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Aliases for ZNF562 Gene

Aliases for ZNF562 Gene

  • Zinc Finger Protein 562 2 3

External Ids for ZNF562 Gene

Previous GeneCards Identifiers for ZNF562 Gene

  • GC19M009621
  • GC19M009759
  • GC19M009340

Summaries for ZNF562 Gene

GeneCards Summary for ZNF562 Gene

ZNF562 (Zinc Finger Protein 562) is a Protein Coding gene. Among its related pathways are Gene Expression and Gene Expression. An important paralog of this gene is ZNF426.

UniProtKB/Swiss-Prot for ZNF562 Gene

  • May be involved in transcriptional regulation

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF562 Gene

Genomics for ZNF562 Gene

Regulatory Elements for ZNF562 Gene

Genomic Location for ZNF562 Gene

Start:
9,641,808 bp from pter
End:
9,675,100 bp from pter
Size:
33,293 bases
Orientation:
Minus strand

Genomic View for ZNF562 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ZNF562 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF562 Gene

Proteins for ZNF562 Gene

  • Protein details for ZNF562 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6V9R5-ZN562_HUMAN
    Recommended name:
    Zinc finger protein 562
    Protein Accession:
    Q6V9R5
    Secondary Accessions:
    • Q32MN2
    • Q9NXS5

    Protein attributes for ZNF562 Gene

    Size:
    426 amino acids
    Molecular mass:
    48563 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF562 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF562 Gene

Proteomics data for ZNF562 Gene at MOPED

Post-translational modifications for ZNF562 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ZNF562 Gene

Domains for ZNF562 Gene

Gene Families for ZNF562 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Graphical View of Domain Structure for InterPro Entry

Q6V9R5

UniProtKB/Swiss-Prot:

ZN562_HUMAN :
  • Q6V9R5
Domain:
  • Contains 1 KRAB domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 8 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ZNF562: view

Function for ZNF562 Gene

Molecular function for ZNF562 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Gene Ontology (GO) - Molecular Function for ZNF562 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ZNF562: view

miRNA for ZNF562 Gene

miRTarBase miRNAs that target ZNF562

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for ZNF562 Gene

Localization for ZNF562 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ZNF562 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ZNF562 Gene COMPARTMENTS Subcellular localization image for ZNF562 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ZNF562 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ZNF562: view

Pathways for ZNF562 Gene

SuperPathways for ZNF562 Gene

Superpath Contained pathways
1 Gene Expression
genes like me logo Genes that share pathways with ZNF562: view

Pathways by source for ZNF562 Gene

2 Reactome pathways for ZNF562 Gene

Interacting Proteins for ZNF562 Gene

Gene Ontology (GO) - Biological Process for ZNF562 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with ZNF562: view

Transcripts for ZNF562 Gene

Unigene Clusters for ZNF562 Gene

Zinc finger protein 562:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF562 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c · 6d
SP1: -
SP2: -
SP3: - - -
SP4: - -
SP5:
SP6: - - -

Relevant External Links for ZNF562 Gene

GeneLoc Exon Structure for
ZNF562
ECgene alternative splicing isoforms for
ZNF562

Expression for ZNF562 Gene

mRNA expression in normal human tissues for ZNF562 Gene

SOURCE GeneReport for Unigene cluster for ZNF562 Gene Hs.371107

genes like me logo Genes that share expressions with ZNF562: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for ZNF562 Gene

Orthologs for ZNF562 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ZNF562 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ZNF562 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 23 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 35 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Zfp266 36
  • 41 (a)
OneToMany
Species with no ortholog for ZNF562:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ZNF562 Gene

ENSEMBL:
Gene Tree for ZNF562 (if available)
TreeFam:
Gene Tree for ZNF562 (if available)

Paralogs for ZNF562 Gene

Paralogs for ZNF562 Gene

Selected SIMAP similar genes for ZNF562 Gene using alignment to 9 proteins:

Pseudogenes.org Pseudogenes for ZNF562 Gene

genes like me logo Genes that share paralogs with ZNF562: view

Variants for ZNF562 Gene

Sequence variations from dbSNP and Humsavar for ZNF562 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs8927 -- 9,648,973(-) TTTTT(C/T)TTTAT utr-variant-3-prime
rs1057758 -- 9,653,067(-) GCTTA(C/T)TCAAC reference, missense
rs1057760 -- 9,653,063(-) ACTCA(A/G)CATAG reference, synonymous-codon
rs1057761 -- 9,653,058(-) ACATA(C/G)AAGAA missense, reference
rs1059194 - 9,653,539(-) AGAAA(C/T)TCTGT reference, missense

Structural Variations from Database of Genomic Variants (DGV) for ZNF562 Gene

Variant ID Type Subtype PubMed ID
esv2718156 CNV Deletion 23290073
esv2661640 CNV Deletion 23128226

Relevant External Links for ZNF562 Gene

HapMap Linkage Disequilibrium report
ZNF562

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF562 Gene

Disorders for ZNF562 Gene

Relevant External Links for ZNF562

Genetic Association Database (GAD)
ZNF562
Human Genome Epidemiology (HuGE) Navigator
ZNF562
genes like me logo Genes that share disorders with ZNF562: view

No data available for UniProtKB/Swiss-Prot for ZNF562 Gene

Publications for ZNF562 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3
  5. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3

Products for ZNF562 Gene

Sources for ZNF562 Gene

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