressions with ZNF823: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZNF823 Gene

Orthologs for ZNF823 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF823 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF823 35
  • 99.56 (n)
  • 99.67 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 50 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Zfp81 16
Species with no ortholog for ZNF823:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF823 Gene

ENSEMBL:
Gene Tree for ZNF823 (if available)
TreeFam:
Gene Tree for ZNF823 (if available)

Paralogs for ZNF823 Gene

Selected SIMAP similar genes for ZNF823 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with ZNF823: view

Variants for ZNF823 Gene

Sequence variations from dbSNP and Humsavar for ZNF823 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs5851 -- 11,721,468(-) ATATC(C/T)TCCAG utr-variant-3-prime
rs169582 -- 11,730,567(-) gtcag(A/G)gtctt intron-variant
rs286262 -- 11,736,800(+) cccca(A/G)tgctg intron-variant
rs286263 -- 11,739,342(-) CCCCG(A/G)GCTCC upstream-variant-2KB
rs286264 -- 11,739,928(+) AAAAG(C/G)GTTAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZNF823 Gene

Variant ID Type Subtype PubMed ID
nsv525966 CNV Gain 19592680
nsv911067 CNV Gain 21882294
nsv522659 CNV Loss 19592680
nsv518441 CNV Loss 19592680

Relevant External Links for ZNF823 Gene

HapMap Linkage Disequilibrium report
ZNF823

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF823 Gene

Disorders for ZNF823 Gene

Relevant External Links for ZNF823

Genetic Association Database (GAD)
ZNF823
genes like me logo Genes that share disorders with ZNF823: view

No data available for UniProtKB/Swiss-Prot for ZNF823 Gene

Publications for ZNF823 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. A human MAP kinase interactome. (PMID: 20936779) Bandyopadhyay S. … Ideker T. (Nat. Methods 2010) 3
  4. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PMID: 22505724) Udeshi N.D. … Carr S.A. (Mol. Cell Proteomics 2012) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4

Products for ZNF823 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNF823
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF823
  • Block miRNA regulation of ZNF823 using miScript Target Protectors

Sources for ZNF823 Gene

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