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Aliases for ZNF625-ZNF20 Gene

Subcategory (RNA class) for ZNF625-ZNF20 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for ZNF625-ZNF20 Gene

  • ZNF625-ZNF20 Readthrough (NMD Candidate) 2 3

External Ids for ZNF625-ZNF20 Gene

Previous GeneCards Identifiers for ZNF625-ZNF20 Gene

  • GC19U901507
  • GC19M012246

Summaries for ZNF625-ZNF20 Gene

Entrez Gene Summary for ZNF625-ZNF20 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring zinc finger protein 625 (ZNF625) and zinc finger protein 20 (ZNF20) genes on chromosome 19. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Feb 2011]

GeneCards Summary for ZNF625-ZNF20 Gene

ZNF625-ZNF20 (ZNF625-ZNF20 Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class. An important paralog of this gene is ZNF709.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF625-ZNF20 Gene

Genomics for ZNF625-ZNF20 Gene

Genomic Location for ZNF625-ZNF20 Gene

Start:
12,131,350 bp from pter
End:
12,156,731 bp from pter
Size:
25,382 bases
Orientation:
Minus strand

Genomic View for ZNF625-ZNF20 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF625-ZNF20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF625-ZNF20 Gene

No data available for Regulatory Elements for ZNF625-ZNF20 Gene

Proteins for ZNF625-ZNF20 Gene

  • Protein details for ZNF625-ZNF20 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    F2Z3I2
    Recommended name:
    Protein ZNF625-ZNF20
    Protein Accession:
    F2Z3I2
    Secondary Accessions:

    Protein attributes for ZNF625-ZNF20 Gene

    Size:
    61 amino acids
    Molecular mass:
    7122 Da
    Quaternary structure:
    No Data Available
  • Protein details for ZNF625-ZNF20 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    F8WDT6
    Recommended name:
    Protein ZNF625-ZNF20
    Protein Accession:
    F8WDT6
    Secondary Accessions:

    Protein attributes for ZNF625-ZNF20 Gene

    Size:
    125 amino acids
    Molecular mass:
    14854 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF625-ZNF20 Gene

Proteomics data for ZNF625-ZNF20 Gene at MOPED

Post-translational modifications for ZNF625-ZNF20 Gene

No Post-translational modifications

Other Protein References for ZNF625-ZNF20 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ZNF625-ZNF20 Gene

Domains for ZNF625-ZNF20 Gene

Protein Domains for ZNF625-ZNF20 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZNF625-ZNF20: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF625-ZNF20 Gene

Function for ZNF625-ZNF20 Gene

Gene Ontology (GO) - Molecular Function for ZNF625-ZNF20 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
genes like me logo Genes that share ontologies with ZNF625-ZNF20: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF625-ZNF20 Gene

Localization for ZNF625-ZNF20 Gene

Gene Ontology (GO) - Cellular Components for ZNF625-ZNF20 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
genes like me logo Genes that share ontologies with ZNF625-ZNF20: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for ZNF625-ZNF20 Gene

Pathways for ZNF625-ZNF20 Gene

SuperPathways for ZNF625-ZNF20 Gene

No Data Available

Interacting Proteins for ZNF625-ZNF20 Gene

Gene Ontology (GO) - Biological Process for ZNF625-ZNF20 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated --
genes like me logo Genes that share ontologies with ZNF625-ZNF20: view

No data available for Pathways by source for ZNF625-ZNF20 Gene

Transcripts for ZNF625-ZNF20 Gene

mRNA/cDNA for ZNF625-ZNF20 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF625-ZNF20 Gene

No ASD Table

Relevant External Links for ZNF625-ZNF20 Gene

GeneLoc Exon Structure for
ZNF625-ZNF20
ECgene alternative splicing isoforms for
ZNF625-ZNF20

Expression for ZNF625-ZNF20 Gene

mRNA expression in normal human tissues for ZNF625-ZNF20 Gene

genes like me logo Genes that share expressions with ZNF625-ZNF20: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for ZNF625-ZNF20 Gene

Orthologs for ZNF625-ZNF20 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF625-ZNF20 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 4 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Zfp937 36
  • 11 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 8 (a)
ManyToMany
-- 36
  • 8 (a)
ManyToMany
-- 36
  • 8 (a)
ManyToMany
-- 36
  • 8 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 4 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 4 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii CR388132.2 36
  • 4 (a)
ManyToMany
CT573234.2 36
  • 4 (a)
ManyToMany
Species with no ortholog for ZNF625-ZNF20:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF625-ZNF20 Gene

ENSEMBL:
Gene Tree for ZNF625-ZNF20 (if available)
TreeFam:
Gene Tree for ZNF625-ZNF20 (if available)

Paralogs for ZNF625-ZNF20 Gene

genes like me logo Genes that share paralogs with ZNF625-ZNF20: view

Variants for ZNF625-ZNF20 Gene

Sequence variations from dbSNP and Humsavar for ZNF625-ZNF20 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs3760779 -- 12,142,512(-) CATGG(A/G)CAGAT intron-variant
rs35143697 -- 12,143,940(+) GTATC(-/AA)AAAAA intron-variant
rs59574295 -- 12,143,524(+) AAAAA(-/AA)GATAT intron-variant
rs66756984 -- 12,144,174(+) GAGGT(A/G)GAAGT intron-variant
rs67726460 -- 12,144,039(+) TGGTG(C/T)GGGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF625-ZNF20 Gene

Variant ID Type Subtype PubMed ID
nsv911068 CNV Gain 21882294
nsv911069 CNV Loss 21882294
nsv833753 CNV Loss 17160897
esv2665806 CNV Deletion 23128226
esv1002859 CNV Insertion 20482838

Relevant External Links for ZNF625-ZNF20 Gene

HapMap Linkage Disequilibrium report
ZNF625-ZNF20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF625-ZNF20 Gene

Disorders for ZNF625-ZNF20 Gene

No disorders were found for ZNF625-ZNF20 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF625-ZNF20 Gene

Publications for ZNF625-ZNF20 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3

Products for ZNF625-ZNF20 Gene

Sources for ZNF625-ZNF20 Gene

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