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Aliases for ZNF790 Gene

Aliases for ZNF790 Gene

  • Zinc Finger Protein 790 2 3

External Ids for ZNF790 Gene

Summaries for ZNF790 Gene

GeneCards Summary for ZNF790 Gene

ZNF790 (Zinc Finger Protein 790) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF529.

UniProtKB/Swiss-Prot for ZNF790 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF790 Gene

Genomics for ZNF790 Gene

Genomic Location for ZNF790 Gene

Start:
36,817,428 bp from pter
End:
36,850,787 bp from pter
Size:
33,360 bases
Orientation:
Minus strand

Genomic View for ZNF790 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF790 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF790 Gene

No data available for Regulatory Elements for ZNF790 Gene

Proteins for ZNF790 Gene

  • Protein details for ZNF790 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PG37-ZN790_HUMAN
    Recommended name:
    Zinc finger protein 790
    Protein Accession:
    Q6PG37
    Secondary Accessions:

    Protein attributes for ZNF790 Gene

    Size:
    636 amino acids
    Molecular mass:
    74571 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF790 Gene

Proteomics data for ZNF790 Gene at MOPED

Post-translational modifications for ZNF790 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF790 Gene

Domains for ZNF790 Gene

Gene Families for ZNF790 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF790 Gene

UniProtKB/Swiss-Prot:

ZN790_HUMAN
Domain:
  • Contains 1 KRAB domain.:
    • Q6PG37
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q6PG37
Similarity:
  • Contains 13 C2H2-type zinc fingers.:
    • Q6PG37
genes like me logo Genes that share domains with ZNF790: view

Function for ZNF790 Gene

Molecular function for ZNF790 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF790 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF790: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF790 Gene

Localization for ZNF790 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF790 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF790 Gene COMPARTMENTS Subcellular localization image for ZNF790 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF790 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF790: view

Pathways for ZNF790 Gene

SuperPathways for ZNF790 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF790: view

Pathways by source for ZNF790 Gene

2 Reactome pathways for ZNF790 Gene

Interacting Proteins for ZNF790 Gene

Gene Ontology (GO) - Biological Process for ZNF790 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with ZNF790: view

Transcripts for ZNF790 Gene

Unigene Clusters for ZNF790 Gene

Zinc finger protein 790:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF790 Gene

No ASD Table

Relevant External Links for ZNF790 Gene

GeneLoc Exon Structure for
ZNF790
ECgene alternative splicing isoforms for
ZNF790

Expression for ZNF790 Gene

mRNA expression in normal human tissues for ZNF790 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for ZNF790 Gene Hs.282067

genes like me logo Genes that share expressions with ZNF790: view

Orthologs for ZNF790 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF790 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 43 (a)
ManyToMany
ZNF790 36
  • 99.42 (n)
  • 99.53 (a)
dog
(Canis familiaris)
Mammalia ZNF790 36
  • 89.68 (n)
  • 84.68 (a)
ZNF790 37
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Zfp790 36
  • 64.58 (n)
  • 52.25 (a)
Zfp790 16
Zfp790 37
  • 41 (a)
OneToMany
Zfp940 37
  • 46 (a)
OneToMany
Species with no ortholog for ZNF790:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF790 Gene

ENSEMBL:
Gene Tree for ZNF790 (if available)
TreeFam:
Gene Tree for ZNF790 (if available)

Paralogs for ZNF790 Gene

Selected SIMAP similar genes for ZNF790 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with ZNF790: view

Variants for ZNF790 Gene

Sequence variations from dbSNP and Humsavar for ZNF790 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs485256 -- 36,848,064(+) tctca(A/G)gtatt intron-variant, upstream-variant-2KB
rs486221 -- 36,847,962(+) agaca(C/T)ctatc intron-variant, upstream-variant-2KB
rs542847 -- 36,848,254(+) tagaa(G/T)gttgg intron-variant, upstream-variant-2KB
rs562429 -- 36,846,037(+) ctcct(C/G)acctc intron-variant
rs1144539 -- 36,840,712(+) tcagg(A/C)ctttc intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZNF790 Gene

Variant ID Type Subtype PubMed ID
nsv469794 CNV Complex 16826518
esv34384 CNV Loss 17911159
nsv817833 CNV Loss 17921354
nsv911650 CNV Gain 21882294
nsv521605 CNV Loss 19592680
nsv911651 CNV Loss 21882294
nsv458569 CNV Loss 19166990

Relevant External Links for ZNF790 Gene

HapMap Linkage Disequilibrium report
ZNF790

Disorders for ZNF790 Gene

No disorders were found for ZNF790 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF790 Gene

Publications for ZNF790 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  4. Genome-wide YFP fluorescence complementation screen identifies new regulators for telomere signaling in human cells. (PMID: 21044950) Lee O.H. … Songyang Z. (Mol. Cell Proteomics 2011) 3
  5. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4

Products for ZNF790 Gene

  • antibodies-online peptides for ZNF790
  • antibodies-online antibodies for ZNF790
  • antibodies-online kits for ZNF790

Sources for ZNF790 Gene

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