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Aliases for ZNF788 Gene

Aliases for ZNF788 Gene

  • Zinc Finger Family Member 788 2 3 5

External Ids for ZNF788 Gene

Previous GeneCards Identifiers for ZNF788 Gene

  • GC19P012075
  • GC19P012076
  • GC19P012077
  • GC19P012084
  • GC19P012087
  • GC19P012089
  • GC19P012095
  • GC19P012097
  • GC19P012204
  • GC19P011778
  • GC19P012113
  • GC19P012120
  • GC19P012128
  • GC19P012135
  • GC19P012142

Summaries for ZNF788 Gene

GeneCards Summary for ZNF788 Gene

ZNF788 (Zinc Finger Family Member 788) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF14.

UniProtKB/Swiss-Prot for ZNF788 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF788 Gene

Genomics for ZNF788 Gene

Regulatory Elements for ZNF788 Gene

Enhancers for ZNF788 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G012983 2 FANTOM5 Ensembl ENCODE dbSUPER 50.6 +892.5 892540 3.2 HDGF FOXA2 PKNOX1 MLX CREB3L1 ARNT AGO1 SIN3A ARID4B DMAP1 ZNF625 ZNF136 ZNF844 ZNF442 ZNF788 ENSG00000242615 ZNF709 ZNF799 ZNF564 CCDC130
GH19G012781 1.9 FANTOM5 ENCODE dbSUPER 37.4 +697.0 697035 16.0 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 ZNF136 ZNF844 CCDC130 ZNF564 ZNF442 ZNF625 MRI1 ZNF44 C19orf43 WDR83OS
GH19G013011 2 FANTOM5 Ensembl ENCODE dbSUPER 27.6 +927.9 927932 17.2 HDGF PKNOX1 FOXA2 CREB3L1 MLX ARNT AGO1 SIN3A ARID4B FEZF1 TRMT1 ZNF709 ZNF788 ZNF625 ZNF136 NFIX CCDC130 ZNF564 ZNF791 DAND5
GH19G011531 1.5 FANTOM5 Ensembl ENCODE 35.1 -559.8 -559825 1.6 PKNOX1 ATF1 ZNF493 ZFP64 FOS ZNF263 ZNF202 REST ZNF623 ZNF518A ZNF844 ZNF136 ZNF627 ZNF442 ZNF625 ZNF441 ZNF491 ZNF788 HNRNPA1P10 ZNF709
GH19G011420 1.3 Ensembl ENCODE 35.1 -670.6 -670571 2.8 PKNOX1 ZFP64 SIN3A DMAP1 FOS SP3 REST ZNF610 SMARCA4 GLIS1 ZNF136 ZNF844 ZNF627 ZNF442 ZNF625 ZNF441 ZNF491 ZNF788 HNRNPA1P10 ZNF44
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF788 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF788 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000107245 437 1401 HDAC1 TBP PKNOX1 ZBTB40 FOS IKZF2 NFYA SMAD5 GTF2B NFYC

Genomic Location for ZNF788 Gene

Chromosome:
19
Start:
12,092,263 bp from pter
End:
12,137,235 bp from pter
Size:
44,973 bases
Orientation:
Plus strand

Genomic View for ZNF788 Gene

Genes around ZNF788 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF788 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF788 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF788 Gene

Proteins for ZNF788 Gene

  • Protein details for ZNF788 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZQV5-ZN788_HUMAN
    Recommended name:
    Zinc finger protein 788
    Protein Accession:
    Q6ZQV5
    Secondary Accessions:
    • Q6ZRE4

    Protein attributes for ZNF788 Gene

    Size:
    615 amino acids
    Molecular mass:
    71992 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC87366.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ZNF788 Gene

Post-translational modifications for ZNF788 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF788 Gene

No data available for DME Specific Peptides for ZNF788 Gene

Domains & Families for ZNF788 Gene

Gene Families for ZNF788 Gene

Protein Domains for ZNF788 Gene

Suggested Antigen Peptide Sequences for ZNF788 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZQV5

UniProtKB/Swiss-Prot:

ZN788_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with ZNF788: view

Function for ZNF788 Gene

Molecular function for ZNF788 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF788 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF788: view
genes like me logo Genes that share phenotypes with ZNF788: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF788 Gene

Localization for ZNF788 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF788 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ZNF788 gene
Compartment Confidence
nucleus 5
cytosol 2
extracellular 1

Gene Ontology (GO) - Cellular Components for ZNF788 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IDA 16791210
genes like me logo Genes that share ontologies with ZNF788: view

Pathways & Interactions for ZNF788 Gene

SuperPathways for ZNF788 Gene

No Data Available

Interacting Proteins for ZNF788 Gene

Gene Ontology (GO) - Biological Process for ZNF788 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF788: view

No data available for Pathways by source and SIGNOR curated interactions for ZNF788 Gene

Drugs & Compounds for ZNF788 Gene

No Compound Related Data Available

Transcripts for ZNF788 Gene

Unigene Clusters for ZNF788 Gene

Zinc finger family member 788:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF788 Gene

No ASD Table

Relevant External Links for ZNF788 Gene

GeneLoc Exon Structure for
ZNF788
ECgene alternative splicing isoforms for
ZNF788

Expression for ZNF788 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF788 Gene

mRNA differential expression in normal tissues according to GTEx for ZNF788 Gene

This gene is overexpressed in Brain - Cerebellum (x4.5) and Brain - Cerebellar Hemisphere (x4.3).

Protein differential expression in normal tissues from HIPED for ZNF788 Gene

This gene is overexpressed in Pancreatic juice (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF788 Gene



Protein tissue co-expression partners for ZNF788 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF788 Gene:

ZNF788

SOURCE GeneReport for Unigene cluster for ZNF788 Gene:

Hs.127473

Evidence on tissue expression from TISSUES for ZNF788 Gene

  • Heart(2.5)
genes like me logo Genes that share expression patterns with ZNF788: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF788 Gene

Orthologs for ZNF788 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF788 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 6 (a)
ManyToMany
-- 35
  • 6 (a)
ManyToMany
-- 35
  • 5 (a)
ManyToMany
-- 35
  • 5 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm14308 35
  • 6 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 2 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 1 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 2 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii CR388132.2 35
  • 2 (a)
ManyToMany
CT573234.2 35
  • 2 (a)
ManyToMany
Species where no ortholog for ZNF788 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF788 Gene

ENSEMBL:
Gene Tree for ZNF788 (if available)
TreeFam:
Gene Tree for ZNF788 (if available)

Paralogs for ZNF788 Gene

(441) SIMAP similar genes for ZNF788 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ZNF788: view

Variants for ZNF788 Gene

Sequence variations from dbSNP and Humsavar for ZNF788 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000117960 -- 12,100,230(+) ATTCC(A/G)CATAG intron-variant
rs1000466867 -- 12,114,405(+) TTTTT(A/T)ATTTC nc-transcript-variant, upstream-variant-2KB
rs1000503675 -- 12,099,280(+) AAGCT(A/C)AACAT intron-variant
rs1000661826 -- 12,092,291(+) GCTGC(A/G)AGCCC nc-transcript-variant
rs1000673783 -- 12,092,807(+) CTCCT(C/T)TTAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF788 Gene

Variant ID Type Subtype PubMed ID
esv3643694 CNV loss 21293372
esv3893164 CNV loss 25118596
nsv525966 CNV gain 19592680
nsv578619 CNV loss 21841781
nsv833753 CNV loss 17160897
nsv961177 CNV duplication 23825009

Variation tolerance for ZNF788 Gene

Gene Damage Index Score: 7.99; 84.11% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF788 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF788

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF788 Gene

Disorders for ZNF788 Gene

Relevant External Links for ZNF788

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF788

No disorders were found for ZNF788 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF788 Gene

Publications for ZNF788 Gene

  1. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli E.T. … Goldstein D.B. (Eur. J. Hum. Genet. 2010) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins. (PMID: 16791210) Sigal A. … Alon U. (Nat. Methods 2006) 3 64
  4. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  5. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64

Products for ZNF788 Gene

Sources for ZNF788 Gene

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