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Aliases for ZNF678 Gene

Aliases for ZNF678 Gene

  • Zinc Finger Protein 678 2 3
  • Hypothetical Protein MGC42493 2

External Ids for ZNF678 Gene

Summaries for ZNF678 Gene

GeneCards Summary for ZNF678 Gene

ZNF678 (Zinc Finger Protein 678) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF10.

UniProtKB/Swiss-Prot for ZNF678 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF678 Gene

Genomics for ZNF678 Gene

Genomic Location for ZNF678 Gene

Start:
227,563,519 bp from pter
End:
227,677,443 bp from pter
Size:
113,925 bases
Orientation:
Plus strand

Genomic View for ZNF678 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF678 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF678 Gene

Regulatory Elements for ZNF678 Gene

Proteins for ZNF678 Gene

  • Protein details for ZNF678 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SXM1-ZN678_HUMAN
    Recommended name:
    Zinc finger protein 678
    Protein Accession:
    Q5SXM1
    Secondary Accessions:
    • Q8IVQ9

    Protein attributes for ZNF678 Gene

    Size:
    525 amino acids
    Molecular mass:
    61411 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF678 Gene

Proteomics data for ZNF678 Gene at MOPED

Post-translational modifications for ZNF678 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys68

Other Protein References for ZNF678 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF678 Gene

Domains for ZNF678 Gene

Gene Families for ZNF678 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF678 Gene

UniProtKB/Swiss-Prot:

ZN678_HUMAN
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q5SXM1
Similarity:
  • Contains 15 C2H2-type zinc fingers.:
    • Q5SXM1
genes like me logo Genes that share domains with ZNF678: view

Function for ZNF678 Gene

Molecular function for ZNF678 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF678 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF678: view
genes like me logo Genes that share phenotypes with ZNF678: view

miRNA for ZNF678 Gene

miRTarBase miRNAs that target ZNF678

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNF678 Gene

Localization for ZNF678 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF678 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF678 Gene COMPARTMENTS Subcellular localization image for ZNF678 gene
Compartment Confidence
nucleus 4
cytosol 2
cytoskeleton 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for ZNF678 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF678: view

Pathways for ZNF678 Gene

SuperPathways for ZNF678 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF678: view

Pathways by source for ZNF678 Gene

2 Reactome pathways for ZNF678 Gene

Interacting Proteins for ZNF678 Gene

Gene Ontology (GO) - Biological Process for ZNF678 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF678: view

Transcripts for ZNF678 Gene

Unigene Clusters for ZNF678 Gene

Zinc finger protein 678:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF678 Gene

No ASD Table

Relevant External Links for ZNF678 Gene

GeneLoc Exon Structure for
ZNF678
ECgene alternative splicing isoforms for
ZNF678

Expression for ZNF678 Gene

mRNA expression in normal human tissues for ZNF678 Gene

SOURCE GeneReport for Unigene cluster for ZNF678 Gene Hs.30323

genes like me logo Genes that share expressions with ZNF678: view

Orthologs for ZNF678 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF678 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF678 37
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LOC101904664 36
  • 72.58 (n)
  • 62.41 (a)
dog
(Canis familiaris)
Mammalia -- 37
  • 55 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Zfp72 37
  • 56 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 60 (a)
OneToMany
-- 37
  • 42 (a)
OneToMany
-- 37
  • 33 (a)
OneToMany
-- 37
  • 57 (a)
OneToMany
-- 37
  • 35 (a)
OneToMany
-- 37
  • 50 (a)
OneToMany
-- 37
  • 60 (a)
OneToMany
-- 37
  • 43 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 37
  • 46 (a)
OneToMany
Species with no ortholog for ZNF678:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF678 Gene

ENSEMBL:
Gene Tree for ZNF678 (if available)
TreeFam:
Gene Tree for ZNF678 (if available)

Paralogs for ZNF678 Gene

Selected SIMAP similar genes for ZNF678 Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for ZNF678 Gene

genes like me logo Genes that share paralogs with ZNF678: view

Variants for ZNF678 Gene

Sequence variations from dbSNP and Humsavar for ZNF678 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs903685 -- 227,603,720(+) GTCTG(G/T)TGACA intron-variant
rs903686 -- 227,603,721(+) TCTGT(G/T)GACAA intron-variant
rs903697 -- 227,579,144(-) gcagc(C/T)gctgc intron-variant
rs965942 -- 227,585,273(-) TCCAA(C/T)AGTTT intron-variant
rs996226 -- 227,656,089(-) TAGGA(C/G)GTTTT utr-variant-3-prime, nc-transcript-variant, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF678 Gene

Variant ID Type Subtype PubMed ID
nsv873246 CNV Gain 21882294
nsv873248 CNV Gain 21882294
esv2724195 CNV Deletion 23290073
esv2662269 CNV Deletion 23128226
esv2668154 CNV Deletion 23128226
esv2724206 CNV Deletion 23290073

Relevant External Links for ZNF678 Gene

HapMap Linkage Disequilibrium report
ZNF678

Disorders for ZNF678 Gene

Relevant External Links for ZNF678

Genetic Association Database (GAD)
ZNF678
Human Genome Epidemiology (HuGE) Navigator
ZNF678
genes like me logo Genes that share disorders with ZNF678: view

No data available for UniProtKB/Swiss-Prot for ZNF678 Gene

Publications for ZNF678 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  2. Genome-wide association analysis identifies 20 loci that influence adult height. (PMID: 18391952) Weedon M.N. … Frayling T.M. (Nat. Genet. 2008) 3 49
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  4. The role of height-associated loci identified in genome wide association studies in the determination of pediatric stature. (PMID: 20546612) Zhao J. … Grant S.F. (BMC Med. Genet. 2010) 3 49
  5. Association of linear growth impairment in pediatric Crohn's disease and a known height locus: a pilot study. (PMID: 20846217) Lee J.J. … Hirschhorn J. (Ann. Hum. Genet. 2010) 3 49

Products for ZNF678 Gene

Sources for ZNF678 Gene

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