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Aliases for ZNF564 Gene

Aliases for ZNF564 Gene

  • Zinc Finger Protein 564 2 3

External Ids for ZNF564 Gene

Summaries for ZNF564 Gene

GeneCards Summary for ZNF564 Gene

ZNF564 (Zinc Finger Protein 564) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF709.

UniProtKB/Swiss-Prot for ZNF564 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF564 Gene

Genomics for ZNF564 Gene

Genomic Location for ZNF564 Gene

Start:
12,525,370 bp from pter
End:
12,551,542 bp from pter
Size:
26,173 bases
Orientation:
Minus strand

Genomic View for ZNF564 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF564 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF564 Gene

Regulatory Elements for ZNF564 Gene

Proteins for ZNF564 Gene

  • Protein details for ZNF564 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TBZ8-ZN564_HUMAN
    Recommended name:
    Zinc finger protein 564
    Protein Accession:
    Q8TBZ8
    Secondary Accessions:
    • B9EGT4
    • Q6P1K6

    Protein attributes for ZNF564 Gene

    Size:
    553 amino acids
    Molecular mass:
    63735 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH28367.2; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for ZNF564 Gene

Proteomics data for ZNF564 Gene at MOPED

Post-translational modifications for ZNF564 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ZNF564 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for ZNF564 Gene

Domains for ZNF564 Gene

Gene Families for ZNF564 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for ZNF564 Gene

UniProtKB/Swiss-Prot:

ZN564_HUMAN
Domain:
  • Contains 1 KRAB domain.:
    • Q8TBZ8
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.:
    • Q8TBZ8
Similarity:
  • Contains 15 C2H2-type zinc fingers.:
    • Q8TBZ8
genes like me logo Genes that share domains with ZNF564: view

Function for ZNF564 Gene

Molecular function for ZNF564 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF564 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0005515 protein binding IPI 25416956
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF564: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ZNF564 Gene

Localization for ZNF564 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF564 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF564 Gene COMPARTMENTS Subcellular localization image for ZNF564 gene
Compartment Confidence
nucleus 4

Gene Ontology (GO) - Cellular Components for ZNF564 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF564: view

Pathways for ZNF564 Gene

SuperPathways for ZNF564 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF564: view

Pathways by source for ZNF564 Gene

2 Reactome pathways for ZNF564 Gene

Gene Ontology (GO) - Biological Process for ZNF564 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF564: view

Transcripts for ZNF564 Gene

Unigene Clusters for ZNF564 Gene

Zinc finger protein 564:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF564 Gene

No ASD Table

Relevant External Links for ZNF564 Gene

GeneLoc Exon Structure for
ZNF564
ECgene alternative splicing isoforms for
ZNF564

Expression for ZNF564 Gene

mRNA expression in normal human tissues for ZNF564 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ZNF564 Gene

SOURCE GeneReport for Unigene cluster for ZNF564 Gene Hs.655615

genes like me logo Genes that share expressions with ZNF564: view

Orthologs for ZNF564 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF564 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF564 36
  • 99.76 (n)
  • 99.82 (a)
ZNF564 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 37
  • 56 (a)
ManyToMany
ZNF709 36
  • 71.63 (n)
  • 58.38 (a)
dog
(Canis familiaris)
Mammalia LOC611075 36
  • 77.17 (n)
  • 66.22 (a)
Species with no ortholog for ZNF564:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF564 Gene

ENSEMBL:
Gene Tree for ZNF564 (if available)
TreeFam:
Gene Tree for ZNF564 (if available)

Paralogs for ZNF564 Gene

Selected SIMAP similar genes for ZNF564 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with ZNF564: view

Variants for ZNF564 Gene

Sequence variations from dbSNP and Humsavar for ZNF564 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs10911 -- 12,525,971(-) ATTTG(A/G)AGGCC utr-variant-3-prime
rs2042948 -- 12,539,682(-) ttttt(C/T)ttttt intron-variant
rs2059850 -- 12,553,333(-) tgccc(G/T)ccctt upstream-variant-2KB
rs2861411 -- 12,550,521(-) gcgcc(A/G)ccacg intron-variant
rs2861412 -- 12,550,364(-) GTTTG(C/T)GTACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ZNF564 Gene

Variant ID Type Subtype PubMed ID
nsv510755 CNV Loss 20534489
esv2669161 CNV Deletion 23128226
esv2676012 CNV Deletion 23128226
nsv2419 CNV Loss 18451855
esv2657782 CNV Deletion 23128226
nsv828440 CNV Loss 20364138

Relevant External Links for ZNF564 Gene

HapMap Linkage Disequilibrium report
ZNF564

Disorders for ZNF564 Gene

No disorders were found for ZNF564 Gene.

No data available for UniProtKB/Swiss-Prot for ZNF564 Gene

Publications for ZNF564 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PMID: 22505724) Udeshi N.D. … Carr S.A. (Mol. Cell Proteomics 2012) 3
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for ZNF564 Gene

Sources for ZNF564 Gene

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