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ZNF687 Gene

protein-coding GIFtS: 50
GCID: GC01P151254

Zinc Finger Protein 687

See related disease
at

MalaCards

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
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Aliases
Zinc Finger Protein 687¹ ²
KIAA1441³ ⁵

External Ids:	HGNC: 29277¹	Entrez Gene: 57592²	Ensembl: ENSG00000143373⁷	OMIM: 610568⁵	UniProtKB: Q8N1G0³

Export aliases for ZNF687 gene to outside databases

Previous GC identifers: GC01P148069 GC01P149520 GC01P122632

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF687 Gene:

ZNF687 (zinc finger protein 687) is a protein-coding gene. Diseases associated with ZNF687 include brain cancer. An important paralog of this gene is ZNF532.

UniProtKB/Swiss-Prot: ZN687_HUMAN, Q8N1G0

Function: May be involved in transcriptional regulation

Gene Wiki entry for ZNF687 Gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:

NC_000001.11 NT_004487.20 NC_018912.2

Regulatory elements:

Regulatory transcription factor binding sites in the ZNF687 gene promoter:
E2F-4 E2F-3a E2F-5 Spz1 MyoD E2F-2 MZF-1 E2F E2F-1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: ZNF687 promoter sequence

Search Chromatin IP Primers for ZNF687

Epigenetics:

DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF687

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q21.3 Ensembl cytogenetic band: 1q21.3 HGNC cytogenetic band: 1q21.2

ZNF687 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF687 gene location

GeneLoc information about chromosome 1 GeneLoc Exon Structure

GeneLoc location for GC01P151254: view genomic region (about GC identifiers)

Start:	151,254,094 bp from pter	End:	151,264,656 bp from pter
Size:	10,563 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, ²neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: ZN687_HUMAN, Q8N1G0 (See protein sequence)

Recommended Name: Zinc finger protein 687

Size: 1237 amino acids; 129529 Da

Sequence caution: Sequence=BAA92679.1; Type=Erroneous initiation; Sequence=BAB14406.1; Type=Erroneous initiation;

Sequence=CAH18162.1; Type=Frameshift; Positions=1062;

Secondary accessions: D3DV17 Q68DQ8 Q9H937 Q9P2A7

Alternative splicing: 2 isoforms: Q8N1G0-1 Q8N1G0-2 (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ZNF687: NX_Q8N1G0

Explore proteomics data for ZNF687 at MOPED

Post-translational modifications:

Modification sites at neXtProt

Modification sites at PhosphoSitePlus

See ZNF687 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_065883.1

ENSEMBL proteins:

ENSP00000395261 ENSP00000336620 ENSP00000415286 ENSP00000319829 ENSP00000398821

ENSP00000416942 ENSP00000357874

ZNF687 Human Recombinant Protein Products:

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	Cloud-Clone Corp. ELISAs for ZNF687 Cloud-Clone Corp. CLIAs for ZNF687

(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro protein domains:

IPR015880 Znf_C2H2-like

IPR007087 Znf_C2H2

Graphical View of Domain Structure for InterPro Entry Q8N1G0

ProtoNet protein and cluster: Q8N1G0

UniProtKB/Swiss-Prot: ZN687_HUMAN, Q8N1G0

Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family

Similarity: Contains 10 C2H2-type zinc fingers

ZNF687 for domains About GeneDecksing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

UniProtKB/Swiss-Prot Summary: ZN687_HUMAN, Q8N1G0

Function: May be involved in transcriptional regulation

Gene Ontology (GO): 2 molecular function terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003677	DNA binding	IEA	--
GO:0046872	metal ion binding	IEA	--

ZNF687 for ontologies About GeneDecksing

Animal Models:

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miRNA Products:		miRTarBase miRNAs that target ZNF687: hsa-mir-92a-3p (MIRT049844), hsa-mir-615-3p (MIRT040423), hsa-mir-1229-3p (MIRT036351), hsa-let-7b-5p (MIRT051985), hsa-mir-30c-5p (MIRT047954), hsa-mir-877-3p (MIRT036906)

		Block miRNA regulation of human, mouse, rat ZNF687 using miScript Target Protectors
		Selected qRT-PCR Assays for microRNAs that regulate ZNF687 (see all 24):
		hsa-miR-4328 hsa-miR-509-5p hsa-miR-488 hsa-miR-1205 hsa-miR-29b-1* hsa-miR-103a hsa-miR-124 hsa-miR-1184

		SwitchGear 3'UTR luciferase reporter plasmid: ZNF687 3' UTR sequence

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Gene Editing
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In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF687

(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot

ZN687_HUMAN, Q8N1G0: Nucleus (Probable)

Subcellular locations from COMPARTMENTS:

Compartment	Confidence
nucleus	4

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Gene Ontology (GO): 2 cellular component terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	IDA	--
GO:0005730	nucleolus	IDA	--

ZNF687 for ontologies About GeneDecksing

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Custom Pathway & Disease-focused RT² Profiler PCR Arrays for ZNF687
Interactions:

Search GeneGlobe Interaction Network for ZNF687

STRING Interaction Network Preview (showing 5 interactants - click image to see 7)

Selected Interacting proteins for ZNF687 (Q8N1G0³ ENSP00000319829⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 7)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
INTS5	Q6P9B9³, ENSP00000327889⁴	I2D: score=1 STRING: ENSP00000327889
RNF2	Q99496³, ENSP00000356480⁴	I2D: score=1 STRING: ENSP00000356480
SUMO1	P63165³, ENSP00000376076⁴	I2D: score=1 STRING: ENSP00000376076
INTS1	Q8N201³, ENSP00000385722⁴	I2D: score=1 STRING: ENSP00000385722
INTS3	Q68E01³, ENSP00000318641⁴	I2D: score=1 STRING: ENSP00000318641

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Gene Ontology (GO): 2 biological process terms: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006351	transcription, DNA-templated	IEA	--
GO:0006355	regulation of transcription, DNA-templated	IEA	--

ZNF687 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse compounds at ApexBio

Browse Tocris compounds for ZNF687 (ZN687)

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for ZNF687 gene:

NM_020832.1

Unigene Cluster for ZNF687:

Zinc finger protein 687

Hs.186756 [show with all ESTs]

Unigene Representative Sequence: AB037862

8 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000443959 ENST00000336715(uc001exq.3) ENST00000449313(uc001exp.1)

ENST00000324048(uc009wmo.3) ENST00000426871 ENST00000459919 ENST00000436614

ENST00000368879(uc009wmp.3)

miRNA Products:		Block miRNA regulation of human, mouse, rat ZNF687 using miScript Target Protectors
		Selected qRT-PCR Assays for microRNAs that regulate ZNF687 (see all 24):
		hsa-miR-4328 hsa-miR-509-5p hsa-miR-488 hsa-miR-1205 hsa-miR-29b-1* hsa-miR-103a hsa-miR-124 hsa-miR-1184

		SwitchGear 3'UTR luciferase reporter plasmid: ZNF687 3' UTR sequence

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		QuantiFast Probe-based Assays in human, mouse, rat ZNF687

Additional mRNA sequence:

AB037862.1 AK023105.1 BC020245.1 BC032463.1 CR749307.1

8 DOTS entries:

DT.95164401 DT.91732673 DT.121443513 DT.97848306 DT.402459 DT.102832727 DT.121443529 DT.99943313

Selected AceView cDNA sequences (see all 126):

BM721303 BQ212546 BC032463 BU729994 CA488781 BM677037 BQ217249 AI745167

W84724 BQ231483 AL603613 NM_020832 BI753085 BM718164 AK023105 CD366120

BF510047 BI753953 BM704083 BM671840 CB305718 AI951587 AB037862 BM727825

GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for ZNF687 About this scheme

ExUns:	1	^	2	^	3	^	4	^	5	^	6	^	7	^	8a	·	8b	^	9
SP1:															-
SP2:

ECgene alternative splicing isoforms for ZNF687

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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ZNF687 expression in normal human tissues (normalized intensities) ZNF687 embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: GACTGGAACT

About this image

ZNF687 expression in embryonic tissues and stem cells About this table

Data from LifeMap, the Embryonic Development and Stem Cells Database


Heart (Cardiovascular System) fully expand to see all 2 entries
Atrioventricular Canal Cells Atrioventricular Canal
Outflow Tract

ZNF687 Protein expression data from MOPED¹, PaxDb² and MaxQB³:

About this image

ZNF687 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.186756

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In Situ
Assay Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF687

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for ZNF687 gene from Selected species (see all 12) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Zfp687^{1 , 5}	zinc finger protein 687^{1, 5}	84.93(n)¹ 85.88(a)¹		3 (40.74 cM)⁵ 78266¹ NM_030074.2¹ NP_084350.1¹ 95006590⁵
chicken (Gallus gallus)	Aves	ZNF687¹	zinc finger protein 687	65.04(n) 64.75(a)		429831 XM_427387.4 XP_427387.4
lizard (Anolis carolinensis)	Reptilia	ZNF687⁶	zinc finger protein 687	49(a)	1 ↔ 1	GL343616.1(374779-404583)
tropical clawed frog (Xenopus tropicalis)	Amphibia	znf687¹	zinc finger protein 687	65.66(n) 65.04(a)		100036627 NM_001097186.1 NP_001090655.1
zebrafish (Danio rerio)	Actinopterygii	Dr.16948²	Transcribed sequence with weak similarity to protein more	75.28(n)		BI982637.1

ENSEMBL Gene Tree for ZNF687 (if available)
TreeFam Gene Tree for ZNF687 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for ZNF687 gene

ZNF532² ZNF592²

1 SIMAP similar gene for ZNF687 using alignment to 5 protein entries: ZN687_HUMAN (see all proteins):

ZNF532

ZNF687 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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SNP ID	Valid	Clinical significance	Chr 1 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs185683004^1,2	C	--	151256788(+)	`GGAGGA/GGTGGA`	1	--	int¹		0	--	--	--	--
rs72708501^1,2	C	--	151256990(+)	`AATTTC/TCTTGA`	1	--	int¹		0	--	--	--	--
rs190400574^1,2		--	151257072(+)	`CTGCAC/TGACCC`	1	--	int¹		0	--	--	--	--
rs182202026^1,2		--	151257092(+)	`GCCTCC/TGACCC`	1	--	int¹		0	--	--	--	--
rs140417989^1,2		--	151257102(+)	`CCAGCC/TCTAGA`	1	--	int¹		0	--	--	--	--
rs111737413^1,2	F	--	151257135(+)	`AGTTCC/TTCCTT`	1	--	int¹		1		CSA	2
rs191867502^1,2		--	151257147(+)	`ACCTGA/GCATGT`	1	--	int¹		0	--	--	--	--
rs184109794^1,2	C	--	151257183(+)	`AAATCA/GTATTC`	1	--	int¹		0	--	--	--	--
rs12754257^1,2		--	151257278(+)	`CTTGtC/Tttttt`	1	--	int¹ trp³		0	--	--	--	--
rs74125915^1,2	C,F	--	151257551(+)	`CGGCCA/TTTTGT`	1	--	int¹		2		WA	120

HapMap Linkage Disequilibrium report for ZNF687 (151254094 - 151264656 bp)

Structural Variations
Database of Genomic Variants (DGV) 3 variations for ZNF687: About this table

Variant ID	Type	Subtype	PubMed ID
dgv2n68	CNV	Loss	17160897
esv34461	CNV	Gain	17911159
nsv522840	CNV	Gain	19592680

Site Specific Mutation Identification with PCR Assays

SeqTarget long-range PCR primers for resequencing ZNF687

DNA2.0 Custom Variant and Variant Library Synthesis for ZNF687

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 610568 OMIM disorders: --

1 disease for ZNF687: About MalaCards

brain cancer

ZNF687 for disorders About GeneDecksing

Export disorders for ZNF687 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for ZNF687 gene, integrated from 10 sources (see all 27):
(articles sorted by number of sources associating them with ZNF687)

Utopia: connect your pdf to the dynamic
world of online information

Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10718198)^{1, 2, 3} Nagase T.... Ohara O. (DNA Res. 2000)
The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)^{1, 2} Gregory S.G.... Bentley D.R. (Nature 2006)
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)^{1, 2} Olsen J.V....Mann M. (Cell 2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S.... Malek J. (Genome Res. 2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (Nat. Genet. 2004)
Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS. (PubMed id 23455922)¹ Varjosalo M....Superti-Furga G. (Nat. Methods 2013)
The SOX2-interactome in brain cancer cells identifies the requirement of MSI2 and USP9X for the growth of brain tumor cells. (PubMed id 23667531)¹ Cox J.L....Rizzino A. (PLoS ONE 2013)
The functional interactome landscape of the human histone deacetylase family. (PubMed id 23752268)¹ Joshi P....Cristea I.M. (Mol. Syst. Biol. 2013)
A census of human soluble protein complexes. (PubMed id 22939629)¹ Havugimana P.C....Emili A. (Cell 2012)
The global gene-expression profiles of U-937 human macrophages treated with Tat peptide and Tat-FITC conjugate. (PubMed id 22632162)¹ Lin C.W....Jan M.S. (J Drug Target 2012)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 57592	HGNC: 29277	AceView: KIAA1441	Ensembl:ENSG00000143373	euGenes: HUgn57592
ECgene: ZNF687	H-InvDB: ZNF687

(According to HUGE)
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HUGE: KIAA1441

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for ZNF687	Pharmacogenomics, SNPs, Pathways

Intellectual Property for ZNF687 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for ZNF687 gene:
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(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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ZNF687 Gene

Zinc Finger Protein 687

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ZNF687 Gene

Zinc Finger Protein 687

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