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Aliases for ZNF813 Gene

Aliases for ZNF813 Gene

  • Zinc Finger Protein 813 2 3

External Ids for ZNF813 Gene

Previous GeneCards Identifiers for ZNF813 Gene

  • GC19P058686
  • GC19P058664
  • GC19P053970
  • GC19P050291

Summaries for ZNF813 Gene

GeneCards Summary for ZNF813 Gene

ZNF813 (Zinc Finger Protein 813) is a Protein Coding gene. An important paralog of this gene is ZNF860.

UniProtKB/Swiss-Prot for ZNF813 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF813 Gene

Genomics for ZNF813 Gene

Regulatory Elements for ZNF813 Gene

Transcription factor binding sites by QIAGEN in the ZNF813 gene promoter:

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ZNF813 Gene

Start:
53,467,735 bp from pter
End:
53,496,255 bp from pter
Size:
28,521 bases
Orientation:
Plus strand

Genomic View for ZNF813 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF813 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF813 Gene

Proteins for ZNF813 Gene

  • Protein details for ZNF813 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZN06-ZN813_HUMAN
    Recommended name:
    Zinc finger protein 813
    Protein Accession:
    Q6ZN06
    Secondary Accessions:

    Protein attributes for ZNF813 Gene

    Size:
    617 amino acids
    Molecular mass:
    71721 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAD18569.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ZNF813 Gene

Proteomics data for ZNF813 Gene at MOPED

Post-translational modifications for ZNF813 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF813 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF813 Gene

Domains for ZNF813 Gene

Gene Families for ZNF813 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF813 Gene

Suggested Antigen Peptide Sequences for ZNF813 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZN06

UniProtKB/Swiss-Prot:

ZN813_HUMAN :
  • Q6ZN06
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 14 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF813: view

Function for ZNF813 Gene

Molecular function for ZNF813 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF813 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF813: view

Animal Model Products

CRISPR Products

miRNA for ZNF813 Gene

miRTarBase miRNAs that target ZNF813

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNF813 Gene

Localization for ZNF813 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF813 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF813 Gene COMPARTMENTS Subcellular localization image for ZNF813 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF813 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF813: view

Pathways for ZNF813 Gene

SuperPathways for ZNF813 Gene

No Data Available

Interacting Proteins for ZNF813 Gene

Gene Ontology (GO) - Biological Process for ZNF813 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF813: view

No data available for Pathways by source for ZNF813 Gene

Transcripts for ZNF813 Gene

mRNA/cDNA for ZNF813 Gene

(9) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(2) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF813 Gene

Zinc finger protein 813:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF813

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ZNF813
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF813 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b
SP1: -
SP2:
SP3: -

Relevant External Links for ZNF813 Gene

GeneLoc Exon Structure for
ZNF813
ECgene alternative splicing isoforms for
ZNF813

Expression for ZNF813 Gene

mRNA expression in normal human tissues for ZNF813 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZNF813 Gene

SOURCE GeneReport for Unigene cluster for ZNF813 Gene Hs.710780

genes like me logo Genes that share expressions with ZNF813: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZNF813 Gene

Orthologs for ZNF813 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF813 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 100 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 36
  • 42 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 54 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Zfp677 16
Species with no ortholog for ZNF813:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF813 Gene

ENSEMBL:
Gene Tree for ZNF813 (if available)
TreeFam:
Gene Tree for ZNF813 (if available)

Paralogs for ZNF813 Gene

Selected SIMAP similar genes for ZNF813 Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for ZNF813 Gene

genes like me logo Genes that share paralogs with ZNF813: view

Variants for ZNF813 Gene

Sequence variations from dbSNP and Humsavar for ZNF813 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1968829 -- 53,467,676(+) CCTGC(C/T)TCGTC upstream-variant-2KB
rs1968830 -- 53,468,095(+) CCAAG(A/G)GGTGG intron-variant
rs1984645 -- 53,467,421(-) AAACA(A/G)AATAG upstream-variant-2KB
rs1993880 -- 53,485,443(-) TCAAA(A/C)TATAT intron-variant
rs1993881 -- 53,481,066(-) ACACA(C/T)CTATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF813 Gene

Variant ID Type Subtype PubMed ID
nsv912342 CNV Gain 21882294
esv2718812 CNV Deletion 23290073
nsv912352 CNV Gain 21882294
dgv571e201 CNV Deletion 23290073
dgv3993n71 CNV Gain 21882294
nsv515728 CNV Gain+Loss 19592680
dgv1117e1 CNV Complex 17122850
dgv3994n71 CNV Gain 21882294
nsv912362 CNV Loss 21882294
dgv3995n71 CNV Gain+Loss 21882294
esv2491793 CNV Deletion 19546169
dgv3996n71 CNV Gain 21882294
nsv470156 CNV Gain 18288195
dgv431n27 CNV Gain 19166990
esv2718823 CNV Deletion 23290073
dgv661e199 CNV Deletion 23128226
dgv78e19 CNV Loss 19470904
nsv912376 CNV Loss 21882294
nsv912378 CNV Gain 21882294
dgv3997n71 CNV Gain 21882294
nsv912380 CNV Loss 21882294
dgv3998n71 CNV Gain 21882294
nsv458779 CNV Loss 19166990
esv2718824 CNV Deletion 23290073

Relevant External Links for ZNF813 Gene

HapMap Linkage Disequilibrium report
ZNF813
Human Gene Mutation Database (HGMD)
ZNF813

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF813 Gene

Disorders for ZNF813 Gene

Relevant External Links for ZNF813

Genetic Association Database (GAD)
ZNF813
Human Genome Epidemiology (HuGE) Navigator
ZNF813
genes like me logo Genes that share disorders with ZNF813: view

No data available for UniProtKB/Swiss-Prot for ZNF813 Gene

Publications for ZNF813 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3
  5. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PMID: 22505724) Udeshi N.D. … Carr S.A. (Mol. Cell Proteomics 2012) 3

Products for ZNF813 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNF813
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF813
  • Block miRNA regulation of ZNF813 using miScript Target Protectors

Sources for ZNF813 Gene

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