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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZNF702P Gene

pseudogene   GIFtS: 33
GCID: GC19M053471

zinc finger protein 702, pseudogene

(Previous names: zinc finger protein 702, zinc finger protein 702 pseudogene,...)
(Previous symbol: ZNF702)
  Search for ZNF702P
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Zinc Finger Protein 702, Pseudogene1 2
ZNF7021 2 3
FLJ129851
Zinc Finger Protein 7021
Zinc Finger Protein 702 (Pseudogene)1
Zinc Finger Protein 702 Pseudogene1

External Ids:    HGNC: 257751   Entrez Gene: 799862   Ensembl: ENSG000002427797   UniProtKB: Q9H9633   
ORGUL members:         
NONCODE:n383551    

Export aliases for ZNF702P gene to outside databases

Previous GC identifers: GC19M058166 GC19M049797


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ZN702_HUMAN, Q9H963
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.1  NT_011109.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZNF702P gene promoter:
         Sox5   FOXJ2 (long isoform)   FOXJ2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for ZNF702P

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF702P


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.41   Ensembl cytogenetic band:  19q13.41   HGNC cytogenetic band: 19q13.41

ZNF702P Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF702P gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M053471:  view genomic region     (about GC identifiers)

Start:
53,471,504 bp from pter      End:
53,496,784 bp from pter
Size:
25,281 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ZN702_HUMAN, Q9H963 (See protein sequence)
Recommended Name: Putative zinc finger protein 702  
Size: 129 amino acids; 15019 Da
Subcellular location: Nucleus (Potential)
Caution: Could be the product of a pseudogene
Secondary accessions: Q05BW1

Explore the universe of human proteins at neXtProt for ZNF702P: NX_Q9H963

ZNF702P Protein expression data from MOPED and PaxDb:    About this image 
ZNF702P Protein Expression
Reactome Protein details: Q9H963
Human Recombinant Protein Products for ZNF702P: 

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IEA--

ZNF702P for ontologies           About GeneDecksing



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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ZNF702P for domains           About GeneDecksing

3 InterPro domains/families:
 IPR015880 Znf_C2H2-like
 IPR013087 Znf_C2H2/integrase_DNA-bd
 IPR007087 Znf_C2H2

Graphical View of Domain Structure for InterPro Entry Q9H963

ProtoNet protein and cluster: Q9H963

UniProtKB/Swiss-Prot: ZN702_HUMAN, Q9H963
Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
Similarity: Contains 3 C2H2-type zinc fingers


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: ZN702_HUMAN, Q9H963
Function: May be involved in transcriptional regulation

     Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003677DNA binding IEA--
GO:0008270zinc ion binding IEA--
     
ZNF702P for ontologies           About GeneDecksing


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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways  About this table 
See pathways by source

Super-pathwaycontained gene-specific pathways
1Generic Transcription Pathway
Generic Transcription Pathway1.00
Gene Expression0.46

Pathway sources
See GeneCards unified pathways
Show all pathways


2        Reactome Pathways for ZNF702P
    Generic Transcription Pathway
Gene Expression



ZNF702P for pathways           About GeneDecksing

Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNF702P

Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006351transcription, DNA-dependent IEA--
GO:0006355regulation of transcription, DNA-dependent IEA--

ZNF702P for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
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Browse Tocris compounds for ZNF702P
Search CenterWatch for drugs/clinical trials and news about ZNF702P 

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for ZNF702P gene: 
NM_024924.3  

Unigene Cluster for ZNF702P:

Zinc finger protein 702, pseudogene
Hs.714428  [show with all ESTs]
Unigene Representative Sequence: BC032590
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000270443(uc002qan.4) ENST00000434269

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Inhib. RNA
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Clone
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Additional cDNA sequence: 

AK023047.1 AK092593.1 AL832505.1 BC032590.1 NR_003578.1 

8 DOTS entries:

DT.205612  DT.101974377  DT.92416069  DT.121461807  DT.121461834  DT.121462239  DT.86837062  DT.99936345 

21 AceView cDNA sequences:

BF858099 AK092593 AA004958 AK023047 BC032590 NM_024924 AI368228 AI683930 
AA005028 AL832505 N91374 BF681341 BX488020 BU935201 BU521709 BU676500 
CB270445 AF026100 BE161730 BE161731 W20016 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

ZNF702P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
ZNF702P Expression
About this image
See ZNF702P Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for ZNF702P

SOURCE GeneReport for Unigene cluster: Hs.714428
    SABiosciences Custom PCR Arrays for ZNF702P

Primer
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QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNF702P
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF702P

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
  --

ENSEMBL Gene Tree for ZNF702P (if available)
TreeFam Gene Tree for ZNF702P (if available) 

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/639 NCBI SNPs in ZNF702P are shown (see all 639    About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 19 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1908235721,2
--53471006(+) TTTATA/TTTGGT 1 -- int10--------
rs1835379511,2
--53471019(+) AAAAAC/GTGTGA 1 -- int10--------
rs126088951,2
C,F,A,H--53471042(+) ATTTTT/CCCATA 1 -- int111Minor allele frequency- C:0.28NS EA WA NA 788
rs1499651311,2
--53471062(+) TTTCCA/GTGAGC 1 -- int10--------
rs1448854851,2
--53471098(+) AACTGG/TATTCA 1 -- int10--------
rs1408418671,2
--53471108(+) AAGAGA/GATATA 1 -- int10--------
rs1886374241,2
--53471129(+) GTAGAC/TATGCA 1 -- int10--------
rs1446698801,2
--53471139(+) AAGTGA/CCATTT 1 -- int10--------
rs1465137371,2
--53471254(+) AAATC-/ATTTAT
        
ATTTC
1 -- int10--------
rs751297391,2
C,F--53471321(+) AATTTA/CCCTCA 1 -- int15Minor allele frequency- C:0.04WA CSA NA EA 362

HapMap Linkage Disequilibrium report for ZNF702P (53471504 - 53496784 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 6 variations for ZNF702P
     6 CNVs: 3197 9311 30917 4087 53157 10565

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for ZNF702P gene integrated from 9 sources:
(articles sorted by number of sources associating them with ZNF702P)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
  2. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (2004)
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 79986 HGNC: 25775 AceView: FLJ12985 Ensembl:ENSG00000242779 euGenes: HUgn79986
ECgene: ZNF702P H-InvDB: ZNF702P

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for ZNF702P Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for ZNF702P gene:
Search GeneIP for patents involving ZNF702P

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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About This Section

 
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 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat ZNF702P
 inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for ZNF702P
Sirion Biotech Customized:
 stable knockdown cell line services for ZNF702P
 inducible knockdown cell line services for ZNF702P
 design and validation of potent shRNA sequences against ZNF702P
 adenovirus for potent knockdown of ZNF702P
 adenovirus for overexpression of ZNF702P
 stable overexpressing cell line services for ZNF702P
 inducible overexpressing cell line services for ZNF702P
       
GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 13 May 2013

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VWF
(GIFTS: 73)
von Willebrand factor
GIFtS Group
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