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Aliases for ZNF790-AS1 Gene

Subcategory (RNA class) for ZNF790-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZNF790-AS1 Gene

  • ZNF790 Antisense RNA 1 2 3 5
  • ZNF790 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTD-2162K18.5 3

External Ids for ZNF790-AS1 Gene

Previous GeneCards Identifiers for ZNF790-AS1 Gene

  • GC19P037291

Summaries for ZNF790-AS1 Gene

GeneCards Summary for ZNF790-AS1 Gene

ZNF790-AS1 (ZNF790 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF790-AS1 Gene

Genomics for ZNF790-AS1 Gene

Regulatory Elements for ZNF790-AS1 Gene

Enhancers for ZNF790-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F036113 0.2 ENCODE 58.1 -682.2 -682234 3.1 CREB3L1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF416 ZNF548 ZNF263 ZNF850 TMEM147-AS1 ZNF345 ZNF567 KMT2B ZNF568 ZNF790-AS1 HAUS5 ZNF420 ZNF461
GH19F036915 0.8 FANTOM5 ENCODE 54.7 +119.1 119117 1.9 PKNOX1 ARID4B SIN3A ZNF2 YY1 ZNF302 ZNF416 ZNF143 ZNF548 ZNF263 ZNF383 ZNF345 ZNF850 ZNF790-AS1 ZNF793 ZNF585A ZNF568 ZNF607 ZNF529 ZNF567
GH19F037505 0.5 ENCODE 53.2 +709.1 709082 2.4 PKNOX1 ZNF493 ZNF133 SIN3A ZNF2 ETS1 YY1 ZNF121 GLIS2 ZNF302 ZNF793 ZNF383 ZNF345 ZNF850 ZNF790-AS1 ZNF529 ZNF461 ZNF607 ZNF573 ZNF568
GH19F035882 0.7 Ensembl ENCODE 47.4 -915.1 -915118 0.4 ZFP64 ZNF493 ARID4B FEZF1 ZNF121 ZNF302 KLF7 ZNF202 SP3 MIER2 ZNF345 TMEM147-AS1 ZNF850 ZNF567 HAUS5 KMT2B ZNF790-AS1 ZNF146 ZNF792 ZNF790
GH19F037370 0.5 ENCODE 45.5 +573.5 573466 1.8 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF416 ZNF383 ZNF345 ZNF850 ZNF567 ZNF793 ZNF573 ZNF585A ZNF790-AS1 ZNF571 ZNF790
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZNF790-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF790-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000346081 83 2399 PKNOX1 ZNF133 SIN3A ZNF2 ZNF121 ZNF302 ELK1 CBX5 ZNF416 KLF7

Genomic Location for ZNF790-AS1 Gene

Chromosome:
19
Start:
36,797,518 bp from pter
End:
36,828,115 bp from pter
Size:
30,598 bases
Orientation:
Plus strand

Genomic View for ZNF790-AS1 Gene

Genes around ZNF790-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF790-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF790-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF790-AS1 Gene

Proteins for ZNF790-AS1 Gene

Post-translational modifications for ZNF790-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF790-AS1 Gene

Domains & Families for ZNF790-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF790-AS1 Gene

Function for ZNF790-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF790-AS1 Gene

Localization for ZNF790-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZNF790-AS1 Gene

Pathways & Interactions for ZNF790-AS1 Gene

SuperPathways for ZNF790-AS1 Gene

No Data Available

Interacting Proteins for ZNF790-AS1 Gene

Gene Ontology (GO) - Biological Process for ZNF790-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF790-AS1 Gene

Transcripts for ZNF790-AS1 Gene

mRNA/cDNA for ZNF790-AS1 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF790-AS1 Gene

ZNF790 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF790-AS1 Gene

No ASD Table

Relevant External Links for ZNF790-AS1 Gene

GeneLoc Exon Structure for
ZNF790-AS1
ECgene alternative splicing isoforms for
ZNF790-AS1

Expression for ZNF790-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF790-AS1 Gene

SOURCE GeneReport for Unigene cluster for ZNF790-AS1 Gene:

Hs.570010
genes like me logo Genes that share expression patterns with ZNF790-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZNF790-AS1 Gene

Orthologs for ZNF790-AS1 Gene

Evolution for ZNF790-AS1 Gene

ENSEMBL:
Gene Tree for ZNF790-AS1 (if available)
TreeFam:
Gene Tree for ZNF790-AS1 (if available)

No data available for Orthologs for ZNF790-AS1 Gene

Paralogs for ZNF790-AS1 Gene

No data available for Paralogs for ZNF790-AS1 Gene

Variants for ZNF790-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZNF790-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10403010 -- 36,818,218(+) CCCTG(A/C)TATTC intron-variant, downstream-variant-500B, utr-variant-3-prime
rs10417112 -- 36,804,561(+) gtggg(C/T)tcctg intron-variant
rs10417477 -- 36,804,686(+) tcctt(C/T)tcaaa intron-variant
rs10420413 -- 36,808,526(+) AGCTC(C/T)CAGAT intron-variant
rs10564276 -- 36,818,280(+) ATTCT(-/CTG)CTGCT intron-variant, downstream-variant-500B, cds-indel

Structural Variations from Database of Genomic Variants (DGV) for ZNF790-AS1 Gene

Variant ID Type Subtype PubMed ID
esv34384 CNV loss 17911159
esv3644270 CNV loss 21293372
nsv1064851 CNV loss 25217958
nsv469794 CNV loss 16826518
nsv521605 CNV loss 19592680
nsv817833 CNV loss 17921354
nsv963042 CNV duplication 23825009
nsv978810 CNV duplication 23825009

Relevant External Links for ZNF790-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF790-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZNF790-AS1 Gene

Disorders for ZNF790-AS1 Gene

Relevant External Links for ZNF790-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF790-AS1

No disorders were found for ZNF790-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF790-AS1 Gene

Publications for ZNF790-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for ZNF790-AS1 Gene

Sources for ZNF790-AS1 Gene

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