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ZNF687 Gene

protein-coding   GIFtS: 50
GCID: GC01P151254

Zinc Finger Protein 687

  Search for ZNF687
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 6871 2
KIAA14413 5

External Ids:    HGNC: 292771   Entrez Gene: 575922   Ensembl: ENSG000001433737   OMIM: 6105685   UniProtKB: Q8N1G03   

Export aliases for ZNF687 gene to outside databases

Previous GC identifers: GC01P148069 GC01P149520 GC01P122632


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF687 Gene:
ZNF687 (zinc finger protein 687) is a protein-coding gene. An important paralog of this gene is ZNF532.

UniProtKB/Swiss-Prot: ZN687_HUMAN, Q8N1G0
Function: May be involved in transcriptional regulation

Gene Wiki entry for ZNF687 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000001.10  NT_004487.20  NC_018912.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF687 gene promoter:
         E2F-4   E2F-3a   E2F-5   Spz1   MyoD   E2F-2   MZF-1   E2F   E2F-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF687 promoter sequence
   Search Chromatin IP Primers for ZNF687

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF687


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q21.3   Ensembl cytogenetic band:  1q21.3   HGNC cytogenetic band: 1q21.2

ZNF687 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF687 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P151254:  view genomic region     (about GC identifiers)

Start:
151,254,094 bp from pter      End:
151,264,656 bp from pter
Size:
10,563 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: ZN687_HUMAN, Q8N1G0 (See protein sequence)
Recommended Name: Zinc finger protein 687  
Size: 1237 amino acids; 129529 Da
Sequence caution: Sequence=BAA92679.1; Type=Erroneous initiation; Sequence=BAB14406.1; Type=Erroneous initiation;
Sequence=CAH18162.1; Type=Frameshift; Positions=1062;
Secondary accessions: D3DV17 Q68DQ8 Q9H937 Q9P2A7
Alternative splicing: 2 isoforms:  Q8N1G0-1   Q8N1G0-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ZNF687: NX_Q8N1G0

Explore proteomics data for ZNF687 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZNF687 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_065883.1  
    ENSEMBL proteins: 
     ENSP00000395261   ENSP00000336620   ENSP00000415286   ENSP00000319829   ENSP00000398821  
     ENSP00000416942   ENSP00000357874  

    ZNF687 Human Recombinant Protein Products:

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q8N1G0

    ProtoNet protein and cluster: Q8N1G0

    UniProtKB/Swiss-Prot: ZN687_HUMAN, Q8N1G0
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 10 C2H2-type zinc fingers


    Find genes that share domains with ZNF687           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN687_HUMAN, Q8N1G0
    Function: May be involved in transcriptional regulation

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0046872metal ion binding IEA--
         
    Find genes that share ontologies with ZNF687           About GenesLikeMe


    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for ZNF687
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    miRNA
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    miRTarBase miRNAs that target ZNF687:
    hsa-mir-92a-3p (MIRT049844), hsa-mir-615-3p (MIRT040423), hsa-mir-1229-3p (MIRT036351), hsa-let-7b-5p (MIRT051985), hsa-mir-30c-5p (MIRT047954), hsa-mir-877-3p (MIRT036906)

    Block miRNA regulation of human, mouse, rat ZNF687 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate ZNF687 (see all 24):
    hsa-miR-4328 hsa-miR-509-5p hsa-miR-488 hsa-miR-1205 hsa-miR-29b-1* hsa-miR-103a hsa-miR-124 hsa-miR-1184
    SwitchGear 3'UTR luciferase reporter plasmidZNF687 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZN687_HUMAN, Q8N1G0: Nucleus (Probable)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus4

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005730nucleolus IDA--

    Find genes that share ontologies with ZNF687           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF687
    Interactions:

        Search GeneGlobe Interaction Network for ZNF687

    STRING Interaction Network Preview (showing 5 interactants - click image to see 7)

    Selected Interacting proteins for ZNF687 (Q8N1G03 ENSP000003198294) via UniProtKB, MINT, STRING, and/or I2D (see all 7)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    INTS5Q6P9B93, ENSP000003278894I2D: score=1 STRING: ENSP00000327889
    RNF2Q994963, ENSP000003564804I2D: score=1 STRING: ENSP00000356480
    SUMO1P631653, ENSP000003760764I2D: score=1 STRING: ENSP00000376076
    INTS1Q8N2013, ENSP000003857224I2D: score=1 STRING: ENSP00000385722
    INTS3Q68E013, ENSP000003186414I2D: score=1 STRING: ENSP00000318641
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IEA--

    Find genes that share ontologies with ZNF687           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF687 (ZN687)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZNF687 gene: 
    NM_020832.1  

    Unigene Cluster for ZNF687:

    Zinc finger protein 687
    Hs.186756  [show with all ESTs]
    Unigene Representative Sequence: AB037862
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000443959 ENST00000336715(uc001exq.3) ENST00000449313(uc001exp.1)
    ENST00000324048(uc009wmo.3) ENST00000426871 ENST00000459919 ENST00000436614
    ENST00000368879(uc009wmp.3)
    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate ZNF687 (see all 24):
    hsa-miR-4328 hsa-miR-509-5p hsa-miR-488 hsa-miR-1205 hsa-miR-29b-1* hsa-miR-103a hsa-miR-124 hsa-miR-1184
    SwitchGear 3'UTR luciferase reporter plasmidZNF687 3' UTR sequence
    Inhib. RNA
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    GenScript: all cDNA clones in your preferred vector: ZNF687 (NM_020832)
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      QuantiTect SYBR Green Assays in human, mouse, rat ZNF687
      QuantiFast Probe-based Assays in human, mouse, rat ZNF687

    Additional mRNA sequence: 

    AB037862.1 AK023105.1 BC020245.1 BC032463.1 CR749307.1 

    8 DOTS entries:

    DT.95164401  DT.91732673  DT.121443513  DT.97848306  DT.402459  DT.102832727  DT.121443529  DT.99943313 

    Selected AceView cDNA sequences (see all 126):

    BM721303 BQ212546 BC032463 BU729994 CA488781 BM677037 BQ217249 AI745167 
    W84724 BQ231483 AL603613 NM_020832 BI753085 BM718164 AK023105 CD366120 
    BF510047 BI753953 BM704083 BM671840 CB305718 AI951587 AB037862 BM727825 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for ZNF687    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9
    SP1:                                            -               
    SP2:                                                            


    ECgene alternative splicing isoforms for ZNF687

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF687 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GACTGGAACT
    ZNF687 Expression
    About this image


    ZNF687 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     
     Heart (Cardiovascular System)    fully expand to see all 2 entries
             Atrioventricular Canal Cells Atrioventricular Canal
             Outflow Tract
    ZNF687 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF687 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.186756
        Custom PCR Arrays for ZNF687
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for ZNF687 gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp6871 , 5 zinc finger protein 6871, 5 84.93(n)1
    85.88(a)1
      3 (40.74 cM)5
    782661  NM_030074.21  NP_084350.11 
     950065905 
    chicken
    (Gallus gallus)
    Aves ZNF6871 zinc finger protein 687 65.04(n)
    64.75(a)
      429831  XM_427387.4  XP_427387.4 
    lizard
    (Anolis carolinensis)
    Reptilia ZNF6876
    zinc finger protein 687
    49(a)
    1 ↔ 1
    GL343616.1(374779-404583)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia znf6871 zinc finger protein 687 65.66(n)
    65.04(a)
      100036627  NM_001097186.1  NP_001090655.1 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.169482 Transcribed sequence with weak similarity to protein more 75.28(n)    BI982637.1 


    ENSEMBL Gene Tree for ZNF687 (if available)
    TreeFam Gene Tree for ZNF687 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF687 gene
    ZNF5322  ZNF5922  
    1 SIMAP similar gene for ZNF687 using alignment to 5 protein entries:     ZN687_HUMAN (see all proteins):
    ZNF532

    Find genes that share paralogs with ZNF687           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF687 (see all 277)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1856830041,2
    C--151256788(+) GGAGGA/GGTGGA 1 -- int10--------
    rs727085011,2
    C--151256990(+) AATTTC/TCTTGA 1 -- int10--------
    rs1904005741,2
    --151257072(+) CTGCAC/TGACCC 1 -- int10--------
    rs1822020261,2
    --151257092(+) GCCTCC/TGACCC 1 -- int10--------
    rs1404179891,2
    --151257102(+) CCAGCC/TCTAGA 1 -- int10--------
    rs1117374131,2
    F--151257135(+) AGTTCC/TTCCTT 1 -- int11Minor allele frequency- T:0.50CSA 2
    rs1918675021,2
    --151257147(+) ACCTGA/GCATGT 1 -- int10--------
    rs1841097941,2
    C--151257183(+) AAATCA/GTATTC 1 -- int10--------
    rs127542571,2
    --151257278(+) CTTGtC/Tttttt 1 -- int1 trp30--------
    rs741259151,2
    C,F--151257551(+) CGGCCA/TTTTGT 1 -- int12Minor allele frequency- T:0.06WA 120

    HapMap Linkage Disequilibrium report for ZNF687 (151254094 - 151264656 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for ZNF687:    About this table    
    Variant IDTypeSubtypePubMed ID
    dgv2n68CNV Loss17160897
    esv34461CNV Gain17911159
    nsv522840CNV Gain19592680

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 610568    OMIM disorders: --


    Find genes that share disorders with ZNF687           About GenesLikeMe


    Export disorders for ZNF687 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF687 gene, integrated from 10 sources (see all 27):
    (articles sorted by number of sources associating them with ZNF687)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10718198)1, 2, 3 Nagase T.... Ohara O. (DNA Res. 2000)
    2. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (Nature 2006)
    3. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (Cell 2006)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    6. Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS. (PubMed id 23455922)1 Varjosalo M....Superti-Furga G. (Nat. Methods 2013)
    7. The SOX2-interactome in brain cancer cells identifies the requirement of MSI2 and USP9X for the growth of brain tumor cells. (PubMed id 23667531)1 Cox J.L....Rizzino A. (PLoS ONE 2013)
    8. The functional interactome landscape of the human histone deacetylase family. (PubMed id 23752268)1 Joshi P....Cristea I.M. (Mol. Syst. Biol. 2013)
    9. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    10. The global gene-expression profiles of U-937 human macrophages treated with Tat peptide and Tat-FITC conjugate. (PubMed id 22632162)1 Lin C.W....Jan M.S. (J Drug Target 2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 57592 HGNC: 29277 AceView: KIAA1441 Ensembl:ENSG00000143373 euGenes: HUgn57592
    ECgene: ZNF687 H-InvDB: ZNF687

    (According to HUGE)
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    HUGE: KIAA1441

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZNF687 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF687 gene:
    Search GeneIP for patents involving ZNF687

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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