ZNF678 Gene
protein-coding GIFtS: 47
GCID: GC01P227751
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|
zinc finger protein 678
| |
Aliases for ZNF678 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb) About This Section
| This gene clusters with an RNA gene Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
|---|
| Zinc Finger Protein 6781 2 | | MGC424931 | | Hypothetical Protein MGC424932 |
| External Ids: | HGNC: 286521 | Entrez Gene: 3395002 | Ensembl: ENSG000001814507 | UniProtKB: Q5SXM13 | | ORGUL members: | |
|---|
| NONCODE:n409083 | |
Export aliases for ZNF678 gene to outside databasesPrevious GC identifers: GC01P224141 GC01P225817 GC01P198267
Summaries for ZNF678 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: ZN678_HUMAN, Q5SXM1Function: May be involved in transcriptional regulation
|
Genomic Views for ZNF678 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics) About This Section
| RefSeq DNA sequence:- NC_000001.10 NC_018912.1 NT_167186.1
Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ZNF678 gene promoter: RORalpha1 AP-2rep ZIC2/Zic2 LCR-F1 En-1 RORalpha2 Other transcription factors
Search SABiosciences Chromatin IP Primers for ZNF678
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF678 |
Genomic Location: Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1q42.13 Ensembl cytogenetic band: 1q42.13 HGNC cytogenetic band: 1q42.13ZNF678 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)

GeneLoc information about chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01P227751: view genomic region
(about GC identifiers)
Start:
|
227,751,220 bp from pter |
End:
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227,850,164 bp from pter |
Size:
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98,945 bases |
Orientation:
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plus strand |
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Proteins for ZNF678 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
| UniProtKB/Swiss-Prot: ZN678_HUMAN, Q5SXM1 (See
protein sequence)Recommended Name: Zinc finger protein 678 Size: 525 amino acids; 61411 Da
Subcellular location: Nucleus (Probable)
Secondary accessions: Q8IVQ9Explore the universe of human proteins at neXtProt for ZNF678: NX_Q5SXM1
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q5SXM1 ZNF678 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_848644.2 ENSEMBL proteins: ENSP00000344828 ENSP00000394651 ENSP00000440403 Reactome Protein details: Q5SXM1 Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table
ZNF678 for ontologies About GeneDecksing
ZNF678 Antibody Products: Assay Products for ZNF678: |
Protein
Domains / Families for ZNF678 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
ZNF678 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q5SXM1ProtoNet protein and cluster: Q5SXM1 UniProtKB/Swiss-Prot: ZN678_HUMAN, Q5SXM1Similarity: Belongs to the krueppel C2H2-type zinc-finger protein familySimilarity: Contains 15 C2H2-type zinc fingers |
Function for ZNF678 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
| Function Summary: UniProtKB/Swiss-Prot: ZN678_HUMAN, Q5SXM1Function: May be involved in transcriptional regulation
Clone Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ZNF678 OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZNF678 OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: ZNF678 (NM_178549) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ZNF678 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZNF678  |
In Situ Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF678 |
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table
ZNF678 for ontologies About GeneDecksing
3 GenomeRNAi human phenotypes for ZNF678:
|
Pathways & Interactions for ZNF678 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
| Unified GeneCards pathways  About this table  See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Generic Transcription Pathway | |
Pathway sources See GeneCards unified pathways Show all pathways
2
Reactome Pathways for ZNF678
ZNF678 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNF678
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006351 | transcription, DNA-dependent |
IEA | -- | | GO:0006355 | regulation of transcription, DNA-dependent |
IEA | -- |
ZNF678 for ontologies About GeneDecksing
|
Drugs & Compounds for ZNF678 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
Browse Tocris compounds for ZNF678 Search CenterWatch for drugs/clinical trials and news about ZNF678 / ZN678 
|
Transcripts for ZNF678 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
) About This Section
| REFSEQ mRNAs for ZNF678 gene (2 alternative transcripts): NM_032755.1 NM_178549.3 Unigene Cluster for ZNF678: Zinc finger protein 678 Hs.30323 [show with all ESTs]Unigene Representative Sequence: NR_0331846 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000498759(uc021pjy.1 uc001hqw.2) ENST00000343776(uc009xet.2) ENST00000465266 ENST00000440339 ENST00000497098 ENST00000397097(uc009xeu.2)
Clone Products: |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ZNF678 OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZNF678 OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: ZNF678 (NM_178549) | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ZNF678 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZNF678  |
Additional cDNA sequence: AB074269.1 AK026475.1 AK307248.1 AK311313.1 BC007286.1 BC042500.1 NR_033184.1 9 DOTS entries: DT.111483 DT.91962700 DT.91989596 DT.100710757 DT.434181 DT.121447820 DT.97786909 DT.95252917 DT.91917593 24/33 AceView cDNA sequences (see all 33): BM474693 AA234071 AA004774 BF701740 BG723184 AK026475 BI253975 AW341269 AU253723 AI638115 AV698906 BC042500 AA194947 AA677900 NM_178549 AA047700 AA004701 CD655825 BF197308 BG255294 AA704749 CF146171 AA489196 BX473670 GeneLoc Exon Structure
|
Expression for ZNF678 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| ZNF678 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this imageBioGPS CGAP TAG: GCCTTGGCCC
About this image See ZNF678 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for ZNF678
SOURCE GeneReport for Unigene cluster: Hs.30323 SABiosciences Custom PCR Arrays for ZNF678
Primer Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ZNF678 Browse OriGene validated miRNA SYBR primer pairs
| |  | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat ZNF678 | |  | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZNF678 | |  | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNF678 | In Situ Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF678 |
Orthologs for ZNF678 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for ZNF678 gene from 1/4 species (see all 4) About this table
ENSEMBL Gene Tree for ZNF678 (if available) TreeFam Gene Tree for ZNF678 (if available)  |
Paralogs for ZNF678 gene(Paralogs according to
1HomoloGene, 2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68) About This Section
| Paralogs for ZNF678 gene
- ZNF852 ZNF4932 ZNF4862 ZNF1002 ZNF922 ZNF7322 ZNF1382 ZNF6752
- ZNF5062 ZNF2732 ZNF66P2 ZNF6952 ZNF6262 ZNF6802 ZNF2532 ZNF4792
- ZNF932 ZNF4922 ZNF6822 ZNF6762 ZNF1412 ZNF6812 ZNF6792 ZNF2572
- ZNF2542 ZNF7372 ZNF724P2 ZNF982 ZNF849P2 ZNF7162 ZNF7142 ZNF4292
- ZNF4302 ZNF7302 ZNF1172 ZNF7082 ZNF1072 ZNF4312 ZNF902
18/539 SIMAP similar genes for ZNF678 using alignment to 3 protein entries: ZN678_HUMAN (see all proteins)
(see all similar genes):kr-znf3 ZNF345 ZFS-1 ZNF78L1 ZNF826P DKFZp686B16128 HZF30 smap-7 ZFS-6 DKFZp686H10254 ZNF818P ZNF808 DKFZp434G1930 DKFZp686M04222 HZF41 HZF36 ZNF626 ZNF660
ZNF678 for paralogs About GeneDecksing
4 Pseudogenes.org Pseudogenes for ZNF678 PGOHUM00000239011 PGOHUM00000250743 PGOHUM00000260244 PGOHUM00000233788
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Genomic Variants for ZNF678 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical significance | Chr 1 pos | Sequence | # | AA Chg | Type | More | # | Allele freq | Pop | Total sample | More |
|---|
HapMap Linkage Disequilibrium report for ZNF678 (227751220 - 227850164 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for ZNF678: --  | SABiosciences Cancer Mutation PCR Assays |
|  | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZNF678 |
|
Disorders
/ Diseases for ZNF678 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
ZNF678 for disorders About GeneDecksing
2 diseases for ZNF678: About MalaCardspediatric crohns disease crohn's disease Human Genome Epidemiology (HuGE) Navigator: ZNF678 (3 documents) Export disorders for ZNF678 gene to outside databases
|
Publications for ZNF678 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for ZNF678 gene integrated from 9 sources: (articles sorted by number of sources associating them with ZNF678) | |  | Utopia: connect your pdf to the dynamic world of online information |
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
- A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
- The role of height-associated loci identified in geno me wide association studies in the determination of pediatric stature. (PubMed id 20546612)1 Zhao J....Grant S.F. (2010)
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
- Association of linear growth impairment in pediatric Crohn's disease and a known height locus: a pilot study. (PubMed id 20846217)1 Lee J.J....Hirschhorn J. (2010)
- Genome-wide association analysis identifies 20 loci that influence adult height. (PubMed id 18391952)1 Weedon M.N....Frayling T.M. (2008)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
|
External Searches for ZNF678 gene
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ZNF678 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing ZNF678 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ZNF678 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| PharmGKB entry for ZNF678 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for ZNF678 gene: Search GeneIP for patents involving ZNF678
GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products for ZNF678 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
|
 | |
 | |
 |
| | | | Browse OriGene Antibodies | | OriGene shRNA RFP for ZNF678 | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ZNF678 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ZNF678 | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | OriGene siRNA for ZNF678 | | OriGene 3'-UTR Clone for ZNF678 | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZNF678 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ZNF678 | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | OriGene Custom Antibody Services for ZNF678 | | OriGene Custom Protein Services for ZNF678 | | OriGene Custom Immunoassay Development | | |
| |  |
 |
| | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ZNF678 | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZNF678 | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF678 | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ZNF678 | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZNF678 | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZNF678 |
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 |  |  |  | |
| | | Search Tocris compounds for ZNF678 |
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 | | ZNF678 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZNF678 |
|  |  |  | | | ThermoFisher Antibodies for ZNF678 |
| | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZNF678 |
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