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Aliases for ZNF788 Gene

Aliases for ZNF788 Gene

  • Zinc Finger Family Member 788 2 3 5

External Ids for ZNF788 Gene

Previous GeneCards Identifiers for ZNF788 Gene

  • GC19P012075
  • GC19P012076
  • GC19P012077
  • GC19P012084
  • GC19P012087
  • GC19P012089
  • GC19P012095
  • GC19P012097
  • GC19P012204
  • GC19P011778
  • GC19P012113
  • GC19P012120
  • GC19P012128
  • GC19P012135

Summaries for ZNF788 Gene

GeneCards Summary for ZNF788 Gene

ZNF788 (Zinc Finger Family Member 788) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF791.

UniProtKB/Swiss-Prot for ZNF788 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF788 Gene

Genomics for ZNF788 Gene

Regulatory Elements for ZNF788 Gene

Enhancers for ZNF788 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F012781 1.7 FANTOM5 ENCODE 33.8 +697.0 697035 16.0 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 ZNF136 CCDC130 ZNF564 ZNF442 ZNF844 ZNF44 WDR83OS ZNF799 TRMT1 ZNF625
GH19F011531 1.5 FANTOM5 Ensembl ENCODE 31.5 -559.8 -559825 1.6 PKNOX1 ATF1 ZFP64 ZNF493 FOS ZNF202 ZNF263 REST ZNF518A ZNF623 ZNF627 ZNF136 ZNF844 ZNF442 ZNF625 ZNF44 ZNF799 ZNF441 ZNF491 ZNF700
GH19F012983 1.8 FANTOM5 Ensembl ENCODE 23.3 +892.5 892480 3.5 HDGF PKNOX1 CREB3L1 ARNT MLX SIN3A ARID4B DMAP1 ZNF2 ZNF143 ZNF136 CCDC130 ZNF564 ZNF625 WDR83OS ZNF844 ZNF442 MRI1 ZNF799 ZNF44
GH19F012880 1.5 FANTOM5 ENCODE 27.7 +791.1 791086 5.7 HDGF PKNOX1 ARNT MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF136 TRMT1 ZNF625 ZNF844 ZNF44 ZNF442 CCDC130 ZNF791 DNASE2 ZNF763
GH19F011420 1.3 Ensembl ENCODE 31.5 -670.4 -670420 3.1 ATF1 PKNOX1 ZNF493 ZFP64 SIN3A DMAP1 ZNF48 ETS1 ZNF121 GLIS2 ZNF627 ZNF136 ZNF442 ZNF844 ZNF625 ZNF44 ZNF799 ZNF763 ZNF441 ZNF491
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF788 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF788 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001417930 337 1601 CTCF DRAP1 TBP PKNOX1 SAP130 UBTF ZBTB40 RAD21 RARA FOXK2

Genomic Location for ZNF788 Gene

Chromosome:
19
Start:
12,092,263 bp from pter
End:
12,137,235 bp from pter
Size:
44,973 bases
Orientation:
Plus strand

Genomic View for ZNF788 Gene

Genes around ZNF788 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF788 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF788 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF788 Gene

Proteins for ZNF788 Gene

  • Protein details for ZNF788 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZQV5-ZN788_HUMAN
    Recommended name:
    Zinc finger protein 788
    Protein Accession:
    Q6ZQV5
    Secondary Accessions:
    • Q6ZRE4

    Protein attributes for ZNF788 Gene

    Size:
    615 amino acids
    Molecular mass:
    71992 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC87366.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ZNF788 Gene

Post-translational modifications for ZNF788 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF788 Gene

No data available for DME Specific Peptides for ZNF788 Gene

Domains & Families for ZNF788 Gene

Gene Families for ZNF788 Gene

Protein Domains for ZNF788 Gene

Suggested Antigen Peptide Sequences for ZNF788 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZQV5

UniProtKB/Swiss-Prot:

ZN788_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 17 C2H2-type zinc fingers.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 17 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF788: view

Function for ZNF788 Gene

Molecular function for ZNF788 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF788 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF788: view
genes like me logo Genes that share phenotypes with ZNF788: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF788 Gene

Localization for ZNF788 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF788 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF788 gene
Compartment Confidence
nucleus 5
cytosol 2
extracellular 1

Gene Ontology (GO) - Cellular Components for ZNF788 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IDA 16791210
genes like me logo Genes that share ontologies with ZNF788: view

Pathways & Interactions for ZNF788 Gene

SuperPathways for ZNF788 Gene

No Data Available

Interacting Proteins for ZNF788 Gene

Gene Ontology (GO) - Biological Process for ZNF788 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF788: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF788 Gene

Transcripts for ZNF788 Gene

mRNA/cDNA for ZNF788 Gene

Unigene Clusters for ZNF788 Gene

Zinc finger family member 788:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF788 Gene

No ASD Table

Relevant External Links for ZNF788 Gene

GeneLoc Exon Structure for
ZNF788
ECgene alternative splicing isoforms for
ZNF788

Expression for ZNF788 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ZNF788 Gene

mRNA differential expression in normal tissues according to GTEx for ZNF788 Gene

This gene is overexpressed in Brain - Cerebellum (x4.5) and Brain - Cerebellar Hemisphere (x4.3).

Protein differential expression in normal tissues from HIPED for ZNF788 Gene

This gene is overexpressed in Pancreatic juice (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF788 Gene



Protein tissue co-expression partners for ZNF788 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF788 Gene:

ZNF788

SOURCE GeneReport for Unigene cluster for ZNF788 Gene:

Hs.127473
genes like me logo Genes that share expression patterns with ZNF788: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for ZNF788 Gene

Orthologs for ZNF788 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF788 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 6 (a)
ManyToMany
-- 35
  • 6 (a)
ManyToMany
-- 35
  • 5 (a)
ManyToMany
-- 35
  • 5 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm14308 35
  • 6 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 2 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 1 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 2 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii CR388132.2 35
  • 2 (a)
ManyToMany
CT573234.2 35
  • 2 (a)
ManyToMany
Species where no ortholog for ZNF788 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF788 Gene

ENSEMBL:
Gene Tree for ZNF788 (if available)
TreeFam:
Gene Tree for ZNF788 (if available)

Paralogs for ZNF788 Gene

(441) SIMAP similar genes for ZNF788 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ZNF788: view

Variants for ZNF788 Gene

Sequence variations from dbSNP and Humsavar for ZNF788 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10401402 -- 12,093,951(+) AGAAA(A/C)TGTCA intron-variant
rs10401989 -- 12,094,188(+) aggtg(C/T)gcgct intron-variant
rs10403922 -- 12,111,969(+) CTATG(C/T)GTGTA nc-transcript-variant
rs10406299 -- 12,091,333(+) GTGTG(A/C)GAGAA upstream-variant-2KB
rs10406320 -- 12,091,371(+) GTTTA(C/T)GAAGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZNF788 Gene

Variant ID Type Subtype PubMed ID
esv3643694 CNV loss 21293372
esv3893164 CNV loss 25118596
nsv525966 CNV gain 19592680
nsv578619 CNV loss 21841781
nsv833753 CNV loss 17160897
nsv961177 CNV duplication 23825009

Variation tolerance for ZNF788 Gene

Gene Damage Index Score: 7.99; 84.11% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF788 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF788

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF788 Gene

Disorders for ZNF788 Gene

Relevant External Links for ZNF788

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF788

No disorders were found for ZNF788 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF788 Gene

Publications for ZNF788 Gene

  1. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli E.T. … Goldstein D.B. (Eur. J. Hum. Genet. 2010) 3 64
  2. Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins. (PMID: 16791210) Sigal A. … Alon U. (Nat. Methods 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64

Products for ZNF788 Gene

Sources for ZNF788 Gene

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