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Aliases for ZNF658B Gene

Aliases for ZNF658B Gene

  • Zinc Finger Protein 658B, Pseudogene 2 3
  • Zinc Finger Protein 658B 2

External Ids for ZNF658B Gene

Summaries for ZNF658B Gene

GeneCards Summary for ZNF658B Gene

ZNF658B (Zinc Finger Protein 658B, Pseudogene) is a Pseudogene. Among its related pathways are Gene Expression and Gene Expression.

UniProtKB/Swiss-Prot for ZNF658B Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF658B Gene

Genomics for ZNF658B Gene

Genomic Location for ZNF658B Gene

Start:
39,443,815 bp from pter
End:
39,508,885 bp from pter
Size:
65,071 bases
Orientation:
Minus strand

Genomic View for ZNF658B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF658B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF658B Gene

Regulatory Elements for ZNF658B Gene

Transcription factor binding sites by QIAGEN in the ZNF658B gene promoter:

Proteins for ZNF658B Gene

  • Protein details for ZNF658B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4V348-Z658B_HUMAN
    Recommended name:
    Zinc finger protein 658B
    Protein Accession:
    Q4V348
    Secondary Accessions:
    • Q8N946

    Protein attributes for ZNF658B Gene

    Size:
    819 amino acids
    Molecular mass:
    94331 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF658B Gene

Proteomics data for ZNF658B Gene at MOPED

Post-translational modifications for ZNF658B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF658B Gene

Reactome Protein details:

No data available for DME Specific Peptides for ZNF658B Gene

Domains for ZNF658B Gene

Protein Domains for ZNF658B Gene

UniProtKB/Swiss-Prot:

Z658B_HUMAN
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q4V348
Similarity:
  • Contains 21 C2H2-type zinc fingers.:
    • Q4V348
genes like me logo Genes that share domains with ZNF658B: view

No data available for Gene Families for ZNF658B Gene

Function for ZNF658B Gene

Molecular function for ZNF658B Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF658B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF658B: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF658B Gene

Localization for ZNF658B Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF658B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF658B Gene COMPARTMENTS Subcellular localization image for ZNF658B gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF658B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF658B: view

Pathways for ZNF658B Gene

SuperPathways for ZNF658B Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF658B: view

Pathways by source for ZNF658B Gene

2 Reactome pathways for ZNF658B Gene

Interacting Proteins for ZNF658B Gene

Selected Interacting proteins: Q4V348-Z658B_HUMAN for ZNF658B Gene via MINT I2D

Symbol External ID(s) Details
SRC

Gene Ontology (GO) - Biological Process for ZNF658B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF658B: view

Transcripts for ZNF658B Gene

mRNA/cDNA for ZNF658B Gene

(1) REFSEQ mRNAs :
(11) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF658B Gene

No ASD Table

Relevant External Links for ZNF658B Gene

GeneLoc Exon Structure for
ZNF658B
ECgene alternative splicing isoforms for
ZNF658B

Expression for ZNF658B Gene

mRNA expression in normal human tissues for ZNF658B Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for ZNF658B Gene

SOURCE GeneReport for Unigene cluster for ZNF658B Gene Hs.730226

genes like me logo Genes that share expressions with ZNF658B: view

Orthologs for ZNF658B Gene

Evolution for ZNF658B Gene

ENSEMBL:
Gene Tree for ZNF658B (if available)
TreeFam:
Gene Tree for ZNF658B (if available)

No data available for Orthologs for ZNF658B Gene

Paralogs for ZNF658B Gene

Selected SIMAP similar genes for ZNF658B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZNF658B: view

No data available for Paralogs for ZNF658B Gene

Variants for ZNF658B Gene

Sequence variations from dbSNP and Humsavar for ZNF658B Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs9411721 -- 39,456,771(+) CTTCA(A/G)ACCTT intron-variant
rs62549005 -- 39,443,592(+) GCTCA(A/G)ACTAT downstream-variant-500B
rs62549006 -- 39,443,759(+) TATTT(C/T)ATCTC downstream-variant-500B
rs77019145 -- 39,465,460(+) TTTTT(A/T)AATTT upstream-variant-2KB
rs77984429 -- 39,465,702(+) TTGCC(C/T)AGGCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZNF658B Gene

Variant ID Type Subtype PubMed ID
dgv2317e1 CNV Complex 17122850
nsv893080 CNV Gain 21882294
nsv515139 CNV Gain 21397061
dgv2322e1 CNV Complex 17122850
nsv893088 CNV Loss 21882294
nsv893089 CNV Loss 21882294
esv2665475 CNV Deletion 23128226
essv367 CNV CNV 17122850
nsv893095 CNV Loss 21882294
esv29308 CNV Gain 19812545
nsv8451 CNV Gain 18304495
nsv8452 CNV Gain+Loss 18304495
esv2659225 CNV Deletion 23128226
dgv8190n71 CNV Gain+Loss 21882294
nsv831565 CNV Gain+Loss 17160897
essv23921 CNV CNV 17122850
esv27972 CNV Gain 19812545
nsv469526 CNV Complex 16826518
nsv471654 CNV Loss 15918152

Relevant External Links for ZNF658B Gene

HapMap Linkage Disequilibrium report
ZNF658B

Disorders for ZNF658B Gene

No disorders were found for ZNF658B Gene.

No data available for UniProtKB/Swiss-Prot for ZNF658B Gene

Publications for ZNF658B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. Artemin activates axonal growth via SFK and ERK-dependent signalling pathways in mature dorsal root ganglia neurons. (PMID: 17868192) Jeong D.G. … Park S. (Cell Biochem. Funct. 2008) 3

Products for ZNF658B Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNF658B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF658B
    • Block miRNA regulation of ZNF658B using miScript Target Protectors

    Sources for ZNF658B Gene

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