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ZNF652 Gene

protein-coding   GIFtS: 49
GCID: GC17M047366

Zinc Finger Protein 652

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 6521 2
KIAA09243 5

External Ids:    HGNC: 291471   Entrez Gene: 228342   Ensembl: ENSG000001987407   OMIM: 6139075   UniProtKB: Q9Y2D93   

Export aliases for ZNF652 gene to outside databases

Previous GC identifers: GC17M044728 GC17M042731


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF652 Gene:
ZNF652 (zinc finger protein 652) is a protein-coding gene. An important paralog of this gene is ZBTB47.

UniProtKB/Swiss-Prot: ZN652_HUMAN, Q9Y2D9
Function: Functions as a transcriptional repressor




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000017.10  NT_010783.16  NC_018928.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF652 gene promoter:
         HOXA9   AhR   GATA-6   E4BP4   Egr-4   E47   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for ZNF652

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF652


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q21.32   Ensembl cytogenetic band:  17q21.33   HGNC cytogenetic band: 17q21.32

ZNF652 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF652 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M047366:  view genomic region     (about GC identifiers)

Start:
47,366,568 bp from pter      End:
47,439,835 bp from pter
Size:
73,268 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZN652_HUMAN, Q9Y2D9 (See protein sequence)
Recommended Name: Zinc finger protein 652  
Size: 606 amino acids; 69744 Da
Subunit: Interacts with CBFA2T3
Sequence caution: Sequence=BAA76768.2; Type=Erroneous initiation;
Secondary accessions: A4QPD9 Q5H9Q0

Explore the universe of human proteins at neXtProt for ZNF652: NX_Q9Y2D9

Explore proteomics data for ZNF652 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZNF652 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001138837.1  NP_055712.1  

    ENSEMBL proteins: 
     ENSP00000424848   ENSP00000354686   ENSP00000416305  

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    antibodies-online kits for ZNF652 (6 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    3 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q9Y2D9

    ProtoNet protein and cluster: Q9Y2D9

    1 Blocks protein domain: IPB007086 C2H2-type zinc finger signature

    UniProtKB/Swiss-Prot: ZN652_HUMAN, Q9Y2D9
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 9 C2H2-type zinc fingers


    Find genes that share domains with ZNF652           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN652_HUMAN, Q9Y2D9
    Function: Functions as a transcriptional repressor

         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding IEA--
    GO:0005515protein binding IPI16966434
    GO:0046872metal ion binding IEA--
         
    Find genes that share ontologies with ZNF652           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ZNF652

    miRNA
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    miRTarBase miRNAs that target ZNF652:
    hsa-let-7b-5p (MIRT052080), hsa-mir-155-5p (MIRT000975), hsa-mir-192-5p (MIRT026163), hsa-mir-181a-5p (MIRT025073), hsa-mir-215-5p (MIRT024769), hsa-mir-221-3p (MIRT024148), hsa-mir-186-5p (MIRT021105), hsa-mir-132-3p (MIRT021763), hsa-mir-26b-5p (MIRT028923), hsa-mir-128-3p (MIRT021897), hsa-let-7e-5p (MIRT051578)

    Block miRNA regulation of human, mouse, rat ZNF652 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate ZNF652 (see all 237):
    hsa-miR-140-5p hsa-miR-579 hsa-miR-146a hsa-miR-106a hsa-miR-128 hsa-miR-3653 hsa-miR-138-2* hsa-miR-519a
    SwitchGear 3'UTR luciferase reporter plasmidZNF652 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZN652_HUMAN, Q9Y2D9: Nucleus (Probable)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus4
    cytosol2

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    Find genes that share ontologies with ZNF652           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF652
    Interactions:

        GeneGlobe Interaction Network for ZNF652

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    5 Interacting proteins for ZNF652 (Q9Y2D91, 3 ENSP000003546864) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CBFA2T3O750811, 3, ENSP000002686794EBI-1190229,EBI-1190217 I2D: score=3 STRING: ENSP00000268679
    CBFA2T2O434393, ENSP000002626534I2D: score=3 STRING: ENSP00000262653
    RUNX1T1Q064553, ENSP000002658144I2D: score=3 STRING: ENSP00000265814
    FOSP011003I2D: score=1 
    PRKAB1Q9Y4783I2D: score=1 
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IEA--

    Find genes that share ontologies with ZNF652           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF652 (ZN652)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZNF652 gene (2 alternative transcripts): 
    NM_001145365.1  NM_014897.2  

    Unigene Cluster for ZNF652:

    Zinc finger protein 652
    Hs.463375  [show with all ESTs]
    Unigene Representative Sequence: NM_001145365
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000513488 ENST00000508237(uc002iou.4) ENST00000362063(uc002iov.4 uc002iow.3)
    ENST00000430262
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    hsa-miR-140-5p hsa-miR-579 hsa-miR-146a hsa-miR-106a hsa-miR-128 hsa-miR-3653 hsa-miR-138-2* hsa-miR-519a
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    Additional mRNA sequence: 

    AB023141.1 AK292667.1 BC028045.1 BC034987.1 BC139779.1 BC152440.1 BX641027.1 CR933680.1 

    10 DOTS entries:

    DT.403079  DT.101983728  DT.92417618  DT.99959428  DT.95159338  DT.100700422  DT.100023698  DT.120947208 
    DT.91693476  DT.95184426 

    Selected AceView cDNA sequences (see all 234):

    CD105446 AA744239 F29926 AW373278 AA766025 AA127512 AA057773 AI034415 
    BU607811 AA706892 AA300030 AI916447 CA433410 BM664153 N63784 BX118167 
    AA761111 BQ008150 AW954152 BX644173 CB129621 BU838341 BX951343 AW581481 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF652 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    ZNF652 Expression
    About this image

    ZNF652 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF652 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.463375

    UniProtKB/Swiss-Prot: ZN652_HUMAN, Q9Y2D9
    Tissue specificity: Widely expressed with higher expression in breast, prostate, vulva and pancreas

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for ZNF652 gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp6521 , 5 zinc finger protein 6521, 5 88.21(n)1
    91.07(a)1
      11 (59.01 cM)5
    2684691  NM_201609.21  NP_963903.21 
     957126735 
    chicken
    (Gallus gallus)
    Aves ZNF6521 zinc finger protein 652 85.75(n)
    92.57(a)
      419987  XM_003642788.2  XP_003642836.1 
    lizard
    (Anolis carolinensis)
    Reptilia ZNF6526
    zinc finger protein 652
    82(a)
    1 ↔ 1
    6(76257405-76271029)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia Str.145922 Transcribed sequence with moderate similarity to protein more 78.88(n)    CF221869.1 
    zebrafish
    (Danio rerio)
    Actinopterygii znf6521 zinc finger protein 652 62.76(n)
    63.2(a)
      557571  XM_005163838.1  XP_005163895.1 


    ENSEMBL Gene Tree for ZNF652 (if available)
    TreeFam Gene Tree for ZNF652 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF652 gene
    ZBTB472  
    Selected SIMAP similar genes for ZNF652 using alignment to 2 protein entries:     ZN652_HUMAN (see all proteins) (see all similar genes):
    ZNF148    DKFZp434J0650    ZBTB47    ZNF227    ZNF72    ZNF78L1
    ZFS-2    ZNF235    ZFS-4    A-328A3.4    ZNF500    ZNF55
    ZNF845    kr-znf3    ZNF    ZNF234    ZNF664    HZF16

    Find genes that share paralogs with ZNF652           About GenesLikeMe


    1 Pseudogenes.org Pseudogene for ZNF652
    PGOHUM00000237627


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF652 (see all 1427)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs106098611,2
    C--42736438(+) aaaaa-/A/AAA 
            
    CTCTT
    4 -- ut311NA 2
    rs1385655511,2
    C--47366220(+) TCAAAC/TTGGTT 2 -- ds50010--------
    rs1412456011,2
    --47366283(+) GATTAC/TTGCTC 2 -- ds50010--------
    rs1811682791,2
    --47366288(+) TTGCTC/TGGCTG 2 -- ds50010--------
    rs1852643391,2
    --47366362(+) GTTAAC/TAGCCT 2 -- ds50010--------
    rs718799091,2
    C--47366562(+) CACAC-/AGGGGAT 2 -- ds50010--------
    rs728354771,2
    C--47366576(+) GGCTGC/GTTTTT 2 -- ut310--------
    rs38378151,2
    C--47366577(+) GCTGC-/TTTT  
      
    /TTTTT
    TTTTT
    4 -- ut311NA 2
    rs1469506351,2
    --47366631(+) ACACAC/TCCAAA 2 -- ut310--------
    rs1889935941,2
    --47366702(+) AAATAA/TACAAT 2 -- ut310--------

    HapMap Linkage Disequilibrium report for ZNF652 (47366568 - 47439835 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for ZNF652:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv271977CNV Insertion20981092
    nsv2075CNV Loss18451855
    nsv526307CNV Gain19592680

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 613907    OMIM disorders: --


    Find genes that share disorders with ZNF652           About GenesLikeMe

    Genetic Association Database (GAD): ZNF652
    Human Genome Epidemiology (HuGE) Navigator: ZNF652 (5 documents)

    Export disorders for ZNF652 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF652 gene, integrated from 10 sources (see all 24):
    (articles sorted by number of sources associating them with ZNF652)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10231032)1, 2, 3 Nagase T.... Ohara O. (DNA Res. 1999)
    2. Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure. (PubMed id 21909110)1, 4 Wain L.V....van Duijn C.M. (Nat. Genet. 2011)
    3. Genome-wide association study of prostate cancer in men of African ancestry identifies a susceptibility locus at 17q21. (PubMed id 21602798)1, 4 Haiman C.A....Henderson B.E. (Nat. Genet. 2011)
    4. Confirmation of top polymorphisms in hypertension genome wide association study among Han Chinese. (PubMed id 20542020)1, 4 Niu W....Zhu D. ( international journal of clinical chemistry 2010)
    5. Recapitulation of two genomewide association studies on blood pressure and essential hypertension in the Korean population. (PubMed id 20414254)1, 4 Hong K.W....Oh B. (J. Hum. Genet. 2010)
    6. Genome-wide association study identifies eight loci associated with blood pressure. (PubMed id 19430483)1, 4 Newton-Cheh C....Munroe P.B. (Nat. Genet. 2009)
    7. ZNF652, a novel zinc finger protein, interacts with the putative breast tumor suppressor CBFA2T3 to repress transcription. (PubMed id 16966434)1, 2 Kumar R.... Callen D.F. (Mol. Cancer Res. 2006)
    8. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    9. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PubMed id 23535732)1 Eeles R.A....Easton D.F. (Nat. Genet. 2013)
    10. A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation. (PubMed id 22829776)1 Coviello A.D....Perry J.R. (PLoS Genet. 2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
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      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 22834 HGNC: 29147 AceView: KIAA0924 Ensembl:ENSG00000198740 euGenes: HUgn22834
    ECgene: ZNF652 H-InvDB: ZNF652

    (According to HUGE)
    About This Section

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    HUGE: KIAA0924

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
    About This Section

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    NameDescription
    PharmGKB entry for ZNF652 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF652 gene:
    Search GeneIP for patents involving ZNF652

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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