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Aliases for ZNF625 Gene

Aliases for ZNF625 Gene

  • Zinc Finger Protein 625 2 3

External Ids for ZNF625 Gene

Previous GeneCards Identifiers for ZNF625 Gene

  • GC19M012117
  • GC19M012104
  • GC19M012121
  • GC19M012122
  • GC19M012242
  • GC19M011830
  • GC19M012254
  • GC19M012255

Summaries for ZNF625 Gene

GeneCards Summary for ZNF625 Gene

ZNF625 (Zinc Finger Protein 625) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF709.

UniProtKB/Swiss-Prot for ZNF625 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF625 Gene

Genomics for ZNF625 Gene

Regulatory Elements for ZNF625 Gene

Genomic Location for ZNF625 Gene

Start:
12,142,090 bp from pter
End:
12,156,731 bp from pter
Size:
14,642 bases
Orientation:
Minus strand

Genomic View for ZNF625 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF625 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF625 Gene

Proteins for ZNF625 Gene

  • Protein details for ZNF625 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96I27-ZN625_HUMAN
    Recommended name:
    Zinc finger protein 625
    Protein Accession:
    Q96I27
    Secondary Accessions:
    • A4FU45
    • I3L0E9

    Protein attributes for ZNF625 Gene

    Size:
    306 amino acids
    Molecular mass:
    34746 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF625 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF625 Gene

Proteomics data for ZNF625 Gene at MOPED

Post-translational modifications for ZNF625 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF625 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF625 Gene

Domains for ZNF625 Gene

Gene Families for ZNF625 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF625 Gene

Suggested Antigen Peptide Sequences for ZNF625 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96I27

UniProtKB/Swiss-Prot:

ZN625_HUMAN :
  • Q96I27
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 9 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF625: view

Function for ZNF625 Gene

Molecular function for ZNF625 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF625 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0005515 protein binding IPI 25416956
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF625: view

Animal Model Products

CRISPR Products

miRNA for ZNF625 Gene

miRTarBase miRNAs that target ZNF625

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF625

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNF625 Gene

Localization for ZNF625 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF625 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF625 Gene COMPARTMENTS Subcellular localization image for ZNF625 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF625 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF625: view

Pathways for ZNF625 Gene

SuperPathways for ZNF625 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF625: view

Pathways by source for ZNF625 Gene

2 Reactome pathways for ZNF625 Gene

Gene Ontology (GO) - Biological Process for ZNF625 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF625: view

Transcripts for ZNF625 Gene

mRNA/cDNA for ZNF625 Gene

Unigene Clusters for ZNF625 Gene

Zinc finger protein 625:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF625

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF625 Gene

No ASD Table

Relevant External Links for ZNF625 Gene

GeneLoc Exon Structure for
ZNF625
ECgene alternative splicing isoforms for
ZNF625

Expression for ZNF625 Gene

mRNA expression in normal human tissues for ZNF625 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZNF625 Gene

SOURCE GeneReport for Unigene cluster for ZNF625 Gene Hs.732736

genes like me logo Genes that share expressions with ZNF625: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZNF625 Gene

Orthologs for ZNF625 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF625 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF625 35
  • 99.55 (n)
  • 99.73 (a)
ZNF625 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 48 (a)
ManyToMany
Species with no ortholog for ZNF625:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF625 Gene

ENSEMBL:
Gene Tree for ZNF625 (if available)
TreeFam:
Gene Tree for ZNF625 (if available)

Paralogs for ZNF625 Gene

Selected SIMAP similar genes for ZNF625 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ZNF625: view

Variants for ZNF625 Gene

Sequence variations from dbSNP and Humsavar for ZNF625 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
VAR_052882 -

Structural Variations from Database of Genomic Variants (DGV) for ZNF625 Gene

Variant ID Type Subtype PubMed ID
nsv911068 CNV Gain 21882294
nsv911069 CNV Loss 21882294
nsv833753 CNV Loss 17160897

Relevant External Links for ZNF625 Gene

HapMap Linkage Disequilibrium report
ZNF625

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF625 Gene

Disorders for ZNF625 Gene

No disorders were found for ZNF625 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF625 Gene

Publications for ZNF625 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Human POGZ modulates dissociation of HP1alpha from mitotic chromosome arms through Aurora B activation. (PMID: 20562864) Nozawa R.S. … Obuse C. (Nat. Cell Biol. 2010) 3
  5. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PMID: 22505724) Udeshi N.D. … Carr S.A. (Mol. Cell Proteomics 2012) 3

Products for ZNF625 Gene

Sources for ZNF625 Gene

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