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Aliases for ZNF561-AS1 Gene

Subcategory (RNA class) for ZNF561-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZNF561-AS1 Gene

  • ZNF561 Antisense RNA 1 (Head To Head) 2 3 5
  • C19orf82 3 4
  • Chromosome 19 Open Reading Frame 82 2
  • Uncharacterized Protein C19orf82 3
  • ZNF561 Antisense Gene Protein 1 4
  • ZNF561 Antisense RNA 1 4

External Ids for ZNF561-AS1 Gene

Previous HGNC Symbols for ZNF561-AS1 Gene

  • C19orf82

Summaries for ZNF561-AS1 Gene

GeneCards Summary for ZNF561-AS1 Gene

ZNF561-AS1 (ZNF561 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZNF561-AS1 Gene

Genomics for ZNF561-AS1 Gene

Regulatory Elements for ZNF561-AS1 Gene

Enhancers for ZNF561-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G009620 1.4 FANTOM5 ENCODE 5.3 +0.6 600 3.1 PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 ZNF561 EIF3G LOC100128428 ENSG00000269300 ZNF846 UBL5 ZNF561-AS1 PIR53474
GH19G009596 0.6 ENCODE 0.3 -24.0 -24023 0.8 JUN CEBPB EP300 RFX5 FOSL1 JUND CEBPA HMBOX1 TRIM24 FOS ZNF561 ZNF846 LOC105376914 ZNF561-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ZNF561-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ZNF561-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000106906 9 2201 PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766

Genomic Location for ZNF561-AS1 Gene

Chromosome:
19
Start:
9,621,291 bp from pter
End:
9,645,896 bp from pter
Size:
24,606 bases
Orientation:
Plus strand

Genomic View for ZNF561-AS1 Gene

Genes around ZNF561-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZNF561-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZNF561-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZNF561-AS1 Gene

Proteins for ZNF561-AS1 Gene

  • Protein details for ZNF561-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    K7EIQ3-CS082_HUMAN
    Recommended name:
    Uncharacterized protein ZNF561-AS1
    Protein Accession:
    K7EIQ3

    Protein attributes for ZNF561-AS1 Gene

    Size:
    104 amino acids
    Molecular mass:
    11601 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ZNF561-AS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ZNF561-AS1 Gene

Post-translational modifications for ZNF561-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZNF561-AS1 Gene

Domains & Families for ZNF561-AS1 Gene

Protein Domains for ZNF561-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ZNF561-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZNF561-AS1 Gene

Function for ZNF561-AS1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZNF561-AS1 Gene

Localization for ZNF561-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZNF561-AS1 Gene

Pathways & Interactions for ZNF561-AS1 Gene

SuperPathways for ZNF561-AS1 Gene

No Data Available

Interacting Proteins for ZNF561-AS1 Gene

Gene Ontology (GO) - Biological Process for ZNF561-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZNF561-AS1 Gene

Drugs & Compounds for ZNF561-AS1 Gene

No Compound Related Data Available

Transcripts for ZNF561-AS1 Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ZNF561-AS1 Gene

No ASD Table

Relevant External Links for ZNF561-AS1 Gene

GeneLoc Exon Structure for
ZNF561-AS1
ECgene alternative splicing isoforms for
ZNF561-AS1

Expression for ZNF561-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ZNF561-AS1 Gene

Protein differential expression in normal tissues from HIPED for ZNF561-AS1 Gene

This gene is overexpressed in Cerebrospinal fluid (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ZNF561-AS1 Gene



Protein tissue co-expression partners for ZNF561-AS1 Gene

genes like me logo Genes that share expression patterns with ZNF561-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ZNF561-AS1 Gene

Orthologs for ZNF561-AS1 Gene

Evolution for ZNF561-AS1 Gene

ENSEMBL:
Gene Tree for ZNF561-AS1 (if available)
TreeFam:
Gene Tree for ZNF561-AS1 (if available)

No data available for Orthologs for ZNF561-AS1 Gene

Paralogs for ZNF561-AS1 Gene

No data available for Paralogs for ZNF561-AS1 Gene

Variants for ZNF561-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZNF561-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000220602 -- 9,628,446(+) ATCTC(A/G)GGGAA intron-variant
rs1000643511 -- 9,632,434(+) CCCAC(A/C)CTTAC intron-variant
rs1000894040 -- 9,622,535(+) CAAAG(G/T)AGATA intron-variant, upstream-variant-2KB
rs1001158527 -- 9,620,750(+) AAAAT(G/T)TTCAA intron-variant, upstream-variant-2KB
rs1001390051 -- 9,621,599(+) CGGGC(A/G)AGCGC nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ZNF561-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2718156 CNV deletion 23290073
esv2718157 CNV deletion 23290073
nsv1060112 CNV gain 25217958

Variation tolerance for ZNF561-AS1 Gene

Gene Damage Index Score: 0.94; 19.45% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ZNF561-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZNF561-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ZNF561-AS1 Gene

Disorders for ZNF561-AS1 Gene

Relevant External Links for ZNF561-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZNF561-AS1

No disorders were found for ZNF561-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZNF561-AS1 Gene

Publications for ZNF561-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ZNF561-AS1 Gene

Sources for ZNF561-AS1 Gene

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