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ZNF583 Gene

protein-coding   GIFtS: 45
GCID: GC19P056962

Zinc Finger Protein 583

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zinc Finger Protein 5831 2
Zinc Finger Protein L3-52 3

External Ids:    HGNC: 264271   Entrez Gene: 1479492   Ensembl: ENSG000001984407   UniProtKB: Q96ND83   

Export aliases for ZNF583 gene to outside databases

Previous GC identifers: GC19P061611 GC19P061612 GC19P056930 GC19P053224 GC19P056932 GC19P056934 GC19P056936 GC19P056941 GC19P056946 GC19P056953


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZNF583 Gene:
ZNF583 (zinc finger protein 583) is a protein-coding gene. An important paralog of this gene is ZNF79.

UniProtKB/Swiss-Prot: ZN583_HUMAN, Q96ND8
Function: May be involved in transcriptional regulation




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NT_011109.17  NC_018930.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZNF583 gene promoter:
         USF1   STAT1   NCX/Ncx   CUTL1   Nkx2-5   YY1   POU2F1   POU2F1a   USF-1   Chx10   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZNF583 promoter sequence
   Search Chromatin IP Primers for ZNF583

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZNF583


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.43   Ensembl cytogenetic band:  19q13.43   HGNC cytogenetic band: 19q13.43

ZNF583 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZNF583 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P056962:  view genomic region     (about GC identifiers)

Start:
56,909,335 bp from pter      End:
56,947,404 bp from pter
Size:
38,070 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: ZN583_HUMAN, Q96ND8 (See protein sequence)
Recommended Name: Zinc finger protein 583  
Size: 569 amino acids; 66033 Da
Secondary accessions: O14850 Q2NKK3

Explore the universe of human proteins at neXtProt for ZNF583: NX_Q96ND8

Explore proteomics data for ZNF583 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZNF583 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (3 alternative transcripts): 
    NP_001153332.1  NP_001153333.1  NP_689691.2  

    ENSEMBL proteins: 
     ENSP00000444291   ENSP00000388502   ENSP00000375657   ENSP00000291598  
    Reactome Protein details: Q96ND8

    ZNF583 Human Recombinant Protein Products:

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    antibodies-online antibodies for ZNF583 (7 products) 

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    antibodies-online kits for ZNF583 (4 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    4 InterPro protein domains:
     IPR001909 Krueppel-associated_box
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q96ND8

    ProtoNet protein and cluster: Q96ND8

    1 Blocks protein domain: IPB001909 KRAB box

    UniProtKB/Swiss-Prot: ZN583_HUMAN, Q96ND8
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 12 C2H2-type zinc fingers
    Similarity: Contains 1 KRAB domain


    Find genes that share domains with ZNF583           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZN583_HUMAN, Q96ND8
    Function: May be involved in transcriptional regulation

         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0003677DNA binding IEA--
    GO:0046872metal ion binding IEA--
         
    Find genes that share ontologies with ZNF583           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for ZNF583:
     Synthetic lethal with c-Myc af 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for ZNF583

    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate ZNF583 (see all 15):
    hsa-miR-98 hsa-miR-3146 hsa-let-7d hsa-miR-520d-5p hsa-miR-586 hsa-miR-202 hsa-let-7c hsa-let-7i
    SwitchGear 3'UTR luciferase reporter plasmidZNF583 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ZN583_HUMAN, Q96ND8: Nucleus (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    cytosol2

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus IEA--

    Find genes that share ontologies with ZNF583           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for ZNF583 About    
    See pathways by source

    SuperPathContained pathways About
    1Gene Expression
    Generic Transcription Pathway0.40
    Gene Expression0.40


    Find genes that share SuperPaths with ZNF583           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 Reactome Pathway for ZNF583
        Generic Transcription Pathway


        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZNF583
    Interactions:

        Search GeneGlobe Interaction Network for ZNF583

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated IEA--
    GO:0006355regulation of transcription, DNA-templated IEA--

    Find genes that share ontologies with ZNF583           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZNF583 (ZN583)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for ZNF583 gene (3 alternative transcripts): 
    NM_001159860.1  NM_001159861.1  NM_152478.2  

    Unigene Cluster for ZNF583:

    Zinc finger protein 583
    Hs.146854  [show with all ESTs]
    Unigene Representative Sequence: NM_152478
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000588635 ENST00000537943 ENST00000539211 ENST00000333201(uc002qnc.2 uc010ygm.1)
    ENST00000391778 ENST00000436972 ENST00000585612 ENST00000291598(uc010ygl.1)

    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate ZNF583 (see all 15):
    hsa-miR-98 hsa-miR-3146 hsa-let-7d hsa-miR-520d-5p hsa-miR-586 hsa-miR-202 hsa-let-7c hsa-let-7i
    SwitchGear 3'UTR luciferase reporter plasmidZNF583 3' UTR sequence
    Inhib. RNA
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat ZNF583
      QuantiTect SYBR Green Assays in human, mouse, rat ZNF583
      QuantiFast Probe-based Assays in human, mouse, rat ZNF583

    Additional mRNA sequence: 

    AF024698.1 AK055592.1 BC111772.1 

    7 DOTS entries:

    DT.40300816  DT.100016637  DT.40130516  DT.101955290  DT.121504548  DT.121504550  DT.110386 

    24 AceView cDNA sequences:

    BX280489 BF515666 BF507502 AA626677 AL833236 CD357699 CB108180 NM_152478 
    AI147574 BV205843 AI086545 BM811289 AK055592 BM810088 AU253911 AW449915 
    AA994388 AU253910 AI215964 N58534 BX111721 AF024698 BP338954 R47252 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for ZNF583    About this scheme

    ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c
    SP1:        -     -     -     -                 -           -                     
    SP2:                                            -           -                     
    SP3:                          -                 -           -                     
    SP4:                                            -                                 
    SP5:                                                                              


    ECgene alternative splicing isoforms for ZNF583

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZNF583 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    ZNF583 Expression
    About this image

    ZNF583 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZNF583 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.146854
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for ZNF583 gene from Selected species (see all 5)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zfp5831 , 5 zinc finger protein 5831, 5 85.27(n)1
    82.75(a)1
      7 (3.66 cM)5
    2130111  NM_001033249.31  NP_001028421.11 
     63156605 


    ENSEMBL Gene Tree for ZNF583 (if available)
    TreeFam Gene Tree for ZNF583 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZNF583 gene
    ZNF792  ZNF5702  ZFP302  ZNF5292  ZNF286B2  ZNF7902  ZNF3832  ZNF1812  
    ZNF2872  ZNF5822  ZNF4712  ZFP822  ZNF286A2  ZNF2502  ZNF8792  ZNF354C2  
    ZNF742  ZNF3912  ZNF5542  ZNF4542  ZFP902  ENSG000001876072  ZFP142  ZNF3312  
    ZNF354A2  ZNF4612  ZNF354B2  ZNF342  ZNF5272  ZNF5652  
    Selected SIMAP similar genes for ZNF583 using alignment to 3 protein entries:     ZN583_HUMAN (see all proteins) (see all similar genes):
    ZNF78L1    ZNF527    kr-znf3    ZNF573    ZNF721    ZNF471
    ZNF519    ZNF761    ZNF616    HZF30    ZNF554    ZNF675
    ZNF208    ZFS-4    ZNF625-ZNF20    ZNF845    ZNF91    ZNF730

    Find genes that share paralogs with ZNF583           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZNF583 (see all 460)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1818435571,2
    --56913543(+) TATGAC/GACTGT 1 -- us2k10--------
    rs1130485151,2
    C--56913567(+) TTTGAT/CACAAG 1 -- us2k12Minor allele frequency- C:0.04NA 122
    rs1858067121,2
    --56913572(+) TACAAA/GCCCTA 1 -- us2k10--------
    rs756714431,2
    C--56913670(+) CCTGTA/TATCCC 1 -- us2k10--------
    rs1512780091,2
    C--56913752(+) ACCCCA/GTCTCT 3 -- us2k10--------
    rs1400145501,2
    --56913761(+) CTACTA/GAAAAT 3 -- us2k10--------
    rs1909649701,2
    --56913799(+) ACGTGC/TCTGTA 3 -- us2k10--------
    rs1831532361,2
    --56913969(+) GTTGCA/GTTTGT 3 -- us2k10--------
    rs1866713641,2
    --56914049(+) TAAATA/GAAGCA 3 -- us2k10--------
    rs1453378561,2
    C--56914254(+) CATTTG/TGTATG 3 -- us2k10--------

    HapMap Linkage Disequilibrium report for ZNF583 (56909335 - 56947404 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for ZNF583:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv912516CNV Gain21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing ZNF583
    DNA2.0 Custom Variant and Variant Library Synthesis for ZNF583

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZNF583 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ZNF583)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    3. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
    5. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)1 Suzuki Y.... Sugano S. (Genome Res. 2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 147949 HGNC: 26427 AceView: ZNF583 Ensembl:ENSG00000198440 euGenes: HUgn147949
    ECgene: ZNF583 H-InvDB: ZNF583

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZNF583 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZNF583 gene:
    Search GeneIP for patents involving ZNF583

    GeneCards and IP:
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