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Aliases for ZNF599 Gene

Aliases for ZNF599 Gene

  • Zinc Finger Protein 599 2 3 5

External Ids for ZNF599 Gene

Previous GeneCards Identifiers for ZNF599 Gene

  • GC19M039940
  • GC19M035248
  • GC19M031755

Summaries for ZNF599 Gene

GeneCards Summary for ZNF599 Gene

ZNF599 (Zinc Finger Protein 599) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF805.

UniProtKB/Swiss-Prot for ZNF599 Gene

  • May be involved in transcriptional regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF599 Gene

Genomics for ZNF599 Gene

Regulatory Elements for ZNF599 Gene

Enhancers for ZNF599 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F034713 0.5 ENCODE 16.1 +60.4 60359 0.2 ELF3 CTCF SAP130 ARID4B MAX CEBPG ZSCAN9 ZNF2 RAD21 RFX5 ZNF599 PIR31245 ZNF302
GH19F034837 1 ENCODE 11.1 -65.3 -65322 2.9 HDGF PKNOX1 ARID4B BMI1 ZNF48 RAD21 RARA CBX5 ETV6 CREM ZNF599 ZNF30 ZNF302 ENSG00000261754 PIR34417 PIR57103
GH19F034712 0.7 ENCODE 11 +60.5 60453 0.0 ELF3 CTCF SAP130 ARID4B MAX CEBPG ZSCAN9 ZNF2 RAD21 RFX5 ZNF599 PIR31245 ZNF302
GH19F034774 1.1 FANTOM5 6.4 -1.0 -1002 0.1 ZBTB10 ZNF146 KLF1 MAZ KLF17 ZNF501 ZNF843 PRDM2 RBAK ZNF580 FAM187B ZNF599 SCGB2B2 ENSG00000270281
GH19F034771 1 ENCODE 6.4 +0.3 319 1.9 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 KLF13 ZNF181 LSM14A KIAA0355 ZNF599 LOC105372375
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZNF599 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF599 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000141740 428 1999 PKNOX1 CREB3L1 SIN3A ARID4B DMAP1 ZNF2 YY1 ZNF207 ZNF143 KLF13

Genomic Location for ZNF599 Gene

Chromosome:
19
Start:
34,758,074 bp from pter
End:
34,773,229 bp from pter
Size:
15,156 bases
Orientation:
Minus strand

Genomic View for ZNF599 Gene

Genes around ZNF599 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF599 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF599 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF599 Gene

Proteins for ZNF599 Gene

  • Protein details for ZNF599 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NL3-ZN599_HUMAN
    Recommended name:
    Zinc finger protein 599
    Protein Accession:
    Q96NL3
    Secondary Accessions:
    • Q569K0
    • Q5PRG1

    Protein attributes for ZNF599 Gene

    Size:
    588 amino acids
    Molecular mass:
    67492 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH44615.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for ZNF599 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF599 Gene

Post-translational modifications for ZNF599 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF599 Gene

No data available for DME Specific Peptides for ZNF599 Gene

Domains & Families for ZNF599 Gene

Gene Families for ZNF599 Gene

Suggested Antigen Peptide Sequences for ZNF599 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96NL3

UniProtKB/Swiss-Prot:

ZN599_HUMAN :
  • Contains 1 KRAB domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 14 C2H2-type zinc fingers.
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 14 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF599: view

Function for ZNF599 Gene

Molecular function for ZNF599 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for ZNF599 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0005515 protein binding IPI 25416956
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF599: view
genes like me logo Genes that share phenotypes with ZNF599: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF599 Gene

Localization for ZNF599 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF599 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF599 Gene COMPARTMENTS Subcellular localization image for ZNF599 gene
Compartment Confidence
nucleus 5
cytosol 3
plasma membrane 2

Gene Ontology (GO) - Cellular Components for ZNF599 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF599: view

Pathways & Interactions for ZNF599 Gene

SuperPathways for ZNF599 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF599: view

Pathways by source for ZNF599 Gene

2 Reactome pathways for ZNF599 Gene

Gene Ontology (GO) - Biological Process for ZNF599 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF599: view

No data available for SIGNOR curated interactions for ZNF599 Gene

Transcripts for ZNF599 Gene

Unigene Clusters for ZNF599 Gene

Zinc finger protein 599:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF599 Gene

No ASD Table

Relevant External Links for ZNF599 Gene

GeneLoc Exon Structure for
ZNF599
ECgene alternative splicing isoforms for
ZNF599

Expression for ZNF599 Gene

mRNA expression in normal human tissues for ZNF599 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ZNF599 Gene



Protein tissue co-expression partners for ZNF599 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ZNF599 Gene:

ZNF599

SOURCE GeneReport for Unigene cluster for ZNF599 Gene:

Hs.590961
genes like me logo Genes that share expression patterns with ZNF599: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZNF599 Gene

Orthologs for ZNF599 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF599 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF599 34 35
  • 98.79 (n)
dog
(Canis familiaris)
Mammalia ZNF599 34 35
  • 88.38 (n)
cow
(Bos Taurus)
Mammalia ZNF599 34 35
  • 86.96 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 38 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii si:dkey-7j22.3 35
  • 52 (a)
ManyToMany
CU138542.3 35
  • 43 (a)
ManyToMany
Species where no ortholog for ZNF599 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF599 Gene

ENSEMBL:
Gene Tree for ZNF599 (if available)
TreeFam:
Gene Tree for ZNF599 (if available)

Paralogs for ZNF599 Gene

Paralogs for ZNF599 Gene

(459) SIMAP similar genes for ZNF599 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ZNF599: view

Variants for ZNF599 Gene

Sequence variations from dbSNP and Humsavar for ZNF599 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10417392 -- 34,768,930(+) AGCAG(A/G)GGAGC intron-variant
rs10417707 -- 34,761,633(+) GTATA(C/T)ATGTA intron-variant
rs1056023 -- 34,774,381(+) CTTGT(C/T)TCATC nc-transcript-variant, upstream-variant-2KB
rs111302406 -- 34,767,471(+) GTCTG(A/T)GGTGT intron-variant
rs111472493 -- 34,769,535(+) ACCAC(A/G)TCTTC reference, synonymous-codon, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for ZNF599 Gene

Variant ID Type Subtype PubMed ID
esv2758756 CNV gain 17122850

Variation tolerance for ZNF599 Gene

Residual Variation Intolerance Score: 87.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.65; 56.80% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF599 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF599

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF599 Gene

Disorders for ZNF599 Gene

Relevant External Links for ZNF599

Genetic Association Database (GAD)
ZNF599
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF599

No disorders were found for ZNF599 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF599 Gene

Publications for ZNF599 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  4. Next-generation sequencing to generate interactome datasets. (PMID: 21516116) Yu H. … Vidal M. (Nat. Methods 2011) 3 64
  5. A de novo paradigm for mental retardation. (PMID: 21076407) Vissers L.E. … Veltman J.A. (Nat. Genet. 2010) 4 64

Products for ZNF599 Gene

Sources for ZNF599 Gene

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