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Aliases for ZNF565 Gene

Aliases for ZNF565 Gene

  • Zinc Finger Protein 565 2 3

External Ids for ZNF565 Gene

Summaries for ZNF565 Gene

GeneCards Summary for ZNF565 Gene

ZNF565 (Zinc Finger Protein 565) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF529.

UniProtKB/Swiss-Prot for ZNF565 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF565 Gene

Genomics for ZNF565 Gene

Genomic Location for ZNF565 Gene

Start:
36,182,060 bp from pter
End:
36,246,257 bp from pter
Size:
64,198 bases
Orientation:
Minus strand

Genomic View for ZNF565 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF565 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF565 Gene

Regulatory Elements for ZNF565 Gene

Proteins for ZNF565 Gene

  • Protein details for ZNF565 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9K5-ZN565_HUMAN
    Recommended name:
    Zinc finger protein 565
    Protein Accession:
    Q8N9K5
    Secondary Accessions:
    • B3KQ35
    • Q6NUS2

    Protein attributes for ZNF565 Gene

    Size:
    539 amino acids
    Molecular mass:
    62445 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF565 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF565 Gene

Proteomics data for ZNF565 Gene at MOPED

Post-translational modifications for ZNF565 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF565 Gene

No data available for DME Specific Peptides for ZNF565 Gene

Domains for ZNF565 Gene

Gene Families for ZNF565 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF565 Gene

UniProtKB/Swiss-Prot:

ZN565_HUMAN
Domain:
  • Contains 1 KRAB domain.:
    • Q8N9K5
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q8N9K5
Similarity:
  • Contains 12 C2H2-type zinc fingers.:
    • Q8N9K5
genes like me logo Genes that share domains with ZNF565: view

Function for ZNF565 Gene

Molecular function for ZNF565 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF565 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF565: view

Phenotypes for ZNF565 Gene

GenomeRNAi human phenotypes for ZNF565:
genes like me logo Genes that share phenotypes with ZNF565: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF565 Gene

Localization for ZNF565 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF565 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF565 Gene COMPARTMENTS Subcellular localization image for ZNF565 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF565 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF565: view

Pathways for ZNF565 Gene

SuperPathways for ZNF565 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF565: view

Pathways by source for ZNF565 Gene

2 Reactome pathways for ZNF565 Gene

Interacting Proteins for ZNF565 Gene

Gene Ontology (GO) - Biological Process for ZNF565 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IBA --
genes like me logo Genes that share ontologies with ZNF565: view

Transcripts for ZNF565 Gene

Unigene Clusters for ZNF565 Gene

Zinc finger protein 565:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF565 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c · 7d · 7e
SP1: - - - -
SP2: - -
SP3: -
SP4: - - -
SP5: - -
SP6:

Relevant External Links for ZNF565 Gene

GeneLoc Exon Structure for
ZNF565
ECgene alternative splicing isoforms for
ZNF565

Expression for ZNF565 Gene

mRNA expression in normal human tissues for ZNF565 Gene

SOURCE GeneReport for Unigene cluster for ZNF565 Gene Hs.596338

genes like me logo Genes that share expressions with ZNF565: view

Orthologs for ZNF565 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF565 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF565 36
  • 99.8 (n)
  • 99.8 (a)
ZNF565 37
  • 92 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ZNF565 36
  • 88.35 (n)
  • 90.65 (a)
ZNF565 37
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ZNF565 36
  • 89.89 (n)
  • 89.96 (a)
mouse
(Mus musculus)
Mammalia Zfp84 36
  • 62.31 (n)
  • 55.31 (a)
Zfp84 16
rat
(Rattus norvegicus)
Mammalia Zfp84 36
  • 61.34 (n)
  • 54.3 (a)
Species with no ortholog for ZNF565:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF565 Gene

ENSEMBL:
Gene Tree for ZNF565 (if available)
TreeFam:
Gene Tree for ZNF565 (if available)

Paralogs for ZNF565 Gene

Selected SIMAP similar genes for ZNF565 Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for ZNF565 Gene

genes like me logo Genes that share paralogs with ZNF565: view

Variants for ZNF565 Gene

Sequence variations from dbSNP and Humsavar for ZNF565 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1974843 -- 36,189,653(+) atttt(A/T)aaaaa intron-variant
rs2287897 -- 36,194,408(+) AAAGA(C/T)GCAAT intron-variant
rs2287898 -- 36,194,414(+) GCAAT(C/T)ACAAG intron-variant
rs2310857 -- 36,203,536(-) TGTAT(A/G)CCATT intron-variant
rs3210692 -- 36,183,450(-) GAATG(C/T)GGGAA synonymous-codon, reference

Structural Variations from Database of Genomic Variants (DGV) for ZNF565 Gene

Variant ID Type Subtype PubMed ID
esv1010122 CNV Insertion 20482838
nsv509739 CNV Insertion 20534489

Relevant External Links for ZNF565 Gene

HapMap Linkage Disequilibrium report
ZNF565

Disorders for ZNF565 Gene

No disorders were found for ZNF565 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF565 Gene

Publications for ZNF565 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for ZNF565 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ZNF565
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for ZNF565
  • Block miRNA regulation of ZNF565 using miScript Target Protectors

Sources for ZNF565 Gene

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