Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ZNF790 Gene

Aliases for ZNF790 Gene

  • Zinc Finger Protein 790 2 3 5

External Ids for ZNF790 Gene

Previous GeneCards Identifiers for ZNF790 Gene

  • GC19M041997
  • GC19M037308
  • GC19M033777

Summaries for ZNF790 Gene

GeneCards Summary for ZNF790 Gene

ZNF790 (Zinc Finger Protein 790) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding and transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZNF546.

UniProtKB/Swiss-Prot for ZNF790 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF790 Gene

Genomics for ZNF790 Gene

Regulatory Elements for ZNF790 Gene

Enhancers for ZNF790 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F035946 1.6 FANTOM5 Ensembl ENCODE 37.4 +903.3 903295 1.0 HDGF ARNT ARID4B SIN3A FEZF1 ZNF2 ZNF302 ZNF416 ZNF143 ZNF548 ZNF345 ZNF850 ZNF567 TMEM147-AS1 KMT2B HAUS5 ZNF792 RBM42 ZNF146 ZNF790-AS1
GH19F037653 1.2 ENCODE 43.2 -804.5 -804495 2.9 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF383 ZNF850 ZNF345 ZNF567 ZNF607 LINC01535 ZNF790-AS1 ZNF790 ZNF573 ZNF571
GH19F036113 1.2 ENCODE 42.5 +735.5 735503 3.1 CREB3L1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF416 ZNF548 ZNF263 ZNF850 TMEM147-AS1 ZNF345 ZNF567 KMT2B ZNF568 ZNF790-AS1 HAUS5 ZNF420 ZNF461
GH19F035882 1.3 Ensembl ENCODE 36.6 +968.4 968387 0.4 ZFP64 ZNF493 ARID4B FEZF1 ZNF121 ZNF302 KLF7 ZNF202 SP3 MIER2 ZNF345 TMEM147-AS1 ZNF850 ZNF567 HAUS5 KMT2B ZNF790-AS1 ZNF146 ZNF792 ZNF790
GH19F037370 1.1 ENCODE 41.8 -520.2 -520197 1.8 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF416 ZNF383 ZNF345 ZNF850 ZNF567 ZNF793 ZNF573 ZNF585A ZNF790-AS1 ZNF571 ZNF790
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF790 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF790 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000346084 287 3000 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF416 ZNF548

Genomic Location for ZNF790 Gene

Chromosome:
19
Start:
36,817,428 bp from pter
End:
36,850,787 bp from pter
Size:
33,360 bases
Orientation:
Minus strand

Genomic View for ZNF790 Gene

Genes around ZNF790 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF790 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF790 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF790 Gene

Proteins for ZNF790 Gene

  • Protein details for ZNF790 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PG37-ZN790_HUMAN
    Recommended name:
    Zinc finger protein 790
    Protein Accession:
    Q6PG37

    Protein attributes for ZNF790 Gene

    Size:
    636 amino acids
    Molecular mass:
    74571 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF790 Gene

Post-translational modifications for ZNF790 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF790 Gene

Domains & Families for ZNF790 Gene

Gene Families for ZNF790 Gene

Protein Domains for ZNF790 Gene

Suggested Antigen Peptide Sequences for ZNF790 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6PG37

UniProtKB/Swiss-Prot:

ZN790_HUMAN :
  • Contains 1 KRAB domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 13 C2H2-type zinc fingers.
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 13 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF790: view

Function for ZNF790 Gene

Molecular function for ZNF790 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF790 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF790: view

Phenotypes for ZNF790 Gene

GenomeRNAi human phenotypes for ZNF790:
genes like me logo Genes that share phenotypes with ZNF790: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF790 Gene

Localization for ZNF790 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF790 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF790 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF790 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF790: view

Pathways & Interactions for ZNF790 Gene

SuperPathways for ZNF790 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF790: view

Pathways by source for ZNF790 Gene

2 Reactome pathways for ZNF790 Gene

Gene Ontology (GO) - Biological Process for ZNF790 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with ZNF790: view

No data available for SIGNOR curated interactions for ZNF790 Gene

Transcripts for ZNF790 Gene

Unigene Clusters for ZNF790 Gene

Zinc finger protein 790:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF790 Gene

No ASD Table

Relevant External Links for ZNF790 Gene

GeneLoc Exon Structure for
ZNF790
ECgene alternative splicing isoforms for
ZNF790

Expression for ZNF790 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF790 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of ZNF790 Gene:

ZNF790

SOURCE GeneReport for Unigene cluster for ZNF790 Gene:

Hs.282067
genes like me logo Genes that share expression patterns with ZNF790: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZNF790 Gene

Orthologs for ZNF790 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF790 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF790 34
  • 99.42 (n)
-- 35
  • 43 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia ZNF790 34 35
  • 89.68 (n)
mouse
(Mus musculus)
Mammalia Zfp790 34 16 35
  • 64.58 (n)
Zfp940 35
  • 46 (a)
OneToMany
Species where no ortholog for ZNF790 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF790 Gene

ENSEMBL:
Gene Tree for ZNF790 (if available)
TreeFam:
Gene Tree for ZNF790 (if available)

Paralogs for ZNF790 Gene

(456) SIMAP similar genes for ZNF790 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with ZNF790: view

Variants for ZNF790 Gene

Sequence variations from dbSNP and Humsavar for ZNF790 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10401199 -- 36,832,156(+) agaag(C/T)tacta intron-variant
rs10403010 -- 36,818,218(+) CCCTG(A/C)TATTC intron-variant, downstream-variant-500B, utr-variant-3-prime
rs10408174 -- 36,839,659(+) agtac(G/T)ggcat intron-variant, upstream-variant-2KB
rs10564276 -- 36,818,280(+) ATTCT(-/CTG)CTGCT intron-variant, downstream-variant-500B, cds-indel
rs10566332 -- 36,838,128(+) CACAC(-/AT)ACACA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZNF790 Gene

Variant ID Type Subtype PubMed ID
esv34384 CNV loss 17911159
esv3644272 CNV loss 21293372
nsv1064851 CNV loss 25217958
nsv458569 CNV loss 19166990
nsv469794 CNV loss 16826518
nsv521605 CNV loss 19592680
nsv579461 CNV gain 21841781
nsv579462 CNV loss 21841781
nsv817833 CNV loss 17921354

Variation tolerance for ZNF790 Gene

Residual Variation Intolerance Score: 91.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.70; 86.52% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF790 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF790

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF790 Gene

Disorders for ZNF790 Gene

Relevant External Links for ZNF790

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF790

No disorders were found for ZNF790 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF790 Gene

Publications for ZNF790 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. Genome-wide YFP fluorescence complementation screen identifies new regulators for telomere signaling in human cells. (PMID: 21044950) Lee O.H. … Songyang Z. (Mol. Cell Proteomics 2011) 3 64
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  5. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64

Products for ZNF790 Gene

Sources for ZNF790 Gene

Content
Loading form....