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GIFtS

ZNF664-FAM101A Gene

protein-coding   GIFtS: 15
GCID: GC12U901544

ZNF664-FAM101A
  Search for ZNF664-FAM101A
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Aliases
for ZNF664-FAM101A gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Protein FAM101A2
ZNF664-FAM101A Readthrough2

External Ids:    Entrez Gene: 1005331832   

Export aliases for ZNF664-FAM101A gene to outside databases


Summaries
for ZNF664-FAM101A gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for ZNF664-FAM101A:
This locus represents naturally occurring read-through transcription between the neighboring zinc finger protein 664
(GeneID 144348) and hypothetical protein LOC144347 (GeneID 144347) genes on chromosome 12. The read-through transcript
produces a protein that shares sequence identity with the downstream hypothetical protein LOC144347 locus. (provided
by RefSeq, Feb 2011)




Genomic Views
for ZNF664-FAM101A gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000012.11  NC_018923.1  NT_009755.19  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for ZNF664-FAM101A
         Other transcription factors

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Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZNF664-FAM101A


Genomic Location:
Chromosome:12   

Entrez Gene cytogenetic band: 12q24.31   

GeneLoc information about chromosome 12        


Proteins
for ZNF664-FAM101A gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB: --
ZNF664-FAM101A Protein expression data from MOPED and PaxDb: --
REFSEQ proteins: NP_001191228.1  
Human Recombinant Protein Products: 
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Protein Domains /
Families
for ZNF664-FAM101A gene

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
   --

Function
for ZNF664-FAM101A gene

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section
miRNA
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Pathways & Interactions
for ZNF664-FAM101A gene

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About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZNF664-FAM101A

Drugs & Compounds
for ZNF664-FAM101A gene

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
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Browse Tocris compounds for ZNF664-FAM101A
Search CenterWatch for drugs/clinical trials and news about ZNF664-FAM101A 

Transcripts
for ZNF664-FAM101A gene

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section
REFSEQ mRNAs for ZNF664-FAM101A gene: 
NM_001204299.1  

Unigene Cluster for ZNF664-FAM101A:

Protein FAM101A
Hs.432901  [show with all ESTs]
Unigene Representative Sequence: NM_001204299

miRNA
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Additional cDNA sequence: 

AK074545.1 AK126577.1 BC026875.1 BC042102.1 BC067283.1 BC085606.1 BC141805.1 

6 DOTS entries:

DT.99964166  DT.312376  DT.101981274  DT.100780729  DT.100780730  DT.100728229 

Expression
for ZNF664-FAM101A gene

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
 See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --


ZNF664-FAM101A expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
2 LifeMap In Vivo Development Anatomical Compartments/Cells 
Tissue Anatomical Compartment CellCategory (developmental path)
BoneMandibular ProcessBone
LimbAutopodLimb
Expression: Positive    Negative     Selective marker
Experimental details: Curated     Microarrays     In-situ hybridization
Stem Cell Differentiation: 1 LifeMap Cell 
NameCategory
Primordial germ cell-like cells (Reconstitution of mo...)

SOURCE GeneReport for Unigene cluster: Hs.432901
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In Situ
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Orthologs
for ZNF664-FAM101A gene

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section
This gene was present in the common ancestor of chordates.

Orthologs for ZNF664-FAM101A gene from 2/7 species (see all 7)    About this table
Organism Taxonomic
classification		 Gene Description Human
Similarity		 Orthology
Type		 Details
chicken
(Gallus gallus)		 Aves FAM101A1 family with sequence similarity 101, member A 70.37(n)
65.93(a)		   771797  XM_001235027.2  XP_001235028.2 
zebrafish
(Danio rerio)		 Actinopterygii fam101a1 family with sequence similarity 101, member A 63.05(n)
54.26(a)		   368489  NM_001007031.2  NP_001007032.1 

Paralogs
for ZNF664-FAM101A gene

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for ZNF664-FAM101A gene
FAM101A  

ZNF664-FAM101A for paralogs           About GeneDecksing



Genomic Variants
for ZNF664-FAM101A gene

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/4906 NCBI SNPs in ZNF664-FAM101A are shown (see all 4906)     About this table
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance		Chr 12 posSequence#AA
Chg		TypeMore#Allele
freq		PopTotal
sample		More
----------
rs1426215861,2
--124500561(+) TGTGCC/TGCAGT 1 -- int10--------
rs73015471,2
C,F,A,--124500676(+) GTGGGG/AGGTGG 1 -- int14Minor allele frequency- A:0.35NA WA 124
rs106061851,2
C,--124500723(+) TGGTG-/AATCTGC 1 -- int11Minor allele frequency- AA:0.00CSA 2
rs1815496861,2
--124500885(+) GGGCAC/GAGCTC 1 -- int10--------
rs1505864861,2
--124500909(+) AGAAAC/TTGAAG 1 -- int10--------
rs761275171,2
F,--124500911(+) AAATTG/AAAGAG 1 -- int11Minor allele frequency- A:0.02WA 118
rs1862059991,2
--124500953(+) GATTCC/TTTCCA 1 -- int10--------
rs123104081,2
C,F,H,--124500994(+) AAAATT/GTTTGA 1 -- int16Minor allele frequency- G:0.05NS EA WA 474
rs734094281,2
C,F,--124501144(+) ACAGGG/TCAAGA 1 -- int13Minor allele frequency- T:0.38WA 122
rs1922799751,2
--124501157(+) CATATA/GTAAAT 1 -- int10--------

Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
      Database of Genomic Variants (DGV) variations for ZNF664-FAM101A: --
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Disorders / Diseases
for ZNF664-FAM101A gene

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
   --

Publications
for ZNF664-FAM101A gene

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for ZNF664-FAM101A gene integrated from 9 sources:
(articles sorted by number of sources associating them with ZNF664-FAM101A)		    Utopia: connect your pdf to the dynamic
world of online information

  1. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (PubMed id 22589738)1 Fox C.S....Borecki I.B. (2012)
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PubMed id 20967262)1 Prakash T....Taylor T.D. (2010)
  3. Biological, clinical and population relevance of 95 l oci for blood lipids. (PubMed id 20686565)1 Teslovich T.M....Kathiresan S. (2010)
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
  5. The finished DNA sequence of human chromosome 12. (PubMed id 16541075)1 Scherer S.E.... Gibbs R.A. (2006)
  6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1 Gerhard D.S....Malek J. (2004)
  7. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)

External Searches for ZNF664-FAM101A gene

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  
  Query String
PubMed
OMIM
NCBI Bookshelf
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Genome Databases showing ZNF664-FAM101A gene

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 100533183 euGenes: HUgn100533183

Other Databases showing ZNF664-FAM101A gene

(According to HUGE)
About This Section
   --

Specialized Databases showing ZNF664-FAM101A gene

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
   --

Intellectual Property
for ZNF664-FAM101A gene

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for ZNF664-FAM101A gene:
Search GeneIP for patents involving ZNF664-FAM101A

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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