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Aliases for ZNF597 Gene

Aliases for ZNF597 Gene

  • Zinc Finger Protein 597 2 3 5
  • HIT-4 3

External Ids for ZNF597 Gene

Previous GeneCards Identifiers for ZNF597 Gene

  • GC16M003487
  • GC16M003426
  • GC16M003488
  • GC16M003467
  • GC16M003472
  • GC16M003475
  • GC16M003479

Summaries for ZNF597 Gene

Entrez Gene Summary for ZNF597 Gene

  • This gene encodes a protein with multiple zinc finger domains. Loss of the related gene in rodents results in defects in neural development and embryonic lethality in mutant homozygotes. This gene is adjacent to a differentially methylated region (DMR) and is imprinted and maternally expressed. [provided by RefSeq, Nov 2015]

GeneCards Summary for ZNF597 Gene

ZNF597 (Zinc Finger Protein 597) is a Protein Coding gene. Among its related pathways are Gene Expression. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZNF200.

UniProtKB/Swiss-Prot for ZNF597 Gene

  • May be involved in transcriptional regulation.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF597 Gene

Genomics for ZNF597 Gene

Regulatory Elements for ZNF597 Gene

Enhancers for ZNF597 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F002968 0.5 ENCODE 36.1 +473.8 473797 3.4 HDGF MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF143 ZNF416 ZNF263 ZNF597 SNHG19 SNORD60 ERVK13-1 CLUAP1 CREBBP LOC107984895 ZNF205 ZNF174
GH16F004252 0.6 ENCODE 36 -810.1 -810107 1.7 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF143 CREBBP ZNF500 ZNF263 ZNF597 LINC01569 GC16M004246
GH16F003019 0.2 ENCODE 35 +421.2 421240 5.2 CREB3L1 MLX DMAP1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC ZNF263 ERVK13-1 SNHG19 ZNF597 BICDL2 SNORD60 CREBBP ENSG00000260447 ZNF205 ZNF174
GH16F003214 1.1 Ensembl ENCODE 28.5 +227.8 227817 2.7 HDGF PKNOX1 MLX ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 CBX5 ZNF597 CLUAP1 TIGD7 MEFV CREBBP THOC6 ZNF200 ZNF75A ZNF263 NAA60
GH16F003190 1.2 FANTOM5 ENCODE 28.3 +252.2 252233 0.8 ATF1 ZNF2 GTF3C2 FOS ZHX2 ZNF623 ZNF264 MYNN SP7 ZNF785 CREBBP ZNF597 THOC6 LOC105371055 ZNF263 ZNF213-AS1 CLUAP1 RNPS1 TIGD7 ENSG00000279473
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZNF597 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF597 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000502750 -159 2200 ZFP64 ETS1 ELK1 FOS ZNF263 SP3 NFYC MXD4 ZNF518A CTCF

Genomic Location for ZNF597 Gene

Chromosome:
16
Start:
3,432,422 bp from pter
End:
3,443,542 bp from pter
Size:
11,121 bases
Orientation:
Minus strand

Genomic View for ZNF597 Gene

Genes around ZNF597 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF597 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF597 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF597 Gene

Proteins for ZNF597 Gene

  • Protein details for ZNF597 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LX8-ZN597_HUMAN
    Recommended name:
    Zinc finger protein 597
    Protein Accession:
    Q96LX8

    Protein attributes for ZNF597 Gene

    Size:
    424 amino acids
    Molecular mass:
    48076 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ZNF597 Gene

Post-translational modifications for ZNF597 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF597 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF597 Gene

Domains & Families for ZNF597 Gene

Gene Families for ZNF597 Gene

Protein Domains for ZNF597 Gene

Suggested Antigen Peptide Sequences for ZNF597 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96LX8

UniProtKB/Swiss-Prot:

ZN597_HUMAN :
  • Contains 1 KRAB domain.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 7 C2H2-type zinc fingers.
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 7 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF597: view

Function for ZNF597 Gene

Molecular function for ZNF597 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.
UniProtKB/Swiss-Prot Induction:
Imprinted. Promoter methylation of the paternal allele may restrict expression to the maternal allele in leukocytes.

Gene Ontology (GO) - Molecular Function for ZNF597 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF597: view
genes like me logo Genes that share phenotypes with ZNF597: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ZNF597 Gene

Localization for ZNF597 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF597 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF597 Gene COMPARTMENTS Subcellular localization image for ZNF597 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF597 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF597: view

Pathways & Interactions for ZNF597 Gene

SuperPathways for ZNF597 Gene

SuperPathway Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF597: view

Pathways by source for ZNF597 Gene

2 Reactome pathways for ZNF597 Gene

Gene Ontology (GO) - Biological Process for ZNF597 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF597: view

No data available for SIGNOR curated interactions for ZNF597 Gene

Transcripts for ZNF597 Gene

mRNA/cDNA for ZNF597 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(27) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZNF597 Gene

Zinc finger protein 597:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF597 Gene

No ASD Table

Relevant External Links for ZNF597 Gene

GeneLoc Exon Structure for
ZNF597
ECgene alternative splicing isoforms for
ZNF597

Expression for ZNF597 Gene

mRNA expression in normal human tissues for ZNF597 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ZNF597 Gene



NURSA nuclear receptor signaling pathways regulating expression of ZNF597 Gene:

ZNF597

SOURCE GeneReport for Unigene cluster for ZNF597 Gene:

Hs.88630
genes like me logo Genes that share expression patterns with ZNF597: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ZNF597 Gene

Orthologs for ZNF597 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ZNF597 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF597 34 35
  • 98.82 (n)
dog
(Canis familiaris)
Mammalia ZNF597 34 35
  • 80.87 (n)
mouse
(Mus musculus)
Mammalia Zfp597 34 16 35
  • 76 (n)
rat
(Rattus norvegicus)
Mammalia Zfp597 34
  • 74.82 (n)
cow
(Bos Taurus)
Mammalia ZNF597 35
  • 57 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ZNF597 35
  • 32 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii CR352258.1 35
  • 30 (a)
OneToMany
Species where no ortholog for ZNF597 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ZNF597 Gene

ENSEMBL:
Gene Tree for ZNF597 (if available)
TreeFam:
Gene Tree for ZNF597 (if available)

Paralogs for ZNF597 Gene

Paralogs for ZNF597 Gene

(231) SIMAP similar genes for ZNF597 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ZNF597: view

Variants for ZNF597 Gene

Sequence variations from dbSNP and Humsavar for ZNF597 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs10451141 -- 3,445,276(+) TATCT(C/T)TTTTT intron-variant, upstream-variant-2KB
rs11077337 -- 3,442,048(+) TAAAG(G/T)TTACA intron-variant, upstream-variant-2KB
rs111546957 -- 3,437,283(+) GTGTG(C/T)TGGTT reference, missense
rs111595469 -- 3,433,039(+) GAACA(C/T)TGCCA utr-variant-3-prime
rs111847968 -- 3,433,977(+) ACTGC(-/A)AAAAA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ZNF597 Gene

Variant ID Type Subtype PubMed ID
esv29492 CNV gain 19812545
esv3637667 CNV gain 21293372
nsv1051957 CNV loss 25217958

Variation tolerance for ZNF597 Gene

Residual Variation Intolerance Score: 90.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.23; 52.46% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF597 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF597

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF597 Gene

Disorders for ZNF597 Gene

Relevant External Links for ZNF597

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF597

No disorders were found for ZNF597 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF597 Gene

Publications for ZNF597 Gene

  1. Methylation screening of reciprocal genome-wide UPDs identifies novel human-specific imprinted genes. (PMID: 21593219) Nakabayashi K. … Monk D. (Hum. Mol. Genet. 2011) 3 4 64
  2. Molecular characterization and gene disruption of a novel zinc-finger protein, HIT-4, expressed in rodent brain. (PMID: 19968752) Tanabe Y. … Nawa H. (J. Neurochem. 2010) 2 3 64
  3. Analysis of allelic differential expression in human white blood cells. (PMID: 16467561) Pant P.V. … Frazer K.A. (Genome Res. 2006) 3 4 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for ZNF597 Gene

Sources for ZNF597 Gene

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