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Aliases for ZNF788 Gene

Aliases for ZNF788 Gene

  • Zinc Finger Family Member 788 2 3

External Ids for ZNF788 Gene

Summaries for ZNF788 Gene

GeneCards Summary for ZNF788 Gene

ZNF788 (Zinc Finger Family Member 788) is a Protein Coding gene. An important paralog of this gene is ZNF709.

UniProtKB/Swiss-Prot for ZNF788 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF788 Gene

Genomics for ZNF788 Gene

Genomic Location for ZNF788 Gene

Start:
12,092,263 bp from pter
End:
12,137,235 bp from pter
Size:
44,973 bases
Orientation:
Plus strand

Genomic View for ZNF788 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF788 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF788 Gene

Regulatory Elements for ZNF788 Gene

Proteins for ZNF788 Gene

  • Protein details for ZNF788 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZQV5-ZN788_HUMAN
    Recommended name:
    Zinc finger protein 788
    Protein Accession:
    Q6ZQV5
    Secondary Accessions:
    • Q6ZRE4

    Protein attributes for ZNF788 Gene

    Size:
    615 amino acids
    Molecular mass:
    71992 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC87366.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ZNF788 Gene

Proteomics data for ZNF788 Gene at MOPED

Post-translational modifications for ZNF788 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF788 Gene

No data available for DME Specific Peptides for ZNF788 Gene

Domains for ZNF788 Gene

Gene Families for ZNF788 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF788 Gene

Suggested Antigen Peptide Sequences for ZNF788 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZQV5

UniProtKB/Swiss-Prot:

ZN788_HUMAN
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q6ZQV5
Similarity:
  • Contains 17 C2H2-type zinc fingers.:
    • Q6ZQV5
genes like me logo Genes that share domains with ZNF788: view

Function for ZNF788 Gene

Molecular function for ZNF788 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF788 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF788: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF788 Gene

Localization for ZNF788 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF788 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF788 Gene COMPARTMENTS Subcellular localization image for ZNF788 gene
Compartment Confidence
nucleus 4
cytosol 2
extracellular 1

Gene Ontology (GO) - Cellular Components for ZNF788 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IDA 16791210
genes like me logo Genes that share ontologies with ZNF788: view

Pathways for ZNF788 Gene

SuperPathways for ZNF788 Gene

No Data Available

Interacting Proteins for ZNF788 Gene

Gene Ontology (GO) - Biological Process for ZNF788 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF788: view

No data available for Pathways by source for ZNF788 Gene

Transcripts for ZNF788 Gene

mRNA/cDNA for ZNF788 Gene

Unigene Clusters for ZNF788 Gene

Zinc finger family member 788:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF788 Gene

No ASD Table

Relevant External Links for ZNF788 Gene

GeneLoc Exon Structure for
ZNF788
ECgene alternative splicing isoforms for
ZNF788

Expression for ZNF788 Gene

mRNA expression in normal human tissues for ZNF788 Gene

mRNA differential expression in normal tissues according to GTEx for ZNF788 Gene

This gene is overexpressed in Brain - Cerebellum (4.5) and Brain - Cerebellar Hemisphere (4.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ZNF788 Gene

SOURCE GeneReport for Unigene cluster for ZNF788 Gene Hs.127473

genes like me logo Genes that share expressions with ZNF788: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ZNF788 Gene

Orthologs for ZNF788 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF788 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 1 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm14308 36
  • 6 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 5 (a)
ManyToMany
-- 36
  • 6 (a)
ManyToMany
-- 36
  • 5 (a)
ManyToMany
-- 36
  • 6 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 2 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 2 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii CR388132.2 36
  • 2 (a)
ManyToMany
CT573234.2 36
  • 2 (a)
ManyToMany
Species with no ortholog for ZNF788:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF788 Gene

ENSEMBL:
Gene Tree for ZNF788 (if available)
TreeFam:
Gene Tree for ZNF788 (if available)

Paralogs for ZNF788 Gene

Selected SIMAP similar genes for ZNF788 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ZNF788: view

Variants for ZNF788 Gene

Sequence variations from dbSNP and Humsavar for ZNF788 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1866382 -- 12,111,566(+) TTCTG(C/G)GAAGA nc-transcript-variant
rs1975349 -- 12,112,046(+) CGAAA(C/T)GCTAT nc-transcript-variant
rs4268868 -- 12,110,050(+) CCAGA(A/C)AGCAC intron-variant
rs6511766 -- 12,104,047(+) agtta(A/G)ctgca intron-variant
rs7245408 -- 12,108,248(+) tgttg(C/T)cgggc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF788 Gene

Variant ID Type Subtype PubMed ID
nsv525966 CNV Gain 19592680
nsv911068 CNV Gain 21882294
nsv911069 CNV Loss 21882294
nsv833753 CNV Loss 17160897

Relevant External Links for ZNF788 Gene

HapMap Linkage Disequilibrium report
ZNF788

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF788 Gene

Disorders for ZNF788 Gene

No disorders were found for ZNF788 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF788 Gene

Publications for ZNF788 Gene

  1. Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins. (PMID: 16791210) Sigal A. … Alon U. (Nat. Methods 2006) 3
  2. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli E.T. … Goldstein D.B. (Eur. J. Hum. Genet. 2010) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4

Products for ZNF788 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNF788
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF788
    • Block miRNA regulation of ZNF788 using miScript Target Protectors

    Sources for ZNF788 Gene

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